Wall clock time and date at job start Mon Mar 30 2020 03:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38283 * 119.92228 * 2 1 4 4 C 1.38220 * 120.29030 * 180.37210 * 3 2 1 5 5 C 1.38755 * 119.96476 * 359.42922 * 4 3 2 6 6 C 1.39445 * 119.63700 * 0.16471 * 5 4 3 7 7 C 1.38295 * 119.92390 * 179.73467 * 2 1 3 8 8 N 1.40295 * 119.49178 * 180.23914 * 6 5 4 9 9 C 1.35133 * 118.60031 * 17.93679 * 8 6 5 10 10 O 1.21293 * 120.27211 * 180.85492 * 9 8 6 11 11 C 1.50683 * 119.45363 * 0.82929 * 9 8 6 12 12 N 1.39689 * 120.14618 * 179.97438 * 5 4 3 13 13 C 1.46898 * 110.99707 * 19.80551 * 12 5 4 14 14 C 1.50704 * 109.46521 * 175.73575 * 13 12 5 15 15 H 1.07994 * 120.00283 * 5.45705 * 14 13 12 16 16 C 1.37883 * 119.99778 * 185.46305 * 14 13 12 17 17 N 1.31519 * 119.99900 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99914 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47114 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46971 * 119.99823 * 18 16 14 21 21 H 1.48499 * 109.46980 * 239.99601 * 18 16 14 22 22 H 1.08998 * 109.46641 * 270.26563 * 1 2 3 23 23 H 1.08994 * 109.46851 * 30.26086 * 1 2 3 24 24 H 1.09000 * 109.47047 * 150.26597 * 1 2 3 25 25 H 1.08006 * 119.85987 * 0.08152 * 3 2 1 26 26 H 1.08005 * 120.02064 * 179.70916 * 4 3 2 27 27 H 1.07998 * 120.06044 * 359.95285 * 7 2 1 28 28 H 0.96998 * 120.70220 * 197.96033 * 8 6 5 29 29 H 1.09006 * 109.37131 * 85.28380 * 11 9 8 30 30 H 1.09003 * 109.37453 * 205.03998 * 11 9 8 31 31 H 1.08998 * 109.47493 * 295.73245 * 13 12 5 32 32 H 1.09000 * 109.47039 * 55.74378 * 13 12 5 33 33 H 0.96996 * 119.99856 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5790 1.2074 -0.0078 5 6 4.2798 0.0098 -0.0036 6 6 3.5820 -1.1974 0.0049 7 6 2.1970 -1.1986 0.0056 8 7 4.2936 -2.4065 0.0142 9 6 5.5943 -2.3887 0.3801 10 8 6.2425 -3.4139 0.3841 11 6 6.2330 -1.0846 0.7827 12 7 5.6767 0.0144 -0.0119 13 6 6.2015 1.3096 0.4406 14 6 7.7051 1.2427 0.5184 15 1 8.2249 0.3608 0.1745 16 6 8.4170 2.3076 1.0287 17 7 7.7840 3.3818 1.4471 18 14 10.2807 2.2250 1.1244 19 1 10.7463 0.9187 0.5935 20 1 10.8670 3.3252 0.3174 21 1 10.7104 2.3654 2.5389 22 1 -0.3632 0.0048 1.0277 23 1 -0.3633 0.8876 -0.5179 24 1 -0.3633 -0.8924 -0.5097 25 1 1.6533 2.1318 0.0013 26 1 4.1133 2.1460 -0.0125 27 1 1.6567 -2.1337 0.0107 28 1 3.8612 -3.2376 -0.2371 29 1 6.0413 -0.8993 1.8397 30 1 7.3086 -1.1418 0.6149 31 1 5.9084 2.0870 -0.2649 32 1 5.7968 1.5414 1.4258 33 1 8.2848 4.1310 1.8057 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261215278.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:36 Heat of formation + Delta-G solvation = -25.255256 kcal Electronic energy + Delta-G solvation = -17524.691252 eV Core-core repulsion = 14742.083139 eV Total energy + Delta-G solvation = -2782.608113 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.22444 -39.88504 -38.01843 -36.34975 -34.72370 -32.64272 -30.66267 -29.97285 -28.61154 -26.27204 -24.33447 -23.71883 -22.57389 -20.11365 -19.29269 -18.64170 -18.11790 -17.21512 -17.06097 -16.22448 -15.80053 -15.59553 -15.23925 -15.06942 -14.72721 -14.50855 -14.17545 -13.72889 -13.46662 -13.29384 -12.93277 -12.75808 -12.72505 -12.51877 -12.27174 -11.89733 -11.63078 -11.36559 -11.22976 -10.77711 -10.46208 -9.38806 -8.37025 -8.29145 -6.40270 0.21441 0.42914 1.33850 1.39979 1.42006 1.54491 1.96267 2.35779 2.71124 2.96889 3.06525 3.29709 3.77532 4.04650 4.12702 4.35465 4.38839 4.42309 4.53082 4.78854 4.92965 4.99774 5.00539 5.03577 5.13815 5.30188 5.35812 5.53563 5.65929 5.73498 5.83037 5.84319 5.97545 6.08025 6.49517 6.72176 6.87918 7.30275 8.82237 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.007102 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.905324 B = 3941.414152 C = 4989.615668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.093 4.093 3 C -0.108 4.108 4 C -0.149 4.149 5 C 0.060 3.940 6 C 0.097 3.903 7 C -0.115 4.115 8 N -0.646 5.646 9 C 0.530 3.470 10 O -0.557 6.557 11 C 0.054 3.946 12 N -0.494 5.494 13 C 0.214 3.786 14 C -0.545 4.545 15 H 0.066 0.934 16 C 0.015 3.985 17 N -0.923 5.923 18 Si 0.966 3.034 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.276 1.276 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.146 0.854 26 H 0.117 0.883 27 H 0.160 0.840 28 H 0.423 0.577 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.025 0.975 32 H -0.009 1.009 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.564 -6.190 -1.625 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.095 4.095 3 C -0.127 4.127 4 C -0.170 4.170 5 C -0.041 4.041 6 C 0.000 4.000 7 C -0.136 4.136 8 N -0.293 5.293 9 C 0.318 3.682 10 O -0.434 6.434 11 C -0.075 4.075 12 N -0.208 5.208 13 C 0.090 3.910 14 C -0.583 4.583 15 H 0.084 0.916 16 C -0.185 4.185 17 N -0.562 5.562 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.097 0.903 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.163 0.837 26 H 0.135 0.865 27 H 0.177 0.823 28 H 0.264 0.736 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.043 0.957 32 H 0.009 0.991 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.797 -6.545 -1.960 15.396 hybrid contribution 1.038 0.255 0.641 1.246 sum -12.760 -6.290 -1.320 14.287 Atomic orbital electron populations 1.20764 0.88065 1.03935 1.03194 1.19993 0.97782 0.91419 1.00261 1.21141 0.92226 0.99323 1.00003 1.21111 0.95572 0.96134 1.04216 1.19185 0.88493 0.93858 1.02519 1.17651 0.92298 0.83314 1.06752 1.20749 0.89521 1.00152 1.03184 1.43496 1.10446 1.09780 1.65541 1.20898 0.81799 0.90502 0.75019 1.90704 1.63056 1.35789 1.53866 1.22071 1.01888 0.86540 0.97048 1.58611 1.04157 1.06497 1.51580 1.19588 0.94695 0.83579 0.93134 1.21509 0.91794 1.02765 1.42253 0.91596 1.25782 1.03721 0.94657 0.94304 1.70048 1.37718 1.06245 1.42192 0.85379 0.79136 0.78453 0.77982 1.19068 1.20209 1.20178 0.90300 0.90539 0.90120 0.83671 0.86521 0.82268 0.73607 0.91081 0.86735 0.95702 0.99077 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.01 71.24 0.71 -0.69 16 2 C -0.09 -2.05 5.88 -19.84 -0.12 -2.17 16 3 C -0.11 -2.88 9.68 22.28 0.22 -2.66 16 4 C -0.15 -5.28 8.96 22.39 0.20 -5.08 16 5 C 0.06 2.30 5.91 38.30 0.23 2.53 16 6 C 0.10 3.01 6.51 38.14 0.25 3.26 16 7 C -0.12 -2.69 9.60 22.35 0.21 -2.47 16 8 N -0.65 -19.63 5.49 -302.62 -1.66 -21.29 16 9 C 0.53 20.02 7.91 87.60 0.69 20.72 16 10 O -0.56 -23.30 17.96 -3.07 -0.06 -23.35 16 11 C 0.05 2.24 5.08 85.61 0.44 2.68 16 12 N -0.49 -21.90 4.77 -704.33 -3.36 -25.26 16 13 C 0.21 10.93 3.74 85.56 0.32 11.25 16 14 C -0.55 -29.78 8.39 25.60 0.21 -29.57 16 15 H 0.07 3.56 6.25 -2.91 -0.02 3.54 16 16 C 0.02 0.84 5.46 84.66 0.46 1.31 16 17 N -0.92 -52.88 13.29 21.45 0.28 -52.60 16 18 Si 0.97 43.11 29.54 68.60 2.03 45.13 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 22 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 24 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 25 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 26 H 0.12 4.62 6.00 -2.91 -0.02 4.60 16 27 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.42 9.98 8.90 -92.71 -0.83 9.15 16 29 H 0.07 2.95 8.13 -2.38 -0.02 2.93 16 30 H 0.11 5.10 6.23 -2.39 -0.01 5.09 16 31 H 0.03 1.35 6.82 -2.39 -0.02 1.34 16 32 H -0.01 -0.47 7.98 -2.39 -0.02 -0.49 16 33 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -65.19 278.52 1.38 -63.81 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.31 Total: 14.47 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 3.83 Total: -0.90 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -4.74 Total: -99.16 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.35 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -65.19 1.38 -63.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215278.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.557 kcal (2) G-P(sol) polarization free energy of solvation -65.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds