Wall clock time and date at job start Mon Mar 30 2020 03:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38281 * 119.92960 * 2 1 4 4 C 1.38109 * 120.06763 * 179.97438 * 3 2 1 5 5 C 1.38867 * 119.93226 * 359.97438 * 4 3 2 6 6 N 1.39925 * 120.07174 * 179.97438 * 5 4 3 7 7 C 1.34056 * 123.46490 * 132.42944 * 6 5 4 8 8 O 1.21292 * 125.58540 * 0.02572 * 7 6 5 9 9 C 1.51183 * 108.82436 * 180.02562 * 7 6 5 10 10 C 1.53980 * 104.31261 * 359.97438 * 9 7 6 11 11 N 1.39337 * 123.46422 * 312.43391 * 6 5 4 12 12 C 1.36939 * 125.33572 * 0.26442 * 11 6 5 13 13 H 1.08003 * 119.99876 * 324.29574 * 12 11 6 14 14 C 1.38807 * 120.00447 * 144.30008 * 12 11 6 15 15 N 1.31620 * 120.00191 * 161.79422 * 14 12 11 16 16 Si 1.86804 * 119.99782 * 341.79735 * 14 12 11 17 17 H 1.48502 * 109.47217 * 85.51430 * 16 14 12 18 18 H 1.48501 * 109.47097 * 205.51604 * 16 14 12 19 19 H 1.48499 * 109.46888 * 325.51575 * 16 14 12 20 20 C 1.38869 * 119.85929 * 0.25885 * 5 4 3 21 21 C 1.38116 * 119.92879 * 359.48665 * 20 5 4 22 22 H 1.08997 * 109.47078 * 89.99909 * 1 2 3 23 23 H 1.09002 * 109.47057 * 210.00284 * 1 2 3 24 24 H 1.08998 * 109.46803 * 330.00314 * 1 2 3 25 25 H 1.08004 * 119.96474 * 359.97438 * 3 2 1 26 26 H 1.08008 * 120.02957 * 180.02562 * 4 3 2 27 27 H 1.09004 * 110.46178 * 241.29427 * 9 7 6 28 28 H 1.09002 * 110.57620 * 118.76577 * 9 7 6 29 29 H 1.09007 * 110.43821 * 241.25435 * 10 9 7 30 30 H 1.08997 * 110.43728 * 118.74843 * 10 9 7 31 31 H 0.97005 * 120.00024 * 179.97438 * 15 14 12 32 32 H 1.07997 * 120.03763 * 179.72736 * 20 5 4 33 33 H 1.07997 * 119.96611 * 180.27325 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2017 0.0005 5 6 4.2739 0.0000 0.0016 6 7 5.6731 -0.0001 0.0016 7 6 6.4123 -0.7539 0.8277 8 8 5.9786 -1.5177 1.6642 9 6 7.8751 -0.4959 0.5459 10 6 7.8663 0.5417 -0.5918 11 7 6.4415 0.7834 -0.8570 12 6 5.9463 1.6479 -1.7966 13 1 5.0408 1.4028 -2.3318 14 6 6.6081 2.8390 -2.0612 15 7 6.3643 3.4936 -3.1767 16 14 7.8449 3.5128 -0.8341 17 1 9.1736 2.8974 -1.0817 18 1 7.9449 4.9862 -0.9903 19 1 7.3995 3.1904 0.5454 20 6 3.5781 -1.2018 -0.0033 21 6 2.1969 -1.1984 0.0015 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6552 2.1327 -0.0004 26 1 4.1163 2.1381 0.0010 27 1 8.3680 -1.4123 0.2215 28 1 8.3695 -0.0901 1.4285 29 1 8.3558 0.1386 -1.4784 30 1 8.3549 1.4619 -0.2714 31 1 6.8265 4.3262 -3.3615 32 1 4.1163 -2.1381 -0.0069 33 1 1.6552 -2.1327 0.0021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261314507.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:49 Heat of formation + Delta-G solvation = 57.176896 kcal Electronic energy + Delta-G solvation = -17876.861863 eV Core-core repulsion = 15097.828276 eV Total energy + Delta-G solvation = -2779.033587 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22442 -38.31852 -36.37026 -33.49546 -32.74683 -30.50531 -30.39799 -29.67155 -26.06227 -24.29135 -22.70841 -22.03105 -21.27441 -19.33795 -17.98361 -16.54372 -15.84236 -15.38798 -15.04388 -14.78469 -14.45175 -14.07620 -13.45095 -13.32288 -13.10473 -12.90973 -12.68024 -12.44438 -12.21192 -11.93932 -11.79670 -11.43667 -11.11485 -10.99384 -10.67006 -10.38743 -10.20473 -9.59367 -9.35806 -8.85644 -8.42181 -8.02872 -6.60441 -6.42715 -3.86141 1.69207 1.92567 2.99857 3.07446 3.15795 3.21806 3.25577 4.12915 4.24006 4.81373 4.87158 5.22860 5.24067 5.26825 5.32786 5.45928 5.51530 5.64503 5.79220 5.90176 5.92957 6.04259 6.15733 6.19573 6.29229 6.43781 6.55118 6.76218 6.97580 7.05633 7.08960 7.50061 7.72392 8.11591 8.61643 8.68565 9.22251 9.88425 10.68951 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021890 B = 0.009482 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.810726 B = 2952.375920 C = 3913.605605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.111 4.111 3 C -0.109 4.109 4 C -0.105 4.105 5 C 0.162 3.838 6 N -0.361 5.361 7 C 0.498 3.502 8 O -0.551 6.551 9 C -0.162 4.162 10 C 0.137 3.863 11 N -0.423 5.423 12 C -0.242 4.242 13 H 0.098 0.902 14 C 0.052 3.948 15 N -0.872 5.872 16 Si 0.882 3.118 17 H -0.272 1.272 18 H -0.291 1.291 19 H -0.271 1.271 20 C -0.117 4.117 21 C -0.111 4.111 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.120 0.880 26 H 0.132 0.868 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.275 0.725 32 H 0.120 0.880 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 -4.465 4.688 7.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.112 4.112 3 C -0.128 4.128 4 C -0.125 4.125 5 C 0.069 3.931 6 N -0.163 5.163 7 C 0.286 3.714 8 O -0.430 6.430 9 C -0.202 4.202 10 C 0.013 3.987 11 N -0.238 5.238 12 C -0.372 4.372 13 H 0.115 0.885 14 C -0.155 4.155 15 N -0.510 5.510 16 Si 0.711 3.289 17 H -0.198 1.198 18 H -0.218 1.218 19 H -0.196 1.196 20 C -0.138 4.138 21 C -0.130 4.130 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.138 0.862 26 H 0.150 0.850 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.712 -4.695 4.973 7.781 hybrid contribution 0.829 0.772 0.566 1.266 sum -2.884 -3.923 5.539 7.374 Atomic orbital electron populations 1.20695 0.91679 1.02083 1.01824 1.19784 0.95656 0.93229 1.02540 1.20822 0.93515 0.97292 1.01152 1.21212 0.93929 0.97866 0.99535 1.17570 0.81410 0.93710 1.00401 1.45901 1.01700 1.37514 1.31145 1.20138 0.89288 0.81438 0.80556 1.90683 1.78235 1.38973 1.35072 1.22407 0.95521 1.01595 1.00670 1.21787 0.83645 0.96421 0.96827 1.45092 0.96683 1.49684 1.32381 1.18667 1.14885 0.97665 1.05977 0.88487 1.25531 0.98592 0.94474 0.96936 1.69725 1.41978 1.16817 1.22486 0.86907 0.81384 0.77993 0.82661 1.19834 1.21819 1.19580 1.20931 0.94112 0.96893 1.01865 1.20687 0.93164 0.97261 1.01901 0.91635 0.92083 0.91986 0.86195 0.84965 0.87654 0.88200 0.90875 0.93997 0.91431 0.86177 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.11 -1.77 5.88 -104.59 -0.62 -2.39 16 3 C -0.11 -1.91 9.69 -39.61 -0.38 -2.29 16 4 C -0.11 -2.19 8.68 -39.40 -0.34 -2.53 16 5 C 0.16 3.54 5.61 -83.70 -0.47 3.07 16 6 N -0.36 -8.21 3.58 -9.87 -0.04 -8.24 16 7 C 0.50 10.70 7.91 -11.07 -0.09 10.61 16 8 O -0.55 -12.75 16.82 5.55 0.09 -12.66 16 9 C -0.16 -2.81 6.96 -27.14 -0.19 -3.00 16 10 C 0.14 2.74 6.38 -3.30 -0.02 2.72 16 11 N -0.42 -9.98 3.53 -59.09 -0.21 -10.19 16 12 C -0.24 -6.30 8.43 -15.06 -0.13 -6.43 16 13 H 0.10 2.77 7.79 -52.48 -0.41 2.36 16 14 C 0.05 1.35 5.45 -17.43 -0.09 1.26 16 15 N -0.87 -23.97 13.97 55.49 0.78 -23.20 16 16 Si 0.88 20.12 24.83 -169.99 -4.22 15.90 16 17 H -0.27 -5.82 6.72 56.52 0.38 -5.44 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 C -0.12 -2.29 9.08 -39.39 -0.36 -2.65 16 21 C -0.11 -1.85 9.69 -39.61 -0.38 -2.23 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.63 8.08 -51.93 -0.42 0.22 16 24 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 25 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 26 H 0.13 2.95 7.30 -52.48 -0.38 2.57 16 27 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 28 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.04 0.86 3.51 -51.93 -0.18 0.68 16 31 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.12 2.33 7.66 -52.49 -0.40 1.93 16 33 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 276.87 15.07 4.17 4.17 Total: -1.00 -29.77 276.87 -6.04 -35.82 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.91 Total: 3.16 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.71 Total: -4.76 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.53 Total: -41.63 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.22 Total: 15.90 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.77 -6.04 -35.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261314507.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.996 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds