Wall clock time and date at job start Mon Mar 30 2020 03:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38281 * 119.92960 * 2 1 4 4 C 1.38109 * 120.06763 * 179.97438 * 3 2 1 5 5 C 1.38867 * 119.93226 * 359.97438 * 4 3 2 6 6 N 1.39925 * 120.07174 * 179.97438 * 5 4 3 7 7 C 1.34056 * 123.46490 * 132.42944 * 6 5 4 8 8 O 1.21292 * 125.58540 * 0.02572 * 7 6 5 9 9 C 1.51183 * 108.82436 * 180.02562 * 7 6 5 10 10 C 1.53980 * 104.31261 * 359.97438 * 9 7 6 11 11 N 1.39337 * 123.46422 * 312.43391 * 6 5 4 12 12 C 1.36939 * 125.33572 * 0.26442 * 11 6 5 13 13 H 1.08003 * 119.99876 * 324.29574 * 12 11 6 14 14 C 1.38807 * 120.00447 * 144.30008 * 12 11 6 15 15 N 1.31620 * 120.00191 * 161.79422 * 14 12 11 16 16 Si 1.86804 * 119.99782 * 341.79735 * 14 12 11 17 17 H 1.48502 * 109.47217 * 85.51430 * 16 14 12 18 18 H 1.48501 * 109.47097 * 205.51604 * 16 14 12 19 19 H 1.48499 * 109.46888 * 325.51575 * 16 14 12 20 20 C 1.38869 * 119.85929 * 0.25885 * 5 4 3 21 21 C 1.38116 * 119.92879 * 359.48665 * 20 5 4 22 22 H 1.08997 * 109.47078 * 89.99909 * 1 2 3 23 23 H 1.09002 * 109.47057 * 210.00284 * 1 2 3 24 24 H 1.08998 * 109.46803 * 330.00314 * 1 2 3 25 25 H 1.08004 * 119.96474 * 359.97438 * 3 2 1 26 26 H 1.08008 * 120.02957 * 180.02562 * 4 3 2 27 27 H 1.09004 * 110.46178 * 241.29427 * 9 7 6 28 28 H 1.09002 * 110.57620 * 118.76577 * 9 7 6 29 29 H 1.09007 * 110.43821 * 241.25435 * 10 9 7 30 30 H 1.08997 * 110.43728 * 118.74843 * 10 9 7 31 31 H 0.97005 * 120.00024 * 179.97438 * 15 14 12 32 32 H 1.07997 * 120.03763 * 179.72736 * 20 5 4 33 33 H 1.07997 * 119.96611 * 180.27325 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2017 0.0005 5 6 4.2739 0.0000 0.0016 6 7 5.6731 -0.0001 0.0016 7 6 6.4123 -0.7539 0.8277 8 8 5.9786 -1.5177 1.6642 9 6 7.8751 -0.4959 0.5459 10 6 7.8663 0.5417 -0.5918 11 7 6.4415 0.7834 -0.8570 12 6 5.9463 1.6479 -1.7966 13 1 5.0408 1.4028 -2.3318 14 6 6.6081 2.8390 -2.0612 15 7 6.3643 3.4936 -3.1767 16 14 7.8449 3.5128 -0.8341 17 1 9.1736 2.8974 -1.0817 18 1 7.9449 4.9862 -0.9903 19 1 7.3995 3.1904 0.5454 20 6 3.5781 -1.2018 -0.0033 21 6 2.1969 -1.1984 0.0015 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6552 2.1327 -0.0004 26 1 4.1163 2.1381 0.0010 27 1 8.3680 -1.4123 0.2215 28 1 8.3695 -0.0901 1.4285 29 1 8.3558 0.1386 -1.4784 30 1 8.3549 1.4619 -0.2714 31 1 6.8265 4.3262 -3.3615 32 1 4.1163 -2.1381 -0.0069 33 1 1.6552 -2.1327 0.0021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261314507.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:49 Heat of formation + Delta-G solvation = 38.688989 kcal Electronic energy + Delta-G solvation = -17877.663559 eV Core-core repulsion = 15097.828276 eV Total energy + Delta-G solvation = -2779.835283 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.85914 -39.78237 -38.11072 -35.09473 -34.52233 -32.01457 -31.78302 -31.43351 -27.37444 -26.10468 -24.30142 -23.52352 -22.77611 -20.92029 -19.80363 -18.31549 -17.47699 -17.06676 -16.60123 -16.36744 -15.92718 -15.69240 -14.91556 -14.75269 -14.54098 -14.51357 -14.36717 -14.16630 -13.64593 -13.44170 -12.98201 -12.85299 -12.69013 -12.47743 -12.21054 -12.15224 -11.92028 -11.25306 -11.05124 -10.73805 -9.89790 -9.56433 -8.43443 -8.37597 -5.85843 0.21485 0.44859 1.23219 1.33516 1.38388 1.47495 1.55574 2.22959 2.76397 2.88681 3.32879 3.70960 3.75405 3.92933 4.02483 4.06563 4.09346 4.47244 4.47504 4.52229 4.59415 4.84397 4.85140 4.91420 4.95364 5.10472 5.13278 5.36230 5.45016 5.51385 5.66154 5.82462 6.02676 6.11207 6.76261 6.97336 7.32811 8.00126 8.74280 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021890 B = 0.009482 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.810726 B = 2952.375920 C = 3913.605605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.099 4.099 3 C -0.113 4.113 4 C -0.127 4.127 5 C 0.122 3.878 6 N -0.369 5.369 7 C 0.489 3.511 8 O -0.574 6.574 9 C -0.147 4.147 10 C 0.126 3.874 11 N -0.436 5.436 12 C -0.241 4.241 13 H 0.054 0.946 14 C 0.010 3.990 15 N -0.917 5.917 16 Si 0.941 3.059 17 H -0.242 1.242 18 H -0.294 1.294 19 H -0.278 1.278 20 C -0.130 4.130 21 C -0.106 4.106 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.143 0.857 26 H 0.104 0.896 27 H 0.142 0.858 28 H 0.128 0.872 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.278 0.722 32 H 0.116 0.884 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 -5.495 5.909 8.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.100 4.100 3 C -0.132 4.132 4 C -0.148 4.148 5 C 0.030 3.970 6 N -0.172 5.172 7 C 0.278 3.722 8 O -0.454 6.454 9 C -0.186 4.186 10 C 0.004 3.996 11 N -0.253 5.253 12 C -0.371 4.371 13 H 0.071 0.929 14 C -0.193 4.193 15 N -0.558 5.558 16 Si 0.767 3.233 17 H -0.167 1.167 18 H -0.221 1.221 19 H -0.204 1.204 20 C -0.151 4.151 21 C -0.125 4.125 22 H 0.098 0.902 23 H 0.101 0.899 24 H 0.095 0.905 25 H 0.161 0.839 26 H 0.122 0.878 27 H 0.160 0.840 28 H 0.146 0.854 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.003 -5.736 6.190 9.340 hybrid contribution 0.713 0.958 0.190 1.209 sum -3.290 -4.778 6.379 8.623 Atomic orbital electron populations 1.20793 0.87978 1.04001 1.03251 1.20308 0.98182 0.92058 0.99459 1.21153 0.92288 0.99371 1.00344 1.21152 0.95520 0.96575 1.01527 1.17952 0.81445 0.94882 1.02728 1.45732 1.02353 1.37705 1.31458 1.20794 0.90933 0.80575 0.79892 1.90657 1.79086 1.39756 1.35924 1.22493 0.92895 1.02473 1.00752 1.22062 0.81632 0.97407 0.98532 1.44881 0.98095 1.48911 1.33374 1.18204 1.13529 0.98305 1.07104 0.92866 1.25986 1.00774 0.94448 0.98074 1.69827 1.44231 1.17643 1.24117 0.85968 0.80529 0.77111 0.79648 1.16653 1.22117 1.20381 1.21073 0.95592 0.95831 1.02563 1.21147 0.92044 0.99269 1.00006 0.90234 0.89868 0.90507 0.83913 0.87806 0.84036 0.85405 0.89534 0.93820 0.91253 0.86623 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 10.01 71.24 0.71 -1.32 16 2 C -0.10 -2.94 5.88 -19.84 -0.12 -3.05 16 3 C -0.11 -3.91 9.69 22.25 0.22 -3.70 16 4 C -0.13 -5.52 8.68 22.39 0.19 -5.33 16 5 C 0.12 5.50 5.61 38.15 0.21 5.71 16 6 N -0.37 -17.11 3.58 -303.92 -1.09 -18.19 16 7 C 0.49 20.69 7.91 87.92 0.70 21.39 16 8 O -0.57 -26.28 16.82 -3.07 -0.05 -26.33 16 9 C -0.15 -4.71 6.96 30.33 0.21 -4.49 16 10 C 0.13 4.85 6.38 86.63 0.55 5.40 16 11 N -0.44 -20.89 3.53 -340.87 -1.20 -22.09 16 12 C -0.24 -13.13 8.43 84.03 0.71 -12.42 16 13 H 0.05 3.29 7.79 -2.91 -0.02 3.26 16 14 C 0.01 0.55 5.45 84.86 0.46 1.01 16 15 N -0.92 -52.28 13.97 21.65 0.30 -51.98 16 16 Si 0.94 41.69 24.83 68.60 1.70 43.39 16 17 H -0.24 -9.47 6.72 99.48 0.67 -8.81 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 C -0.13 -5.09 9.08 22.39 0.20 -4.89 16 21 C -0.11 -3.32 9.69 22.25 0.22 -3.10 16 22 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 24 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 25 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 26 H 0.10 4.99 7.30 -2.91 -0.02 4.97 16 27 H 0.14 3.53 8.14 -2.38 -0.02 3.51 16 28 H 0.13 3.44 8.14 -2.39 -0.02 3.42 16 29 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 30 H 0.04 1.69 3.51 -2.39 -0.01 1.68 16 31 H 0.28 14.75 8.31 -92.70 -0.77 13.98 16 32 H 0.12 4.54 7.66 -2.91 -0.02 4.51 16 33 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -67.88 276.87 5.01 -62.87 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.07 Total: 17.14 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 4.27 Total: -4.81 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -1.99 Total: -92.27 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.05 Total: -26.33 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.70 Total: 43.39 kcal Total: -67.88 5.01 -62.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261314507.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.560 kcal (2) G-P(sol) polarization free energy of solvation -67.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds