Wall clock time and date at job start Mon Mar 30 2020 04:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46563 * 2 1 4 4 C 1.34881 * 125.36402 * 275.02408 * 3 2 1 5 5 O 1.21665 * 126.40634 * 359.96501 * 4 3 2 6 6 C 1.46716 * 107.19014 * 180.23313 * 4 3 2 7 7 C 1.40176 * 106.82045 * 359.62835 * 6 4 3 8 8 C 1.39128 * 119.57561 * 180.15171 * 7 6 4 9 9 C 1.38319 * 121.04204 * 0.28480 * 8 7 6 10 10 C 1.37759 * 121.50738 * 359.97245 * 9 8 7 11 11 C 1.40895 * 119.94480 * 0.02562 * 10 9 8 12 12 C 1.40851 * 120.69761 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99456 * 155.12319 * 12 11 10 14 14 C 1.40251 * 120.00362 * 335.11859 * 12 11 10 15 15 N 1.30641 * 119.99866 * 343.25622 * 14 12 11 16 16 Si 1.86793 * 120.00472 * 163.25537 * 14 12 11 17 17 H 1.48508 * 109.47289 * 94.79184 * 16 14 12 18 18 H 1.48492 * 109.47533 * 214.79509 * 16 14 12 19 19 H 1.48503 * 109.46795 * 334.79883 * 16 14 12 20 20 N 1.38557 * 107.33948 * 0.36990 * 7 6 4 21 21 C 1.46496 * 125.31156 * 179.74272 * 20 7 6 22 22 H 1.09008 * 109.47319 * 299.99865 * 1 2 3 23 23 H 1.09001 * 109.47483 * 59.99974 * 1 2 3 24 24 H 1.09008 * 109.46757 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46968 * 240.00183 * 2 1 3 26 26 H 1.08997 * 109.47773 * 119.99622 * 2 1 3 27 27 H 1.08003 * 119.47859 * 180.26213 * 8 7 6 28 28 H 1.07995 * 119.24224 * 179.97438 * 9 8 7 29 29 H 1.08001 * 120.02545 * 179.97438 * 10 9 8 30 30 H 0.97001 * 120.00270 * 179.97438 * 15 14 12 31 31 H 1.08998 * 109.46853 * 270.02291 * 21 20 7 32 32 H 1.09004 * 109.47211 * 30.02159 * 21 20 7 33 33 H 1.08999 * 109.46980 * 150.02270 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1875 2.1494 -1.0957 5 8 1.9658 1.8241 -2.2469 6 6 2.6952 3.4485 -0.6404 7 6 2.7947 3.3782 0.7561 8 6 3.2519 4.4824 1.4684 9 6 3.6050 5.6526 0.8209 10 6 3.5193 5.7715 -0.5489 11 6 3.0630 4.6855 -1.3219 12 6 2.9696 4.7895 -2.7235 13 1 3.0171 3.9007 -3.3352 14 6 2.8150 6.0472 -3.3247 15 7 2.4330 7.0709 -2.6087 16 14 3.1553 6.2586 -5.1492 17 1 1.8853 6.1287 -5.9079 18 1 3.7414 7.6013 -5.3912 19 1 4.1096 5.2135 -5.5990 20 7 2.3823 2.1112 1.1363 21 6 2.3353 1.6137 2.5133 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 3.3319 4.4252 2.5439 28 1 3.9559 6.4922 1.4025 29 1 3.8010 6.6967 -1.0297 30 1 2.3263 7.9409 -3.0243 31 1 3.2889 1.1494 2.7646 32 1 2.1451 2.4440 3.1934 33 1 1.5370 0.8775 2.6066 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261315735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:15 Heat of formation + Delta-G solvation = 45.570322 kcal Electronic energy + Delta-G solvation = -17778.779079 eV Core-core repulsion = 14999.242193 eV Total energy + Delta-G solvation = -2779.536886 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.11801 -36.57741 -35.95654 -33.90683 -32.87022 -31.02566 -29.44243 -28.56740 -25.40833 -24.86539 -23.42856 -20.92963 -20.75356 -19.13865 -17.11602 -16.56274 -15.87599 -15.39125 -14.99881 -14.66848 -14.10273 -13.54571 -13.34031 -13.16407 -13.04194 -12.61898 -12.49323 -12.17832 -11.80213 -11.62242 -11.25978 -11.14634 -11.06388 -10.95377 -10.58452 -10.10251 -9.92579 -9.78485 -9.24956 -8.53158 -7.95747 -7.46226 -6.93907 -6.33710 -4.46367 2.41116 2.43250 2.90458 3.04920 3.12424 3.27543 3.87656 4.12923 4.37370 4.55643 5.03920 5.23579 5.32964 5.47657 5.52011 5.65740 5.69796 5.77573 5.88293 6.06326 6.31252 6.35855 6.56903 6.65368 6.91828 6.99815 7.13794 7.35787 7.56759 7.81858 7.96433 8.11551 8.34275 8.44849 8.60848 8.77448 8.91263 9.35953 9.97358 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025535 B = 0.008228 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.288826 B = 3402.241101 C = 4312.289548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.137 3.863 3 N -0.431 5.431 4 C 0.561 3.439 5 O -0.555 6.555 6 C -0.339 4.339 7 C 0.235 3.765 8 C -0.300 4.300 9 C -0.039 4.039 10 C -0.214 4.214 11 C 0.189 3.811 12 C -0.414 4.414 13 H 0.095 0.905 14 C 0.073 3.927 15 N -0.766 5.766 16 Si 0.916 3.084 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.255 1.255 20 N -0.437 5.437 21 C 0.124 3.876 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.286 0.714 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 -6.234 6.687 9.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 N -0.253 5.253 4 C 0.360 3.640 5 O -0.435 6.435 6 C -0.348 4.348 7 C 0.131 3.869 8 C -0.325 4.325 9 C -0.059 4.059 10 C -0.234 4.234 11 C 0.184 3.816 12 C -0.441 4.441 13 H 0.113 0.887 14 C -0.149 4.149 15 N -0.388 5.388 16 Si 0.739 3.261 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.179 1.179 20 N -0.240 5.240 21 C -0.019 4.019 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.140 0.860 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.859 -6.491 6.172 8.998 hybrid contribution -0.069 0.037 -0.381 0.389 sum -0.928 -6.454 5.791 8.721 Atomic orbital electron populations 1.22238 0.95855 1.01802 1.03020 1.21330 0.94291 0.79971 1.02916 1.47783 1.66964 1.10973 0.99598 1.17853 0.78453 0.85143 0.82564 1.90695 1.57291 1.78364 1.17107 1.20638 1.24424 0.97780 0.91916 1.17977 0.92600 0.82687 0.93594 1.18972 1.23269 0.93550 0.96718 1.20333 0.96254 0.94587 0.94695 1.21142 1.09630 1.00311 0.92354 1.17904 0.83952 0.87334 0.92367 1.19979 1.37902 0.93727 0.92502 0.88709 1.26194 0.91875 0.95141 1.01663 1.69774 1.28613 1.01711 1.38742 0.86154 0.80045 0.78763 0.81121 1.19138 1.19770 1.17893 1.45557 1.71066 1.09319 0.98057 1.21478 1.00928 1.00257 0.79230 0.92653 0.91576 0.91568 0.89285 0.90804 0.89399 0.88743 0.85975 0.90267 0.93357 0.90078 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.14 2.11 6.44 -4.04 -0.03 2.09 16 3 N -0.43 -9.00 3.58 -61.59 -0.22 -9.22 16 4 C 0.56 14.54 8.11 -12.79 -0.10 14.43 16 5 O -0.55 -15.59 17.16 5.22 0.09 -15.50 16 6 C -0.34 -9.11 6.37 -102.66 -0.65 -9.76 16 7 C 0.23 5.51 6.86 -83.76 -0.57 4.94 16 8 C -0.30 -6.64 9.93 -39.22 -0.39 -7.03 16 9 C -0.04 -0.89 9.94 -39.73 -0.40 -1.28 16 10 C -0.21 -5.50 8.72 -38.75 -0.34 -5.84 16 11 C 0.19 5.26 5.72 -104.82 -0.60 4.66 16 12 C -0.41 -11.51 8.94 -37.84 -0.34 -11.84 16 13 H 0.09 2.73 7.30 -52.48 -0.38 2.35 16 14 C 0.07 1.84 5.18 -17.30 -0.09 1.75 16 15 N -0.77 -19.26 10.94 55.56 0.61 -18.65 16 16 Si 0.92 18.86 29.59 -169.99 -5.03 13.83 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 20 N -0.44 -8.68 4.09 -65.29 -0.27 -8.94 16 21 C 0.12 1.68 10.70 59.84 0.64 2.32 16 22 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.07 0.90 7.37 -51.93 -0.38 0.52 16 27 H 0.09 1.67 8.05 -52.48 -0.42 1.25 16 28 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.12 3.16 6.18 -52.49 -0.32 2.83 16 30 H 0.29 6.41 8.29 -40.82 -0.34 6.08 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 33 H 0.06 0.72 7.50 -51.93 -0.39 0.33 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -31.82 285.41 -7.00 -38.82 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -3.99 Total: 2.89 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.49 Total: -7.54 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.12 Total: -36.81 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.09 Total: -15.50 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.82 -7.00 -38.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261315735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.394 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds