Wall clock time and date at job start Mon Mar 30 2020 04:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46563 * 2 1 4 4 C 1.34881 * 125.36402 * 275.02408 * 3 2 1 5 5 O 1.21665 * 126.40634 * 359.96501 * 4 3 2 6 6 C 1.46716 * 107.19014 * 180.23313 * 4 3 2 7 7 C 1.40176 * 106.82045 * 359.62835 * 6 4 3 8 8 C 1.39128 * 119.57561 * 180.15171 * 7 6 4 9 9 C 1.38319 * 121.04204 * 0.28480 * 8 7 6 10 10 C 1.37759 * 121.50738 * 359.97245 * 9 8 7 11 11 C 1.40895 * 119.94480 * 0.02562 * 10 9 8 12 12 C 1.40851 * 120.69761 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99456 * 155.12319 * 12 11 10 14 14 C 1.40251 * 120.00362 * 335.11859 * 12 11 10 15 15 N 1.30641 * 119.99866 * 343.25622 * 14 12 11 16 16 Si 1.86793 * 120.00472 * 163.25537 * 14 12 11 17 17 H 1.48508 * 109.47289 * 94.79184 * 16 14 12 18 18 H 1.48492 * 109.47533 * 214.79509 * 16 14 12 19 19 H 1.48503 * 109.46795 * 334.79883 * 16 14 12 20 20 N 1.38557 * 107.33948 * 0.36990 * 7 6 4 21 21 C 1.46496 * 125.31156 * 179.74272 * 20 7 6 22 22 H 1.09008 * 109.47319 * 299.99865 * 1 2 3 23 23 H 1.09001 * 109.47483 * 59.99974 * 1 2 3 24 24 H 1.09008 * 109.46757 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46968 * 240.00183 * 2 1 3 26 26 H 1.08997 * 109.47773 * 119.99622 * 2 1 3 27 27 H 1.08003 * 119.47859 * 180.26213 * 8 7 6 28 28 H 1.07995 * 119.24224 * 179.97438 * 9 8 7 29 29 H 1.08001 * 120.02545 * 179.97438 * 10 9 8 30 30 H 0.97001 * 120.00270 * 179.97438 * 15 14 12 31 31 H 1.08998 * 109.46853 * 270.02291 * 21 20 7 32 32 H 1.09004 * 109.47211 * 30.02159 * 21 20 7 33 33 H 1.08999 * 109.46980 * 150.02270 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1875 2.1494 -1.0957 5 8 1.9658 1.8241 -2.2469 6 6 2.6952 3.4485 -0.6404 7 6 2.7947 3.3782 0.7561 8 6 3.2519 4.4824 1.4684 9 6 3.6050 5.6526 0.8209 10 6 3.5193 5.7715 -0.5489 11 6 3.0630 4.6855 -1.3219 12 6 2.9696 4.7895 -2.7235 13 1 3.0171 3.9007 -3.3352 14 6 2.8150 6.0472 -3.3247 15 7 2.4330 7.0709 -2.6087 16 14 3.1553 6.2586 -5.1492 17 1 1.8853 6.1287 -5.9079 18 1 3.7414 7.6013 -5.3912 19 1 4.1096 5.2135 -5.5990 20 7 2.3823 2.1112 1.1363 21 6 2.3353 1.6137 2.5133 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 3.3319 4.4252 2.5439 28 1 3.9559 6.4922 1.4025 29 1 3.8010 6.6967 -1.0297 30 1 2.3263 7.9409 -3.0243 31 1 3.2889 1.1494 2.7646 32 1 2.1451 2.4440 3.1934 33 1 1.5370 0.8775 2.6066 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261315735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:14 Heat of formation + Delta-G solvation = 25.088962 kcal Electronic energy + Delta-G solvation = -17779.667217 eV Core-core repulsion = 14999.242193 eV Total energy + Delta-G solvation = -2780.425024 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.86815 -38.44602 -37.78077 -35.67295 -34.38876 -32.60157 -31.24186 -30.18830 -27.26959 -26.31907 -24.99605 -22.62831 -22.49256 -20.90643 -18.96405 -18.17712 -17.68526 -17.10795 -16.65720 -16.34826 -15.77157 -14.97385 -14.83690 -14.81209 -14.64159 -14.38982 -13.90295 -13.56656 -13.38094 -13.15866 -12.89270 -12.79300 -12.75555 -12.24397 -12.22698 -11.95037 -11.64446 -11.58074 -11.08113 -10.45789 -9.73825 -9.35831 -8.79709 -8.09006 -6.44168 0.54182 0.89356 1.12758 1.33939 1.47477 1.54727 2.17391 2.21174 2.65596 2.85705 3.69875 3.84833 4.12735 4.14390 4.25745 4.33267 4.54035 4.58758 4.70509 4.73122 4.77642 4.87735 4.96181 5.02718 5.15562 5.23127 5.27181 5.51322 5.72346 5.92741 6.09906 6.21821 6.45366 6.71837 6.75198 6.86847 7.01552 7.48508 8.14765 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025535 B = 0.008228 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.288826 B = 3402.241101 C = 4312.289548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 N -0.423 5.423 4 C 0.538 3.462 5 O -0.600 6.600 6 C -0.387 4.387 7 C 0.230 3.770 8 C -0.289 4.289 9 C -0.030 4.030 10 C -0.245 4.245 11 C 0.159 3.841 12 C -0.461 4.461 13 H 0.064 0.936 14 C 0.039 3.961 15 N -0.789 5.789 16 Si 0.983 3.017 17 H -0.263 1.263 18 H -0.246 1.246 19 H -0.265 1.265 20 N -0.427 5.427 21 C 0.110 3.890 22 H 0.061 0.939 23 H 0.028 0.972 24 H 0.107 0.893 25 H 0.083 0.917 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.111 0.889 30 H 0.299 0.701 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 -7.035 9.519 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.006 3.994 3 N -0.243 5.243 4 C 0.335 3.665 5 O -0.484 6.484 6 C -0.396 4.396 7 C 0.123 3.877 8 C -0.314 4.314 9 C -0.050 4.050 10 C -0.266 4.266 11 C 0.155 3.845 12 C -0.488 4.488 13 H 0.082 0.918 14 C -0.180 4.180 15 N -0.412 5.412 16 Si 0.803 3.197 17 H -0.188 1.188 18 H -0.169 1.169 19 H -0.189 1.189 20 N -0.229 5.229 21 C -0.029 4.029 22 H 0.080 0.920 23 H 0.047 0.953 24 H 0.126 0.874 25 H 0.101 0.899 26 H 0.139 0.861 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.935 -7.350 9.105 11.739 hybrid contribution -0.082 0.138 -1.001 1.014 sum -1.017 -7.213 8.104 10.896 Atomic orbital electron populations 1.22175 0.94378 1.04006 1.01464 1.21825 0.95456 0.77157 1.04933 1.47897 1.65181 1.12121 0.99067 1.17987 0.79226 0.85994 0.83250 1.90632 1.59403 1.79338 1.19011 1.21125 1.25796 0.98355 0.94335 1.18221 0.92278 0.84695 0.92461 1.19411 1.20975 0.92299 0.98691 1.20763 0.94392 0.96102 0.93749 1.21104 1.11950 0.99722 0.93831 1.18326 0.84484 0.88800 0.92934 1.19957 1.41704 0.94076 0.93040 0.91773 1.26897 0.91089 0.94066 1.05984 1.69759 1.28578 1.02302 1.40580 0.85190 0.79710 0.79464 0.75366 1.18770 1.16912 1.18930 1.46042 1.69265 1.08114 0.99495 1.22038 1.03523 1.01944 0.75441 0.91953 0.95311 0.87438 0.89860 0.86144 0.85056 0.85056 0.87068 0.89016 0.90926 0.88198 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 10.24 71.98 0.74 -3.38 16 2 C 0.13 3.59 6.44 86.38 0.56 4.14 16 3 N -0.42 -17.29 3.58 -466.93 -1.67 -18.96 16 4 C 0.54 29.06 8.11 86.44 0.70 29.76 16 5 O -0.60 -36.12 17.16 -4.24 -0.07 -36.19 16 6 C -0.39 -21.63 6.37 -18.59 -0.12 -21.74 16 7 C 0.23 10.54 6.86 38.76 0.27 10.81 16 8 C -0.29 -11.98 9.93 22.50 0.22 -11.75 16 9 C -0.03 -1.35 9.94 22.18 0.22 -1.13 16 10 C -0.25 -12.99 8.72 22.81 0.20 -12.79 16 11 C 0.16 9.36 5.72 -19.99 -0.11 9.24 16 12 C -0.46 -27.60 8.94 23.40 0.21 -27.39 16 13 H 0.06 4.08 7.30 -2.91 -0.02 4.06 16 14 C 0.04 2.06 5.18 85.36 0.44 2.51 16 15 N -0.79 -41.14 10.94 21.88 0.24 -40.90 16 16 Si 0.98 40.32 29.59 68.60 2.03 42.35 16 17 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 18 H -0.25 -8.92 7.11 99.48 0.71 -8.22 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 N -0.43 -15.83 4.09 -360.49 -1.47 -17.30 16 21 C 0.11 2.41 10.70 127.77 1.37 3.77 16 22 H 0.06 1.49 8.14 -2.38 -0.02 1.48 16 23 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 25 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.12 2.34 7.37 -2.39 -0.02 2.33 16 27 H 0.13 4.28 8.05 -2.91 -0.02 4.26 16 28 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 29 H 0.11 5.99 6.18 -2.91 -0.02 5.97 16 30 H 0.30 13.63 8.29 -92.71 -0.77 12.87 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 1.90 8.12 -2.38 -0.02 1.88 16 33 H 0.09 1.55 7.50 -2.39 -0.02 1.53 16 Total: -1.00 -76.63 285.41 4.85 -71.78 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.11 Total: 17.18 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 4.69 Total: -17.96 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -2.91 Total: -77.16 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.07 Total: -36.19 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -76.63 4.85 -71.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261315735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.867 kcal (2) G-P(sol) polarization free energy of solvation -76.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds