Wall clock time and date at job start Mon Mar 30 2020 04:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46491 * 109.47265 * 2 1 4 4 C 1.34847 * 125.26484 * 275.15127 * 3 2 1 5 5 O 1.21587 * 126.47617 * 0.02562 * 4 3 2 6 6 C 1.47502 * 107.04964 * 180.26729 * 4 3 2 7 7 C 1.38586 * 133.43597 * 179.75529 * 6 4 3 8 8 C 1.40630 * 119.37798 * 180.02562 * 7 6 4 9 9 C 1.41222 * 120.10710 * 179.97438 * 8 7 6 10 10 H 1.07992 * 120.00125 * 204.60491 * 9 8 7 11 11 C 1.39855 * 119.99675 * 24.61300 * 9 8 7 12 12 N 1.30900 * 120.00038 * 17.94763 * 11 9 8 13 13 Si 1.86803 * 119.99562 * 197.94819 * 11 9 8 14 14 H 1.48501 * 109.47064 * 90.00005 * 13 11 9 15 15 H 1.48506 * 109.46619 * 209.99752 * 13 11 9 16 16 H 1.48497 * 109.47510 * 329.99620 * 13 11 9 17 17 C 1.41031 * 119.78419 * 359.97438 * 8 7 6 18 18 C 1.36223 * 120.46948 * 359.97438 * 17 8 7 19 19 C 1.39471 * 120.39318 * 0.02562 * 18 17 8 20 20 N 1.38035 * 132.75198 * 179.97438 * 19 18 17 21 21 C 1.46498 * 125.17981 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.46858 * 300.00029 * 1 2 3 23 23 H 1.08997 * 109.46965 * 60.00184 * 1 2 3 24 24 H 1.08997 * 109.47150 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47319 * 239.99355 * 2 1 3 26 26 H 1.09010 * 109.47157 * 119.99939 * 2 1 3 27 27 H 1.08003 * 120.31146 * 0.02562 * 7 6 4 28 28 H 0.97006 * 119.99723 * 180.02562 * 12 11 9 29 29 H 1.08003 * 119.76845 * 180.02562 * 17 8 7 30 30 H 1.07995 * 119.80361 * 180.02562 * 18 17 8 31 31 H 1.09001 * 109.46758 * 0.02591 * 21 20 19 32 32 H 1.09006 * 109.46949 * 120.02033 * 21 20 19 33 33 H 1.08995 * 109.47687 * 240.02208 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1847 2.1481 -1.0966 5 8 1.9595 1.8236 -2.2465 6 6 2.6969 3.4530 -0.6380 7 6 3.0545 4.6202 -1.2940 8 6 3.5198 5.7169 -0.5466 9 6 3.8889 6.9136 -1.1994 10 1 4.5912 7.5885 -0.7332 11 6 3.3446 7.2246 -2.4496 12 7 2.2581 6.6203 -2.8592 13 14 4.1683 8.5026 -3.5350 14 1 5.1662 7.8385 -4.4115 15 1 3.1431 9.1750 -4.3729 16 1 4.8501 9.5101 -2.6833 17 6 3.6165 5.6178 0.8568 18 6 3.2620 4.4672 1.4941 19 6 2.7989 3.3713 0.7662 20 7 2.3797 2.1095 1.1372 21 6 2.3293 1.6072 2.5124 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8901 27 1 2.9767 4.6870 -2.3692 28 1 1.8808 6.8358 -3.7265 29 1 3.9735 6.4603 1.4306 30 1 3.3400 4.4032 2.5693 31 1 2.6732 2.3838 3.1956 32 1 1.3043 1.3321 2.7614 33 1 2.9727 0.7321 2.6035 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261340700.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:16 Heat of formation + Delta-G solvation = 48.177865 kcal Electronic energy + Delta-G solvation = -17605.252367 eV Core-core repulsion = 14825.828553 eV Total energy + Delta-G solvation = -2779.423814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.39790 -37.02924 -36.20677 -33.93162 -32.74266 -31.28289 -29.27648 -28.90421 -26.18839 -24.16522 -23.77056 -21.19458 -20.76963 -19.10033 -17.52200 -16.59397 -16.11861 -15.48346 -15.03431 -14.74759 -14.11327 -13.71492 -13.46816 -13.21358 -13.06377 -12.66726 -12.63798 -12.32939 -11.97909 -11.67645 -11.45984 -11.17663 -11.10111 -11.05163 -10.60867 -10.16387 -10.04677 -9.78217 -9.10391 -8.86193 -8.05192 -7.71313 -6.70902 -6.51099 -4.16146 2.23896 2.29381 2.82325 3.14566 3.17488 3.20978 3.82766 4.01268 4.24499 4.66149 4.93347 5.19912 5.20309 5.34342 5.46113 5.55656 5.63040 5.65632 5.73177 5.91300 5.95520 6.20441 6.35421 6.70263 6.71651 6.95927 7.22026 7.40629 7.47604 7.51960 7.89147 8.11263 8.25405 8.32403 8.58606 8.90817 8.91491 8.98399 10.29315 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033341 B = 0.006732 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.600799 B = 4158.436328 C = 4830.513202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.134 3.866 3 N -0.416 5.416 4 C 0.554 3.446 5 O -0.547 6.547 6 C -0.199 4.199 7 C -0.061 4.061 8 C 0.071 3.929 9 C -0.464 4.464 10 H 0.079 0.921 11 C 0.073 3.927 12 N -0.797 5.797 13 Si 0.908 3.092 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.263 1.263 17 C -0.152 4.152 18 C -0.136 4.136 19 C 0.088 3.912 20 N -0.436 5.436 21 C 0.128 3.872 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.129 0.871 28 H 0.281 0.719 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.722 -8.061 8.031 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 N -0.236 5.236 4 C 0.348 3.652 5 O -0.425 6.425 6 C -0.206 4.206 7 C -0.082 4.082 8 C 0.068 3.932 9 C -0.494 4.494 10 H 0.097 0.903 11 C -0.144 4.144 12 N -0.423 5.423 13 Si 0.732 3.268 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.187 1.187 17 C -0.173 4.173 18 C -0.159 4.159 19 C -0.012 4.012 20 N -0.244 5.244 21 C -0.015 4.015 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.147 0.853 28 H 0.092 0.908 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.117 -8.540 7.342 11.317 hybrid contribution 0.128 0.413 -0.303 0.528 sum -0.988 -8.127 7.040 10.797 Atomic orbital electron populations 1.22226 0.95533 1.02061 1.03103 1.21420 0.94545 0.79564 1.03240 1.47633 1.65094 1.10976 0.99881 1.18259 0.78557 0.85554 0.82866 1.90725 1.56170 1.78275 1.17317 1.19898 1.11876 0.95690 0.93087 1.20932 0.98557 0.88545 1.00173 1.17439 0.92589 0.92754 0.90451 1.19363 1.23704 1.04470 1.01881 0.90297 1.25863 0.93540 0.96878 0.98112 1.69824 1.15242 1.37659 1.19581 0.86324 0.79790 0.80612 0.80024 1.19362 1.20463 1.18747 1.20672 1.05952 0.96101 0.94540 1.19192 1.07547 0.92162 0.96986 1.17809 1.05138 0.84866 0.93413 1.45049 1.72734 1.09160 0.97430 1.21423 1.00757 1.00083 0.79232 0.92440 0.91620 0.91334 0.89150 0.90384 0.85300 0.90777 0.87669 0.88645 0.89180 0.93247 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 2 C 0.13 1.90 6.60 -4.05 -0.03 1.87 16 3 N -0.42 -8.07 3.58 -61.35 -0.22 -8.29 16 4 C 0.55 13.42 8.19 -12.45 -0.10 13.32 16 5 O -0.55 -14.45 17.88 5.29 0.09 -14.36 16 6 C -0.20 -5.04 6.34 -104.94 -0.67 -5.70 16 7 C -0.06 -1.65 8.74 -38.55 -0.34 -1.99 16 8 C 0.07 1.86 5.57 -106.80 -0.60 1.26 16 9 C -0.46 -12.11 9.03 -37.84 -0.34 -12.45 16 10 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 11 C 0.07 1.86 5.13 -17.34 -0.09 1.77 16 12 N -0.80 -21.33 10.96 55.54 0.61 -20.72 16 13 Si 0.91 18.97 29.60 -169.99 -5.03 13.94 16 14 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 15 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 17 C -0.15 -3.48 9.70 -39.25 -0.38 -3.86 16 18 C -0.14 -2.83 9.72 -39.85 -0.39 -3.22 16 19 C 0.09 1.94 6.87 -83.56 -0.57 1.36 16 20 N -0.44 -8.10 4.07 -65.10 -0.26 -8.37 16 21 C 0.13 1.61 10.55 59.85 0.63 2.24 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.08 0.87 7.59 -51.92 -0.39 0.47 16 27 H 0.13 3.75 6.17 -52.48 -0.32 3.43 16 28 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 29 H 0.11 2.18 8.06 -52.48 -0.42 1.75 16 30 H 0.10 1.63 7.49 -52.49 -0.39 1.24 16 31 H 0.09 1.02 7.27 -51.93 -0.38 0.64 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 LS Contribution 285.68 15.07 4.31 4.31 Total: -1.00 -31.35 285.68 -6.99 -38.34 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.99 Total: 2.35 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.49 Total: -7.20 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.12 Total: -37.38 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.09 Total: -14.36 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.35 -6.99 -38.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261340700.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.521 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds