Wall clock time and date at job start Mon Mar 30 2020 04:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34842 * 125.30883 * 2 1 4 4 O 1.21597 * 126.40673 * 0.02562 * 3 2 1 5 5 C 1.47376 * 107.18712 * 179.97438 * 3 2 1 6 6 C 1.39330 * 133.50517 * 180.02562 * 5 3 2 7 7 C 1.37894 * 119.71292 * 179.97438 * 6 5 3 8 8 C 1.38619 * 120.31968 * 0.02562 * 7 6 5 9 9 C 1.38021 * 120.55678 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.02442 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47544 * 265.00089 * 10 9 8 12 12 H 1.08003 * 119.99487 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00216 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99655 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00150 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46952 * 90.00019 * 15 13 11 17 17 H 1.48501 * 109.46979 * 210.00041 * 15 13 11 18 18 H 1.48498 * 109.47113 * 329.99911 * 15 13 11 19 19 C 1.38803 * 119.95132 * 359.71413 * 9 8 7 20 20 N 1.38617 * 133.04381 * 179.59095 * 19 9 8 21 21 C 1.46499 * 125.28245 * 0.73176 * 20 19 9 22 22 H 1.08996 * 109.47179 * 270.04232 * 1 2 3 23 23 H 1.09007 * 109.46791 * 30.03635 * 1 2 3 24 24 H 1.08996 * 109.46912 * 150.03445 * 1 2 3 25 25 H 1.08000 * 120.14361 * 359.97438 * 6 5 3 26 26 H 1.07993 * 119.83872 * 180.02562 * 7 6 5 27 27 H 1.07995 * 119.71995 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.46999 * 25.00140 * 10 9 8 29 29 H 1.09002 * 109.47387 * 145.00322 * 10 9 8 30 30 H 0.97007 * 120.00189 * 180.02562 * 14 13 11 31 31 H 1.09002 * 109.47391 * 179.71659 * 21 20 19 32 32 H 1.09001 * 109.46813 * 59.71716 * 21 20 19 33 33 H 1.09004 * 109.47041 * 299.71843 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2444 1.1004 0.0000 4 8 1.8629 2.2550 0.0004 5 6 3.6451 0.6420 0.0006 6 6 4.8710 1.3041 0.0014 7 6 6.0415 0.5751 0.0024 8 6 6.0029 -0.8105 0.0021 9 6 4.7953 -1.4789 0.0014 10 6 4.7674 -2.9856 0.0017 11 6 4.6353 -3.4860 -1.4137 12 1 4.5778 -2.7832 -2.2317 13 6 4.5890 -4.8410 -1.6644 14 7 4.4742 -5.2775 -2.8996 15 14 4.6892 -6.0566 -0.2496 16 1 3.3211 -6.3533 0.2459 17 1 5.3284 -7.3118 -0.7198 18 1 5.4977 -5.4711 0.8498 19 6 3.6067 -0.7622 0.0069 20 7 2.2733 -1.1412 0.0005 21 6 1.7864 -2.5229 0.0002 22 1 -0.3633 0.0008 1.0276 23 1 -0.3633 0.8897 -0.5144 24 1 -0.3633 -0.8903 -0.5133 25 1 4.9044 2.3836 0.0011 26 1 6.9928 1.0862 0.0033 27 1 6.9256 -1.3718 0.0025 28 1 5.6916 -3.3661 0.4368 29 1 3.9186 -3.3332 0.5906 30 1 4.4412 -6.2308 -3.0760 31 1 0.6963 -2.5240 -0.0004 32 1 2.1497 -3.0363 0.8904 33 1 2.1508 -3.0364 -0.8896 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261358486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:27 Heat of formation + Delta-G solvation = 56.646022 kcal Electronic energy + Delta-G solvation = -17829.952444 eV Core-core repulsion = 15050.895837 eV Total energy + Delta-G solvation = -2779.056607 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.06591 -37.80066 -36.59410 -33.76840 -32.43974 -31.68810 -30.48580 -27.97402 -27.14736 -24.88537 -23.07942 -21.80744 -21.39579 -19.10309 -17.14209 -16.90311 -16.67579 -15.94417 -15.61878 -14.63168 -14.30445 -14.12617 -13.77134 -13.57520 -13.19668 -13.09371 -12.70635 -12.36140 -12.29238 -12.04464 -11.72927 -11.35930 -11.21186 -10.66842 -10.52186 -10.17580 -10.14513 -9.56238 -9.41755 -8.70545 -8.69787 -8.23399 -6.78230 -6.19110 -4.18730 1.44951 1.87067 2.04617 3.14995 3.21995 3.27080 3.28766 3.84376 4.28795 4.35926 4.78912 5.09236 5.11240 5.22427 5.28580 5.36362 5.47467 5.59450 5.69567 5.73458 5.84351 6.08135 6.23939 6.28065 6.50584 6.58481 6.79957 6.90206 6.98270 7.28005 7.33705 7.53761 7.67027 7.80609 8.38726 8.43239 8.87815 9.40371 10.93221 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024632 B = 0.008352 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.472118 B = 3351.697074 C = 4106.610241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.415 5.415 3 C 0.555 3.445 4 O -0.546 6.546 5 C -0.244 4.244 6 C -0.031 4.031 7 C -0.175 4.175 8 C -0.057 4.057 9 C -0.077 4.077 10 C 0.016 3.984 11 C -0.512 4.512 12 H 0.074 0.926 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.871 3.129 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.263 1.263 19 C 0.218 3.782 20 N -0.410 5.410 21 C 0.106 3.894 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.129 0.871 28 H 0.031 0.969 29 H 0.022 0.978 30 H 0.265 0.735 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 5.715 7.380 10.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.234 5.234 3 C 0.348 3.652 4 O -0.424 6.424 5 C -0.253 4.253 6 C -0.050 4.050 7 C -0.195 4.195 8 C -0.077 4.077 9 C -0.081 4.081 10 C -0.021 4.021 11 C -0.550 4.550 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.534 5.534 15 Si 0.698 3.302 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.188 1.188 19 C 0.110 3.890 20 N -0.209 5.209 21 C -0.034 4.034 22 H 0.083 0.917 23 H 0.111 0.889 24 H 0.098 0.902 25 H 0.139 0.861 26 H 0.140 0.860 27 H 0.146 0.854 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.627 5.992 7.260 10.489 hybrid contribution -0.136 -1.004 0.513 1.135 sum -4.763 4.989 7.772 10.391 Atomic orbital electron populations 1.21771 0.75013 1.04303 1.02695 1.47630 1.03885 0.99163 1.72678 1.17851 0.86217 0.83171 0.77996 1.90766 1.79959 1.16638 1.55052 1.19921 0.93976 0.93215 1.18142 1.20299 0.89727 0.99156 0.95845 1.20811 0.97319 0.94005 1.07368 1.20928 0.96848 0.93715 0.96169 1.19247 0.88798 0.97548 1.02542 1.18846 0.97661 0.86990 0.98603 1.20950 1.50794 0.92348 0.90933 0.90796 1.24991 0.94581 0.98171 0.95308 1.69900 1.49896 1.14664 1.18909 0.86920 0.78832 0.81182 0.83316 1.20176 1.21161 1.18780 1.18030 0.83272 0.92355 0.95335 1.45888 0.99270 0.98231 1.77547 1.22165 0.99310 0.76528 1.05425 0.91702 0.88876 0.90170 0.86111 0.86006 0.85353 0.95086 0.95991 0.92514 0.91114 0.90963 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.24 10.73 59.85 0.64 1.88 16 2 N -0.41 -7.11 3.98 -68.18 -0.27 -7.38 16 3 C 0.55 10.90 8.17 -12.51 -0.10 10.80 16 4 O -0.55 -11.62 17.82 5.28 0.09 -11.53 16 5 C -0.24 -4.76 6.35 -104.93 -0.67 -5.42 16 6 C -0.03 -0.53 10.10 -39.30 -0.40 -0.92 16 7 C -0.18 -2.79 10.03 -39.57 -0.40 -3.18 16 8 C -0.06 -1.01 9.66 -39.52 -0.38 -1.39 16 9 C -0.08 -1.55 5.08 -104.49 -0.53 -2.08 16 10 C 0.02 0.35 3.55 -29.03 -0.10 0.25 16 11 C -0.51 -13.19 8.36 -34.44 -0.29 -13.47 16 12 H 0.07 2.16 7.98 -52.48 -0.42 1.74 16 13 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 14 N -0.90 -25.63 13.96 55.43 0.77 -24.86 16 15 Si 0.87 19.56 27.47 -169.99 -4.67 14.89 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 19 C 0.22 4.33 6.79 -83.74 -0.57 3.77 16 20 N -0.41 -7.46 4.09 -65.28 -0.27 -7.73 16 21 C 0.11 1.69 9.55 59.85 0.57 2.26 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.09 1.07 8.05 -51.92 -0.42 0.65 16 24 H 0.08 0.80 6.98 -51.93 -0.36 0.44 16 25 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 26 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 28 H 0.03 0.67 7.11 -51.93 -0.37 0.30 16 29 H 0.02 0.46 4.86 -51.93 -0.25 0.20 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.07 0.86 6.60 -51.93 -0.34 0.52 16 32 H 0.07 1.10 6.75 -51.93 -0.35 0.75 16 33 H 0.10 1.98 6.72 -51.93 -0.35 1.63 16 LS Contribution 277.57 15.07 4.18 4.18 Total: -1.00 -31.52 277.57 -6.20 -37.72 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -3.72 Total: 0.42 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.32 Total: -5.72 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.24 Total: -39.97 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.67 Total: 14.89 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.52 -6.20 -37.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261358486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.365 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds