Wall clock time and date at job start Mon Mar 30 2020 04:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34842 * 125.30883 * 2 1 4 4 O 1.21597 * 126.40673 * 0.02562 * 3 2 1 5 5 C 1.47376 * 107.18712 * 179.97438 * 3 2 1 6 6 C 1.39330 * 133.50517 * 180.02562 * 5 3 2 7 7 C 1.37894 * 119.71292 * 179.97438 * 6 5 3 8 8 C 1.38619 * 120.31968 * 0.02562 * 7 6 5 9 9 C 1.38021 * 120.55678 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.02442 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47544 * 265.00089 * 10 9 8 12 12 H 1.08003 * 119.99487 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00216 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99655 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00150 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46952 * 90.00019 * 15 13 11 17 17 H 1.48501 * 109.46979 * 210.00041 * 15 13 11 18 18 H 1.48498 * 109.47113 * 329.99911 * 15 13 11 19 19 C 1.38803 * 119.95132 * 359.71413 * 9 8 7 20 20 N 1.38617 * 133.04381 * 179.59095 * 19 9 8 21 21 C 1.46499 * 125.28245 * 0.73176 * 20 19 9 22 22 H 1.08996 * 109.47179 * 270.04232 * 1 2 3 23 23 H 1.09007 * 109.46791 * 30.03635 * 1 2 3 24 24 H 1.08996 * 109.46912 * 150.03445 * 1 2 3 25 25 H 1.08000 * 120.14361 * 359.97438 * 6 5 3 26 26 H 1.07993 * 119.83872 * 180.02562 * 7 6 5 27 27 H 1.07995 * 119.71995 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.46999 * 25.00140 * 10 9 8 29 29 H 1.09002 * 109.47387 * 145.00322 * 10 9 8 30 30 H 0.97007 * 120.00189 * 180.02562 * 14 13 11 31 31 H 1.09002 * 109.47391 * 179.71659 * 21 20 19 32 32 H 1.09001 * 109.46813 * 59.71716 * 21 20 19 33 33 H 1.09004 * 109.47041 * 299.71843 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2444 1.1004 0.0000 4 8 1.8629 2.2550 0.0004 5 6 3.6451 0.6420 0.0006 6 6 4.8710 1.3041 0.0014 7 6 6.0415 0.5751 0.0024 8 6 6.0029 -0.8105 0.0021 9 6 4.7953 -1.4789 0.0014 10 6 4.7674 -2.9856 0.0017 11 6 4.6353 -3.4860 -1.4137 12 1 4.5778 -2.7832 -2.2317 13 6 4.5890 -4.8410 -1.6644 14 7 4.4742 -5.2775 -2.8996 15 14 4.6892 -6.0566 -0.2496 16 1 3.3211 -6.3533 0.2459 17 1 5.3284 -7.3118 -0.7198 18 1 5.4977 -5.4711 0.8498 19 6 3.6067 -0.7622 0.0069 20 7 2.2733 -1.1412 0.0005 21 6 1.7864 -2.5229 0.0002 22 1 -0.3633 0.0008 1.0276 23 1 -0.3633 0.8897 -0.5144 24 1 -0.3633 -0.8903 -0.5133 25 1 4.9044 2.3836 0.0011 26 1 6.9928 1.0862 0.0033 27 1 6.9256 -1.3718 0.0025 28 1 5.6916 -3.3661 0.4368 29 1 3.9186 -3.3332 0.5906 30 1 4.4412 -6.2308 -3.0760 31 1 0.6963 -2.5240 -0.0004 32 1 2.1497 -3.0363 0.8904 33 1 2.1508 -3.0364 -0.8896 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261358486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:27 Heat of formation + Delta-G solvation = 36.379509 kcal Electronic energy + Delta-G solvation = -17830.831266 eV Core-core repulsion = 15050.895837 eV Total energy + Delta-G solvation = -2779.935429 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.46080 -39.24252 -38.00698 -35.52863 -33.89932 -33.26024 -31.89070 -29.56783 -28.45177 -26.27554 -24.75428 -23.19736 -22.87042 -20.56086 -18.94032 -18.47087 -18.02975 -17.31069 -16.99560 -16.26697 -15.95352 -15.54238 -15.11934 -14.99169 -14.81589 -14.34353 -14.05005 -13.87014 -13.56197 -13.50529 -13.11398 -12.85350 -12.81735 -12.27338 -11.95267 -11.82540 -11.73997 -11.48531 -10.96760 -10.71659 -10.05337 -9.69338 -8.24939 -8.18215 -6.27252 0.01832 0.56449 0.66851 1.39428 1.45016 1.54660 1.75697 2.39580 2.56420 2.94437 3.11257 3.47908 3.91692 4.01389 4.14620 4.26903 4.34424 4.40168 4.42852 4.50378 4.60445 4.70187 4.87149 4.94647 5.03211 5.10245 5.22518 5.35755 5.60264 5.61474 5.81830 5.93564 6.24864 6.33297 6.42470 6.78768 7.01980 7.35380 8.93028 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024632 B = 0.008352 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.472118 B = 3351.697074 C = 4106.610241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.410 5.410 3 C 0.541 3.459 4 O -0.573 6.573 5 C -0.268 4.268 6 C -0.032 4.032 7 C -0.163 4.163 8 C -0.058 4.058 9 C -0.107 4.107 10 C 0.025 3.975 11 C -0.503 4.503 12 H 0.023 0.977 13 C 0.016 3.984 14 N -0.948 5.948 15 Si 0.937 3.063 16 H -0.258 1.258 17 H -0.292 1.292 18 H -0.244 1.244 19 C 0.199 3.801 20 N -0.415 5.415 21 C 0.106 3.894 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.141 0.859 26 H 0.162 0.838 27 H 0.144 0.856 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.265 0.735 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 5.687 9.369 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.228 5.228 3 C 0.334 3.666 4 O -0.455 6.455 5 C -0.277 4.277 6 C -0.052 4.052 7 C -0.182 4.182 8 C -0.078 4.078 9 C -0.112 4.112 10 C -0.012 4.012 11 C -0.541 4.541 12 H 0.041 0.959 13 C -0.181 4.181 14 N -0.589 5.589 15 Si 0.761 3.239 16 H -0.183 1.183 17 H -0.218 1.218 18 H -0.167 1.167 19 C 0.090 3.910 20 N -0.214 5.214 21 C -0.034 4.034 22 H 0.107 0.893 23 H 0.116 0.884 24 H 0.121 0.879 25 H 0.158 0.842 26 H 0.179 0.821 27 H 0.162 0.838 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.669 5.953 9.267 11.963 hybrid contribution -0.131 -0.906 -0.183 0.934 sum -4.800 5.047 9.083 11.446 Atomic orbital electron populations 1.22189 0.72113 1.05679 1.04702 1.47878 1.05322 0.98326 1.71228 1.17959 0.86751 0.83394 0.78457 1.90733 1.80445 1.17506 1.56789 1.20291 0.94930 0.93385 1.19067 1.20689 0.89417 1.00360 0.94705 1.21186 0.98577 0.93215 1.05271 1.21264 0.96672 0.94881 0.94986 1.19267 0.90001 0.96749 1.05151 1.18693 0.98236 0.88444 0.95852 1.21008 1.49744 0.91558 0.91819 0.95889 1.25839 0.94206 1.00215 0.97884 1.70066 1.52108 1.15087 1.21635 0.85853 0.79920 0.78019 0.80153 1.18266 1.21799 1.16742 1.18206 0.84038 0.92800 0.95945 1.46119 0.99207 0.99019 1.77026 1.22195 1.01776 0.75337 1.04096 0.89329 0.88433 0.87878 0.84159 0.82080 0.83783 0.94502 0.94682 0.92564 0.87195 0.89987 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.01 10.73 127.77 1.37 3.38 16 2 N -0.41 -13.61 3.98 -487.84 -1.94 -15.55 16 3 C 0.54 21.09 8.17 86.64 0.71 21.80 16 4 O -0.57 -24.33 17.82 -4.02 -0.07 -24.40 16 5 C -0.27 -10.32 6.35 -20.06 -0.13 -10.45 16 6 C -0.03 -1.06 10.10 22.45 0.23 -0.83 16 7 C -0.16 -4.78 10.03 22.28 0.22 -4.55 16 8 C -0.06 -1.98 9.66 22.31 0.22 -1.76 16 9 C -0.11 -4.25 5.08 -19.78 -0.10 -4.35 16 10 C 0.02 1.06 3.55 29.10 0.10 1.16 16 11 C -0.50 -26.42 8.36 25.60 0.21 -26.21 16 12 H 0.02 1.40 7.98 -2.91 -0.02 1.38 16 13 C 0.02 0.84 5.47 84.65 0.46 1.31 16 14 N -0.95 -55.84 13.96 21.45 0.30 -55.54 16 15 Si 0.94 39.63 27.47 68.60 1.88 41.51 16 16 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 19 C 0.20 7.84 6.79 38.75 0.26 8.10 16 20 N -0.41 -14.77 4.09 -360.44 -1.47 -16.24 16 21 C 0.11 3.23 9.55 127.77 1.22 4.45 16 22 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.10 2.08 8.05 -2.38 -0.02 2.06 16 24 H 0.10 1.77 6.98 -2.39 -0.02 1.75 16 25 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 26 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 27 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 28 H 0.04 1.52 7.11 -2.38 -0.02 1.50 16 29 H 0.04 1.40 4.86 -2.39 -0.01 1.39 16 30 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 31 H 0.11 2.40 6.60 -2.39 -0.02 2.38 16 32 H 0.08 2.34 6.75 -2.39 -0.02 2.32 16 33 H 0.07 2.70 6.72 -2.38 -0.02 2.68 16 Total: -1.00 -70.32 277.57 4.54 -65.78 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.07 Total: 12.40 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 4.78 Total: -7.95 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -3.12 Total: -87.33 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.07 Total: -24.40 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.88 Total: 41.51 kcal Total: -70.32 4.54 -65.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261358486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.155 kcal (2) G-P(sol) polarization free energy of solvation -70.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds