Wall clock time and date at job start Mon Mar 30 2020 04:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.48305 * 2 1 4 4 C 1.53981 * 110.32440 * 122.54523 * 2 1 3 5 5 C 1.51193 * 104.30922 * 119.06944 * 4 2 1 6 6 O 1.21291 * 125.58814 * 179.74958 * 5 4 2 7 7 N 1.34056 * 108.82270 * 359.75617 * 5 4 2 8 8 C 1.39927 * 123.46227 * 180.02562 * 7 5 4 9 9 C 1.38871 * 120.07591 * 313.23368 * 8 7 5 10 10 C 1.38109 * 119.93164 * 179.81206 * 9 8 7 11 11 C 1.38284 * 120.06583 * 0.43860 * 10 9 8 12 12 C 1.38277 * 120.14710 * 359.79061 * 11 10 9 13 13 C 1.38118 * 120.06715 * 0.02562 * 12 11 10 14 14 N 1.39336 * 113.07596 * 0.02562 * 7 5 4 15 15 C 1.36934 * 125.34056 * 180.02562 * 14 7 5 16 16 H 1.07993 * 120.00161 * 130.15705 * 15 14 7 17 17 C 1.38814 * 119.99526 * 310.43701 * 15 14 7 18 18 N 1.31621 * 120.00103 * 154.71643 * 17 15 14 19 19 Si 1.86798 * 120.00177 * 334.71077 * 17 15 14 20 20 H 1.48500 * 109.47043 * 95.55355 * 19 17 15 21 21 H 1.48501 * 109.47281 * 215.55490 * 19 17 15 22 22 H 1.48502 * 109.46999 * 335.55444 * 19 17 15 23 23 H 1.09008 * 109.46738 * 182.47595 * 1 2 3 24 24 H 1.09000 * 109.47332 * 302.47207 * 1 2 3 25 25 H 1.09000 * 109.47007 * 62.48049 * 1 2 3 26 26 H 1.09001 * 110.67633 * 0.26146 * 4 2 1 27 27 H 1.09002 * 110.36352 * 237.72472 * 4 2 1 28 28 H 1.08000 * 120.02932 * 0.02562 * 9 8 7 29 29 H 1.07998 * 119.96683 * 180.19192 * 10 9 8 30 30 H 1.08005 * 119.92329 * 179.77087 * 11 10 9 31 31 H 1.07993 * 119.96930 * 179.97438 * 12 11 10 32 32 H 1.07994 * 120.03531 * 179.97438 * 13 12 11 33 33 H 0.96992 * 120.00080 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9115 1.0211 0.0000 4 6 2.0649 -0.7768 1.2172 5 6 2.8622 -1.9117 0.6153 6 8 3.4588 -2.7637 1.2392 7 7 2.8017 -1.8218 -0.7209 8 6 3.4347 -2.7228 -1.5842 9 6 4.7573 -3.0849 -1.3645 10 6 5.3780 -3.9774 -2.2163 11 6 4.6867 -4.5034 -3.2923 12 6 3.3712 -4.1412 -3.5166 13 6 2.7436 -3.2520 -2.6663 14 7 2.0436 -0.7390 -1.1616 15 6 1.8164 -0.4121 -2.4718 16 1 0.8101 -0.2208 -2.8139 17 6 2.8789 -0.3323 -3.3615 18 7 2.6747 -0.5161 -4.6487 19 14 4.5986 0.0361 -2.7319 20 1 5.3366 -1.2373 -2.5340 21 1 5.3187 0.8768 -3.7219 22 1 4.5077 0.7616 -1.4394 23 1 -0.3633 -1.0268 0.0444 24 1 -0.3634 0.5517 0.8670 25 1 -0.3633 0.4748 -0.9114 26 1 1.2423 -1.1654 1.8175 27 1 2.7083 -0.1378 1.8221 28 1 5.2987 -2.6716 -0.5264 29 1 6.4055 -4.2618 -2.0441 30 1 5.1755 -5.1983 -3.9590 31 1 2.8342 -4.5534 -4.3580 32 1 1.7163 -2.9692 -2.8422 33 1 3.4172 -0.4607 -5.2703 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261359928.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:48 Heat of formation + Delta-G solvation = 42.397823 kcal Electronic energy + Delta-G solvation = -18612.055950 eV Core-core repulsion = 15832.381495 eV Total energy + Delta-G solvation = -2779.674455 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.86640 -39.54427 -38.12312 -34.92597 -34.65399 -31.88651 -31.42394 -30.88690 -28.10815 -25.78816 -23.86833 -23.47325 -21.88707 -21.25674 -19.87688 -18.11308 -17.35249 -17.05159 -16.73748 -16.24350 -15.77900 -15.41610 -15.15891 -14.87634 -14.60648 -14.30156 -14.19861 -13.96213 -13.57424 -13.35242 -12.82875 -12.71965 -12.27952 -12.27167 -12.10483 -12.08634 -11.99811 -11.40421 -10.86746 -10.74795 -9.67134 -9.52479 -8.48821 -8.12287 -5.94410 0.28224 0.51788 1.29260 1.38578 1.43774 1.51080 1.64936 2.34659 2.87808 2.98059 3.46211 3.76421 3.82827 4.00595 4.08716 4.19165 4.27856 4.54650 4.57148 4.62329 4.69139 4.78787 4.87204 5.08096 5.13438 5.26193 5.42224 5.49384 5.51581 5.60228 5.68161 5.82996 6.09615 6.23494 6.91596 7.07860 7.47859 8.14418 8.68365 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.019814 B = 0.013880 C = 0.010573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.773909 B = 2016.750322 C = 2647.544399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.162 3.838 3 H 0.077 0.923 4 C -0.146 4.146 5 C 0.481 3.519 6 O -0.583 6.583 7 N -0.372 5.372 8 C 0.127 3.873 9 C -0.133 4.133 10 C -0.121 4.121 11 C -0.127 4.127 12 C -0.116 4.116 13 C -0.100 4.100 14 N -0.431 5.431 15 C -0.266 4.266 16 H 0.067 0.933 17 C 0.061 3.939 18 N -0.875 5.875 19 Si 0.884 3.116 20 H -0.245 1.245 21 H -0.300 1.300 22 H -0.277 1.277 23 H 0.042 0.958 24 H 0.095 0.905 25 H 0.050 0.950 26 H 0.131 0.869 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.150 0.850 30 H 0.158 0.842 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.578 -2.073 5.289 5.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.058 3.942 3 H 0.095 0.905 4 C -0.185 4.185 5 C 0.270 3.730 6 O -0.465 6.465 7 N -0.174 5.174 8 C 0.035 3.965 9 C -0.154 4.154 10 C -0.139 4.139 11 C -0.145 4.145 12 C -0.134 4.134 13 C -0.121 4.121 14 N -0.245 5.245 15 C -0.397 4.397 16 H 0.084 0.916 17 C -0.148 4.148 18 N -0.511 5.511 19 Si 0.710 3.290 20 H -0.169 1.169 21 H -0.228 1.228 22 H -0.202 1.202 23 H 0.062 0.938 24 H 0.113 0.887 25 H 0.069 0.931 26 H 0.149 0.851 27 H 0.143 0.857 28 H 0.122 0.878 29 H 0.168 0.832 30 H 0.176 0.824 31 H 0.158 0.842 32 H 0.125 0.875 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.919 -2.515 5.388 6.017 hybrid contribution 0.722 0.396 -0.236 0.857 sum 1.641 -2.119 5.152 5.807 Atomic orbital electron populations 1.22098 0.93882 1.01544 1.02764 1.21483 0.95272 0.94782 0.82697 0.90511 1.22597 1.01637 0.95520 0.98766 1.20944 0.82850 0.87869 0.81361 1.90640 1.48973 1.41616 1.65233 1.46192 1.44436 1.21619 1.05155 1.17770 0.91974 0.92538 0.94227 1.20976 0.92619 1.00977 1.00808 1.21212 1.00859 0.97003 0.94833 1.21430 0.94242 1.00903 0.97936 1.21258 0.95960 0.97265 0.98957 1.21044 1.00044 0.95900 0.95076 1.44552 1.60551 1.16270 1.03175 1.18162 0.92904 1.46045 0.82576 0.91576 1.26026 1.00262 0.93845 0.94645 1.69959 1.33886 1.43928 1.03369 0.86658 0.84193 0.80152 0.77991 1.16883 1.22771 1.20193 0.93842 0.88658 0.93065 0.85067 0.85727 0.87831 0.83194 0.82417 0.84183 0.87471 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.13 71.98 0.66 -3.57 16 2 C 0.16 5.70 4.03 45.24 0.18 5.88 16 3 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 4 C -0.15 -4.63 6.60 30.34 0.20 -4.43 16 5 C 0.48 20.78 7.90 87.93 0.70 21.47 16 6 O -0.58 -27.81 16.74 -3.06 -0.05 -27.86 16 7 N -0.37 -17.27 2.95 -303.90 -0.90 -18.17 16 8 C 0.13 5.93 3.29 38.15 0.13 6.06 16 9 C -0.13 -5.76 6.54 22.39 0.15 -5.62 16 10 C -0.12 -4.30 9.99 22.25 0.22 -4.08 16 11 C -0.13 -4.19 10.04 22.29 0.22 -3.97 16 12 C -0.12 -4.38 10.04 22.25 0.22 -4.16 16 13 C -0.10 -4.54 7.91 22.39 0.18 -4.36 16 14 N -0.43 -19.69 2.77 -320.49 -0.89 -20.58 16 15 C -0.27 -13.69 8.30 84.03 0.70 -12.99 16 16 H 0.07 3.66 7.86 -2.91 -0.02 3.64 16 17 C 0.06 3.21 3.84 84.86 0.33 3.54 16 18 N -0.88 -47.81 13.97 21.65 0.30 -47.51 16 19 Si 0.88 43.38 25.80 68.60 1.77 45.15 16 20 H -0.24 -11.78 4.66 99.48 0.46 -11.31 16 21 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 22 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 23 H 0.04 1.33 8.14 -2.38 -0.02 1.32 16 24 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 1.66 7.81 -2.39 -0.02 1.64 16 26 H 0.13 3.39 7.73 -2.39 -0.02 3.37 16 27 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 28 H 0.10 4.61 7.58 -2.91 -0.02 4.59 16 29 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 30 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 31 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 32 H 0.11 5.32 7.22 -2.91 -0.02 5.30 16 33 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -64.85 271.98 4.97 -59.88 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.86 Total: 15.31 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 3.88 Total: -6.23 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -1.48 Total: -86.25 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.05 Total: -27.86 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.77 Total: 45.15 kcal Total: -64.85 4.97 -59.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261359928.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.278 kcal (2) G-P(sol) polarization free energy of solvation -64.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds