Wall clock time and date at job start Mon Mar 30 2020 04:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42901 * 109.46653 * 281.78545 * 3 2 1 5 5 C 1.42899 * 113.99649 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47405 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.46840 * 64.99638 * 6 5 4 8 8 C 1.39250 * 119.99914 * 180.02562 * 7 6 5 9 9 C 1.39711 * 120.78162 * 359.72454 * 8 7 6 10 10 C 1.38457 * 119.46643 * 179.77445 * 9 8 7 11 11 N 1.31528 * 121.11182 * 0.51249 * 10 9 8 12 12 C 1.33695 * 121.69846 * 359.73685 * 11 10 9 13 13 C 1.41453 * 119.79953 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00211 * 179.97438 * 13 12 11 15 15 C 1.40008 * 119.99623 * 359.97438 * 13 12 11 16 16 N 1.30754 * 120.00291 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 120.00071 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46974 * 90.00294 * 17 15 13 19 19 H 1.48492 * 109.47216 * 210.00442 * 17 15 13 20 20 H 1.48498 * 109.46752 * 330.00557 * 17 15 13 21 21 C 1.39026 * 120.78139 * 180.02562 * 8 7 6 22 22 H 4.38440 * 5.44458 * 179.97438 * 4 1 2 23 23 H 1.08990 * 109.46788 * 161.78620 * 3 2 1 24 24 H 1.08992 * 109.46887 * 41.78050 * 3 2 1 25 25 H 1.09002 * 109.47445 * 59.99875 * 5 4 3 26 26 H 1.09002 * 109.47167 * 299.99793 * 5 4 3 27 27 H 1.09002 * 109.47398 * 184.99964 * 6 5 4 28 28 H 1.09001 * 109.47194 * 305.00145 * 6 5 4 29 29 H 0.97000 * 120.00420 * 0.02562 * 7 6 5 30 30 H 1.07999 * 120.26370 * 359.97438 * 9 8 7 31 31 H 1.07998 * 119.43912 * 180.25249 * 10 9 8 32 32 H 0.96997 * 120.00027 * 179.97438 * 16 15 13 33 33 H 1.07992 * 120.56139 * 0.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1224 -0.2743 1.3189 5 6 4.5469 -0.2962 1.4295 6 6 4.9416 -0.5973 2.8767 7 7 4.5046 -1.9501 3.2306 8 6 4.7535 -2.4509 4.5058 9 6 5.4238 -1.6797 5.4586 10 6 5.6527 -2.2030 6.7199 11 7 5.2586 -3.4181 7.0333 12 6 4.6182 -4.1972 6.1557 13 6 4.2118 -5.4977 6.5359 14 1 3.6939 -6.1296 5.8297 15 6 4.4811 -5.9655 7.8277 16 7 5.1078 -5.2002 8.6829 17 14 3.9452 -7.6832 8.3296 18 1 5.0296 -8.6498 8.0218 19 1 3.6600 -7.7068 9.7867 20 1 2.7199 -8.0584 7.5792 21 6 4.3464 -3.7325 4.8589 22 1 -1.0499 0.0002 0.0001 23 1 3.0089 0.9769 -0.3212 24 1 3.0097 -0.7655 -0.6847 25 1 4.9490 0.6742 1.1381 26 1 4.9504 -1.0682 0.7743 27 1 6.0244 -0.5265 2.9804 28 1 4.4651 0.1238 3.5409 29 1 4.0417 -2.4969 2.5767 30 1 5.7577 -0.6821 5.2143 31 1 6.1673 -1.6049 7.4574 32 1 5.2940 -5.5243 9.5779 33 1 3.8303 -4.3602 4.1476 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309533918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:39 Heat of formation + Delta-G solvation = 46.773529 kcal Electronic energy + Delta-G solvation = -16370.837011 eV Core-core repulsion = 13591.352300 eV Total energy + Delta-G solvation = -2779.484711 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.62481 -37.96107 -35.35446 -33.50353 -33.10658 -30.51951 -29.73613 -27.64951 -26.58122 -25.51716 -22.64448 -21.39887 -20.36291 -18.65810 -17.57665 -16.93785 -16.31555 -15.65628 -15.50032 -14.70188 -14.62958 -14.02304 -13.79747 -13.31306 -13.06075 -12.54502 -12.37677 -12.11789 -11.91558 -11.51475 -11.12312 -11.04813 -10.72164 -10.68256 -10.55830 -10.32344 -9.78782 -9.68939 -9.65187 -9.04722 -7.49685 -7.39006 -6.58846 -6.25840 -4.40569 2.30958 2.60011 2.89558 3.15536 3.18938 3.26069 3.43942 3.72648 4.03043 4.17408 4.33283 4.88763 4.90426 5.06081 5.07779 5.18258 5.27237 5.69439 5.80425 5.98847 6.13549 6.21824 6.53656 6.78132 6.94145 7.01384 7.19490 7.28855 7.36507 7.59412 7.71235 7.78031 8.35464 8.48709 8.58176 8.87217 9.11961 10.32188 10.48112 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029774 B = 0.004226 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.185877 B = 6623.448904 C = 7311.829236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.193 4.193 3 C 0.171 3.829 4 O -0.375 6.375 5 C 0.052 3.948 6 C 0.138 3.862 7 N -0.751 5.751 8 C 0.255 3.745 9 C -0.372 4.372 10 C 0.149 3.851 11 N -0.507 5.507 12 C 0.283 3.717 13 C -0.437 4.437 14 H 0.080 0.920 15 C 0.071 3.929 16 N -0.717 5.717 17 Si 0.905 3.095 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.263 1.263 21 C -0.345 4.345 22 H 0.222 0.778 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.392 0.608 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.270 0.730 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 8.109 -13.403 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C 0.096 3.904 4 O -0.295 6.295 5 C -0.025 4.025 6 C 0.013 3.987 7 N -0.385 5.385 8 C 0.150 3.850 9 C -0.400 4.400 10 C -0.018 4.018 11 N -0.222 5.222 12 C 0.159 3.841 13 C -0.468 4.468 14 H 0.098 0.902 15 C -0.154 4.154 16 N -0.339 5.339 17 Si 0.729 3.271 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.372 4.372 22 H 0.238 0.762 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.225 0.775 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.081 0.919 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.194 7.894 -12.179 14.678 hybrid contribution -0.593 -0.438 -1.163 1.377 sum -2.787 7.455 -13.343 15.536 Atomic orbital electron populations 1.24980 0.95922 1.00639 0.97712 1.22563 0.93974 1.00741 1.02055 1.19061 0.84820 1.00599 0.85957 1.88077 1.21492 1.92511 1.27386 1.22858 0.80763 1.00673 0.98170 1.21121 0.98753 0.86257 0.92618 1.44244 1.66766 1.14845 1.12624 1.17658 0.91631 0.92191 0.83548 1.20834 1.20269 1.01546 0.97378 1.22283 0.94000 0.92985 0.92538 1.68754 1.15928 1.03592 1.33908 1.18331 0.87031 0.92479 0.86307 1.19570 1.32078 0.97922 0.97214 0.90170 1.26056 0.93955 0.98775 0.96569 1.70167 1.25032 1.34524 1.04150 0.86387 0.79938 0.82483 0.78298 1.19512 1.20202 1.18654 1.21156 1.19451 0.96430 1.00171 0.76172 0.90974 0.90908 0.91887 0.92471 0.91304 0.92105 0.77454 0.89111 0.86682 0.91858 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 19.25 29.55 0.57 -1.25 16 2 C -0.19 -2.28 13.73 -37.12 -0.51 -2.79 16 3 C 0.17 1.74 6.41 34.37 0.22 1.96 16 4 O -0.38 -4.99 10.25 -35.23 -0.36 -5.35 16 5 C 0.05 0.57 6.07 37.16 0.23 0.80 16 6 C 0.14 2.01 5.33 -4.04 -0.02 1.99 16 7 N -0.75 -13.93 5.67 -58.50 -0.33 -14.26 16 8 C 0.26 5.96 6.69 -83.65 -0.56 5.40 16 9 C -0.37 -8.70 9.40 -38.95 -0.37 -9.07 16 10 C 0.15 3.79 11.17 -17.60 -0.20 3.59 16 11 N -0.51 -14.68 7.86 -11.21 -0.09 -14.76 16 12 C 0.28 8.15 6.55 -85.01 -0.56 7.59 16 13 C -0.44 -12.27 9.14 -37.70 -0.34 -12.62 16 14 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 15 C 0.07 1.89 5.50 -17.35 -0.10 1.80 16 16 N -0.72 -19.88 11.46 55.55 0.64 -19.24 16 17 Si 0.90 19.27 29.56 -169.99 -5.02 14.25 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 21 C -0.35 -8.98 9.72 -38.47 -0.37 -9.35 16 22 H 0.22 1.44 7.80 -54.09 -0.42 1.01 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.95 7.98 -51.93 -0.41 0.53 16 28 H 0.06 0.95 8.00 -51.93 -0.42 0.54 16 29 H 0.39 6.86 8.50 -40.82 -0.35 6.51 16 30 H 0.09 1.86 6.87 -52.49 -0.36 1.50 16 31 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 32 H 0.27 6.77 8.29 -40.82 -0.34 6.43 16 33 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 299.04 15.07 4.51 4.51 Total: -1.00 -32.95 299.04 -6.71 -39.66 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.04 Total: 7.15 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -2.01 Total: -11.95 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.22 Total: -48.27 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.36 Total: -5.35 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.95 -6.71 -39.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309533918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.437 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds