Wall clock time and date at job start Mon Mar 30 2020 04:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81399 * 109.46832 * 2 1 4 4 O 1.42107 * 109.46941 * 70.94877 * 3 2 1 5 5 N 1.65602 * 102.99856 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99873 * 180.02562 * 5 3 2 7 7 C 1.53065 * 109.45413 * 94.79597 * 6 5 3 8 8 C 1.53192 * 109.29648 * 181.24177 * 7 6 5 9 9 N 1.46922 * 108.89269 * 305.57538 * 8 7 6 10 10 C 1.36942 * 120.62796 * 233.51528 * 9 8 7 11 11 H 1.08007 * 119.99636 * 151.83092 * 10 9 8 12 12 C 1.38806 * 120.00203 * 331.83144 * 10 9 8 13 13 N 1.31624 * 120.00191 * 343.08250 * 12 10 9 14 14 Si 1.86800 * 120.00146 * 163.07925 * 12 10 9 15 15 H 1.48503 * 109.47195 * 89.99708 * 14 12 10 16 16 H 1.48498 * 109.47355 * 210.00264 * 14 12 10 17 17 H 1.48504 * 109.46850 * 330.00278 * 14 12 10 18 18 C 1.46924 * 118.73925 * 53.53382 * 9 8 7 19 19 C 1.53049 * 109.45577 * 215.00277 * 6 5 3 20 20 H 1.08993 * 109.47078 * 299.99665 * 1 2 3 21 21 H 1.08998 * 109.47224 * 59.99958 * 1 2 3 22 22 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46857 * 240.00577 * 2 1 3 24 24 H 1.08990 * 109.47304 * 120.00351 * 2 1 3 25 25 H 0.97002 * 120.00067 * 0.02562 * 5 3 2 26 26 H 1.08992 * 109.46107 * 334.97162 * 6 5 3 27 27 H 1.09005 * 109.39523 * 61.36241 * 7 6 5 28 28 H 1.09004 * 109.62174 * 301.25928 * 7 6 5 29 29 H 1.09003 * 109.58615 * 185.71531 * 8 7 6 30 30 H 1.08998 * 109.58372 * 65.43477 * 8 7 6 31 31 H 0.96995 * 120.00379 * 180.02562 * 13 12 10 32 32 H 1.09007 * 109.58325 * 66.18371 * 18 9 8 33 33 H 1.08996 * 109.58499 * 186.46256 * 18 9 8 34 34 H 1.09002 * 109.49883 * 58.66699 * 19 6 5 35 35 H 1.08993 * 109.49715 * 298.56552 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8802 2.3026 1.2664 5 7 3.7801 1.5237 0.0007 6 6 4.6509 2.7018 0.0015 7 6 5.0502 3.0396 1.4400 8 6 5.9352 4.2901 1.4393 9 7 7.0691 4.0699 0.5313 10 6 8.3555 4.2486 0.9655 11 1 9.1607 3.6883 0.5136 12 6 8.6246 5.1499 1.9864 13 7 7.7334 6.0627 2.3103 14 14 10.2515 5.0672 2.9006 15 1 11.2490 5.9273 2.2148 16 1 10.0611 5.5441 4.2939 17 1 10.7377 3.6641 2.9197 18 6 6.7966 3.6548 -0.8515 19 6 5.9049 2.4094 -0.8258 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 4.1674 0.6343 0.0006 26 1 4.1181 3.5474 -0.4333 27 1 5.6027 2.2032 1.8682 28 1 4.1556 3.2274 2.0338 29 1 6.3052 4.4764 2.4475 30 1 5.3554 5.1478 1.0986 31 1 7.9215 6.6927 3.0234 32 1 6.2856 4.4593 -1.3805 33 1 7.7351 3.4244 -1.3555 34 1 5.6163 2.1476 -1.8438 35 1 6.4513 1.5799 -0.3773 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385717351.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:24 Heat of formation + Delta-G solvation = -25.610921 kcal Electronic energy + Delta-G solvation = -16416.087091 eV Core-core repulsion = 13768.907506 eV Total energy + Delta-G solvation = -2647.179585 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -37.76508 -35.35087 -34.25771 -32.83014 -31.67408 -29.85058 -28.90491 -24.82850 -23.59319 -22.06349 -21.56041 -19.36039 -17.92662 -16.88106 -16.17510 -15.35097 -15.01174 -14.69878 -14.20446 -13.69277 -13.41836 -13.31927 -12.94055 -12.80814 -12.34610 -12.26886 -12.11592 -11.42687 -11.35223 -11.08642 -10.87714 -10.67556 -10.42290 -10.28841 -10.16684 -10.04965 -9.72143 -9.38825 -8.87080 -8.40963 -7.80244 -6.62421 -5.74360 -3.17093 1.96017 2.75782 3.39946 3.46952 3.49300 4.18458 4.53186 4.84363 4.90595 5.21623 5.31537 5.42826 5.57232 5.62722 5.72502 5.76620 5.82508 5.89474 5.96248 6.20972 6.34626 6.56709 6.66230 6.73895 6.91586 7.00104 7.01746 7.42117 7.59587 7.73831 7.83555 8.50014 9.25613 9.89515 10.46072 11.34059 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.052257 B = 0.005103 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.680148 B = 5486.004198 C = 5698.716355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.494 4.494 3 S 1.486 4.514 4 O -0.895 6.895 5 N -1.020 6.020 6 C 0.177 3.823 7 C -0.156 4.156 8 C 0.172 3.828 9 N -0.593 5.593 10 C -0.254 4.254 11 H 0.065 0.935 12 C 0.002 3.998 13 N -0.902 5.902 14 Si 0.901 3.099 15 H -0.287 1.287 16 H -0.290 1.290 17 H -0.280 1.280 18 C 0.146 3.854 19 C -0.133 4.133 20 H 0.056 0.944 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.109 0.891 24 H 0.079 0.921 25 H 0.387 0.613 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.018 0.982 31 H 0.254 0.746 32 H 0.019 0.981 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.955 -10.339 -9.904 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.628 4.628 3 S 1.586 4.414 4 O -0.878 6.878 5 N -0.771 5.771 6 C 0.070 3.930 7 C -0.197 4.197 8 C 0.046 3.954 9 N -0.316 5.316 10 C -0.384 4.384 11 H 0.082 0.918 12 C -0.196 4.196 13 N -0.546 5.546 14 Si 0.731 3.269 15 H -0.214 1.214 16 H -0.216 1.216 17 H -0.206 1.206 18 C 0.019 3.981 19 C -0.175 4.175 20 H 0.075 0.925 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.127 0.873 24 H 0.098 0.902 25 H 0.215 0.785 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.509 -9.150 -9.674 18.270 hybrid contribution 1.611 -1.705 2.382 3.343 sum -10.898 -10.856 -7.292 17.023 Atomic orbital electron populations 1.21261 0.92391 1.02662 1.02364 1.28111 1.03890 1.24054 1.06760 1.70284 0.79144 0.84589 1.07374 1.93025 1.80205 1.67351 1.47257 1.53123 1.20069 1.11842 1.92107 1.20568 0.90248 0.85751 0.96477 1.22731 1.00040 1.01220 0.95745 1.20760 0.86738 0.90900 0.97017 1.44094 1.02872 1.79471 1.05171 1.19164 0.84652 1.17176 1.17363 0.91761 1.25048 0.97611 0.95423 1.01540 1.70033 1.35283 1.17617 1.31667 0.86322 0.83578 0.77685 0.79320 1.21370 1.21590 1.20559 1.20888 0.96529 0.92708 0.87989 1.22322 0.96127 1.00748 0.98270 0.92455 0.91470 0.92177 0.87254 0.90174 0.78524 0.91363 0.93096 0.92386 0.89563 0.96365 0.93637 0.96274 0.92558 0.92433 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.92 37.16 0.37 -0.70 16 2 C -0.49 -4.62 6.70 37.16 0.25 -4.37 16 3 S 1.49 17.19 13.88 -107.50 -1.49 15.69 16 4 O -0.89 -17.03 17.38 -35.23 -0.61 -17.64 16 5 N -1.02 -13.85 5.38 -4.84 -0.03 -13.88 16 6 C 0.18 3.03 2.78 -67.87 -0.19 2.84 16 7 C -0.16 -3.37 5.70 -26.60 -0.15 -3.52 16 8 C 0.17 4.36 5.30 -3.71 -0.02 4.34 16 9 N -0.59 -15.17 3.00 -172.32 -0.52 -15.69 16 10 C -0.25 -7.11 9.58 -15.06 -0.14 -7.25 16 11 H 0.06 1.75 7.89 -52.48 -0.41 1.34 16 12 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 13 N -0.90 -26.91 11.20 55.49 0.62 -26.29 16 14 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C 0.15 3.01 6.52 -3.71 -0.02 2.98 16 19 C -0.13 -2.22 5.61 -26.61 -0.15 -2.36 16 20 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.39 4.69 8.64 -34.47 -0.30 4.39 16 26 H 0.07 1.14 7.99 -51.93 -0.41 0.72 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 1.32 7.52 -51.93 -0.39 0.93 16 29 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 294.52 15.07 4.44 4.44 Total: -1.00 -35.82 294.52 -8.37 -44.19 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.61 Total: 0.13 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.15 Total: -8.06 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.08 Total: -55.85 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.61 Total: -17.64 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Atomic # 16 Polarization: 17.19 SS G_CDS: -1.49 Total: 15.69 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.82 -8.37 -44.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385717351.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.581 kcal (2) G-P(sol) polarization free energy of solvation -35.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds