Wall clock time and date at job start Mon Mar 30 2020 04:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81399 * 109.46832 * 2 1 4 4 O 1.42107 * 109.46941 * 70.94877 * 3 2 1 5 5 N 1.65602 * 102.99856 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99873 * 180.02562 * 5 3 2 7 7 C 1.53065 * 109.45413 * 94.79597 * 6 5 3 8 8 C 1.53192 * 109.29648 * 181.24177 * 7 6 5 9 9 N 1.46922 * 108.89269 * 305.57538 * 8 7 6 10 10 C 1.36942 * 120.62796 * 233.51528 * 9 8 7 11 11 H 1.08007 * 119.99636 * 151.83092 * 10 9 8 12 12 C 1.38806 * 120.00203 * 331.83144 * 10 9 8 13 13 N 1.31624 * 120.00191 * 343.08250 * 12 10 9 14 14 Si 1.86800 * 120.00146 * 163.07925 * 12 10 9 15 15 H 1.48503 * 109.47195 * 89.99708 * 14 12 10 16 16 H 1.48498 * 109.47355 * 210.00264 * 14 12 10 17 17 H 1.48504 * 109.46850 * 330.00278 * 14 12 10 18 18 C 1.46924 * 118.73925 * 53.53382 * 9 8 7 19 19 C 1.53049 * 109.45577 * 215.00277 * 6 5 3 20 20 H 1.08993 * 109.47078 * 299.99665 * 1 2 3 21 21 H 1.08998 * 109.47224 * 59.99958 * 1 2 3 22 22 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46857 * 240.00577 * 2 1 3 24 24 H 1.08990 * 109.47304 * 120.00351 * 2 1 3 25 25 H 0.97002 * 120.00067 * 0.02562 * 5 3 2 26 26 H 1.08992 * 109.46107 * 334.97162 * 6 5 3 27 27 H 1.09005 * 109.39523 * 61.36241 * 7 6 5 28 28 H 1.09004 * 109.62174 * 301.25928 * 7 6 5 29 29 H 1.09003 * 109.58615 * 185.71531 * 8 7 6 30 30 H 1.08998 * 109.58372 * 65.43477 * 8 7 6 31 31 H 0.96995 * 120.00379 * 180.02562 * 13 12 10 32 32 H 1.09007 * 109.58325 * 66.18371 * 18 9 8 33 33 H 1.08996 * 109.58499 * 186.46256 * 18 9 8 34 34 H 1.09002 * 109.49883 * 58.66699 * 19 6 5 35 35 H 1.08993 * 109.49715 * 298.56552 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8802 2.3026 1.2664 5 7 3.7801 1.5237 0.0007 6 6 4.6509 2.7018 0.0015 7 6 5.0502 3.0396 1.4400 8 6 5.9352 4.2901 1.4393 9 7 7.0691 4.0699 0.5313 10 6 8.3555 4.2486 0.9655 11 1 9.1607 3.6883 0.5136 12 6 8.6246 5.1499 1.9864 13 7 7.7334 6.0627 2.3103 14 14 10.2515 5.0672 2.9006 15 1 11.2490 5.9273 2.2148 16 1 10.0611 5.5441 4.2939 17 1 10.7377 3.6641 2.9197 18 6 6.7966 3.6548 -0.8515 19 6 5.9049 2.4094 -0.8258 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 4.1674 0.6343 0.0006 26 1 4.1181 3.5474 -0.4333 27 1 5.6027 2.2032 1.8682 28 1 4.1556 3.2274 2.0338 29 1 6.3052 4.4764 2.4475 30 1 5.3554 5.1478 1.0986 31 1 7.9215 6.6927 3.0234 32 1 6.2856 4.4593 -1.3805 33 1 7.7351 3.4244 -1.3555 34 1 5.6163 2.1476 -1.8438 35 1 6.4513 1.5799 -0.3773 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385717351.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:23 Heat of formation + Delta-G solvation = -52.746186 kcal Electronic energy + Delta-G solvation = -16417.263764 eV Core-core repulsion = 13768.907506 eV Total energy + Delta-G solvation = -2648.356258 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.114 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42291 -36.62951 -35.95021 -33.55651 -33.52037 -31.61483 -30.58991 -26.70476 -24.53815 -23.78444 -23.18281 -21.00034 -19.14550 -18.70005 -17.36004 -16.94958 -16.43828 -15.84852 -15.59203 -15.33492 -15.08688 -14.72829 -14.68385 -14.17603 -13.76719 -13.37715 -13.13486 -13.04997 -12.87450 -12.65471 -12.54005 -12.17032 -12.09002 -12.04905 -11.81290 -11.73739 -11.46495 -10.94509 -10.59184 -10.12320 -8.92582 -8.67943 -7.88287 -5.33975 0.98674 1.44000 1.46301 1.55558 1.78071 2.50066 3.19819 3.26999 3.69517 3.94457 4.09228 4.16561 4.22317 4.37635 4.48427 4.52985 4.62549 4.71057 4.86805 4.98324 5.03839 5.07707 5.20276 5.24855 5.25175 5.36935 5.47386 5.51353 5.63622 5.71324 6.38075 6.48130 7.13067 7.85871 8.37580 9.18285 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.052257 B = 0.005103 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.680148 B = 5486.004198 C = 5698.716355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.480 4.480 3 S 1.530 4.470 4 O -0.971 6.971 5 N -1.013 6.013 6 C 0.184 3.816 7 C -0.143 4.143 8 C 0.182 3.818 9 N -0.612 5.612 10 C -0.263 4.263 11 H 0.071 0.929 12 C -0.055 4.055 13 N -0.938 5.938 14 Si 0.967 3.033 15 H -0.279 1.279 16 H -0.297 1.297 17 H -0.270 1.270 18 C 0.137 3.863 19 C -0.117 4.117 20 H 0.033 0.967 21 H 0.098 0.902 22 H 0.074 0.926 23 H 0.149 0.851 24 H 0.060 0.940 25 H 0.397 0.603 26 H 0.078 0.922 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.044 0.956 30 H -0.002 1.002 31 H 0.248 0.752 32 H 0.025 0.975 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.226 -12.561 -12.268 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.617 4.617 3 S 1.634 4.366 4 O -0.956 6.956 5 N -0.763 5.763 6 C 0.075 3.925 7 C -0.185 4.185 8 C 0.055 3.945 9 N -0.336 5.336 10 C -0.393 4.393 11 H 0.089 0.911 12 C -0.250 4.250 13 N -0.584 5.584 14 Si 0.795 3.205 15 H -0.206 1.206 16 H -0.223 1.223 17 H -0.195 1.195 18 C 0.011 3.989 19 C -0.158 4.158 20 H 0.052 0.948 21 H 0.117 0.883 22 H 0.093 0.907 23 H 0.167 0.833 24 H 0.079 0.921 25 H 0.227 0.773 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.765 -11.391 -12.074 20.940 hybrid contribution 1.614 -1.117 3.049 3.626 sum -11.152 -12.508 -9.025 19.033 Atomic orbital electron populations 1.21396 0.91405 1.03816 1.02900 1.27972 1.04722 1.21293 1.07763 1.69505 0.77117 0.85338 1.04678 1.92926 1.81268 1.71055 1.50309 1.52883 1.20433 1.11361 1.91629 1.20330 0.91523 0.87461 0.93190 1.22547 0.98046 0.98760 0.99106 1.20452 0.87118 0.92019 0.94903 1.44341 1.02046 1.79775 1.07397 1.19564 0.85891 1.16535 1.17337 0.91110 1.25851 1.01025 0.95411 1.02694 1.70198 1.37357 1.18622 1.32219 0.85287 0.79778 0.78000 0.77462 1.20579 1.22317 1.19525 1.21157 0.97970 0.94522 0.85201 1.22149 0.94573 0.98224 1.00853 0.94776 0.88277 0.90730 0.83333 0.92117 0.77325 0.90423 0.94314 0.94335 0.93734 0.98388 0.94253 0.95697 0.91885 0.87489 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.92 71.98 0.71 -1.16 16 2 C -0.48 -7.41 6.70 71.98 0.48 -6.93 16 3 S 1.53 32.40 13.88 -56.49 -0.78 31.61 16 4 O -0.97 -37.16 17.38 -148.98 -2.59 -39.75 16 5 N -1.01 -24.91 5.38 -169.24 -0.91 -25.82 16 6 C 0.18 5.97 2.78 45.03 0.13 6.10 16 7 C -0.14 -6.30 5.70 30.68 0.17 -6.12 16 8 C 0.18 9.57 5.30 86.36 0.46 10.02 16 9 N -0.61 -31.53 3.00 -699.10 -2.09 -33.63 16 10 C -0.26 -14.83 9.58 84.03 0.81 -14.02 16 11 H 0.07 3.82 7.89 -2.91 -0.02 3.79 16 12 C -0.05 -3.17 4.92 84.86 0.42 -2.75 16 13 N -0.94 -58.03 11.20 21.65 0.24 -57.79 16 14 Si 0.97 46.25 29.59 68.60 2.03 48.28 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 C 0.14 5.40 6.52 86.36 0.56 5.97 16 19 C -0.12 -3.52 5.61 30.67 0.17 -3.35 16 20 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 21 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 23 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 1.24 8.14 -2.40 -0.02 1.22 16 25 H 0.40 8.25 8.64 -96.74 -0.84 7.42 16 26 H 0.08 2.44 7.99 -2.39 -0.02 2.42 16 27 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.04 1.82 7.52 -2.38 -0.02 1.80 16 29 H 0.04 2.68 6.06 -2.39 -0.01 2.67 16 30 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.03 0.96 8.14 -2.38 -0.02 0.95 16 33 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -81.27 294.52 0.03 -81.24 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.23 Total: 8.10 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 3.91 Total: -12.24 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -2.76 Total: -117.23 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -2.59 Total: -39.75 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 16 Polarization: 32.40 SS G_CDS: -0.78 Total: 31.61 kcal Total: -81.27 0.03 -81.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385717351.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.491 kcal (2) G-P(sol) polarization free energy of solvation -81.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds