Wall clock time and date at job start Mon Mar 30 2020 04:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35912 * 117.00151 * 180.02562 * 3 2 1 5 5 C 1.38860 * 119.97857 * 359.97438 * 4 3 2 6 6 C 1.38246 * 120.24812 * 180.02562 * 5 4 3 7 7 C 1.37994 * 120.21104 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.01880 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47346 * 145.00096 * 8 7 6 10 10 N 1.46895 * 109.47378 * 24.99545 * 8 7 6 11 11 C 1.50702 * 109.46918 * 264.99988 * 8 7 6 12 12 H 1.08011 * 119.99925 * 0.02562 * 11 8 7 13 13 C 1.37872 * 120.00309 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00366 * 180.02562 * 13 11 8 15 15 Si 1.86801 * 119.99823 * 0.02562 * 13 11 8 16 16 H 1.48499 * 109.47372 * 90.00088 * 15 13 11 17 17 H 1.48505 * 109.47304 * 209.99788 * 15 13 11 18 18 H 1.48498 * 109.47201 * 329.99521 * 15 13 11 19 19 C 1.39626 * 119.96327 * 0.02562 * 7 6 5 20 20 C 1.43192 * 120.12590 * 179.97438 * 19 7 6 21 21 N 7.14252 * 131.48669 * 359.97438 * 2 1 3 22 22 C 1.38434 * 119.98203 * 179.72595 * 4 3 2 23 23 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 28 28 H 1.08001 * 119.87422 * 0.02562 * 5 4 3 29 29 H 1.08001 * 119.89468 * 180.02562 * 6 5 4 30 30 H 1.00896 * 111.00313 * 300.00723 * 10 8 7 31 31 H 1.00907 * 110.99871 * 63.95774 * 10 8 7 32 32 H 0.96997 * 120.00124 * 180.02562 * 14 13 11 33 33 H 1.08010 * 120.10679 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3538 1.5253 -0.0005 5 6 4.1992 0.4238 -0.0005 6 6 5.5706 0.5984 -0.0005 7 6 6.1087 1.8691 -0.0011 8 6 7.6043 2.0545 -0.0017 9 1 7.8612 2.9345 -0.5915 10 7 8.2445 0.8689 -0.5868 11 6 8.0881 2.2396 1.4135 12 1 7.3830 2.2241 2.2316 13 6 9.4307 2.4277 1.6641 14 7 9.8530 2.5888 2.8992 15 14 10.6502 2.4539 0.2493 16 1 10.8022 3.8450 -0.2476 17 1 11.9654 1.9499 0.7200 18 1 10.1525 1.5874 -0.8492 19 6 5.2668 2.9830 -0.0011 20 6 5.8214 4.3031 -0.0012 21 7 6.2615 5.3505 -0.0024 22 6 3.8825 2.8047 -0.0063 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7838 -0.5732 -0.0005 29 1 6.2229 -0.2624 -0.0009 30 1 8.0215 0.0393 -0.0576 31 1 7.9862 0.7598 -1.5561 32 1 10.7975 2.7215 3.0754 33 1 3.2259 3.6623 -0.0108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390065214.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:27 Heat of formation + Delta-G solvation = 22.984182 kcal Electronic energy + Delta-G solvation = -17103.191747 eV Core-core repulsion = 14322.675453 eV Total energy + Delta-G solvation = -2780.516294 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15666 -38.16833 -35.72319 -34.65314 -32.10834 -31.62454 -31.07078 -28.91139 -26.34142 -24.50088 -22.98279 -22.43646 -20.17588 -19.07102 -16.94530 -16.44511 -16.16228 -15.99121 -15.39667 -14.70436 -14.17875 -13.98492 -13.64592 -13.42489 -12.99203 -12.89188 -12.82667 -12.41039 -12.28453 -12.10398 -11.75071 -11.69427 -11.43160 -10.92944 -10.78091 -10.64667 -10.14762 -10.00054 -9.32946 -8.75991 -8.56498 -7.78746 -7.32418 -6.03208 -4.14923 1.07128 1.66902 3.04004 3.35625 3.39444 3.51537 3.61107 3.89738 4.24894 4.46492 4.68503 4.74529 4.78552 4.96157 5.03602 5.13549 5.23498 5.32012 5.42649 5.56527 5.58362 5.75494 5.82282 5.86352 6.04686 6.35798 6.50394 6.57472 6.80612 6.93684 7.45921 7.52220 8.06170 8.07574 8.25573 8.60761 8.95400 9.60098 11.06156 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032346 B = 0.006050 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.426609 B = 4626.675641 C = 5013.139890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.104 3.896 5 C -0.176 4.176 6 C -0.090 4.090 7 C -0.051 4.051 8 C 0.217 3.783 9 H 0.047 0.953 10 N -0.833 5.833 11 C -0.522 4.522 12 H 0.071 0.929 13 C 0.089 3.911 14 N -0.895 5.895 15 Si 0.861 3.139 16 H -0.296 1.296 17 H -0.302 1.302 18 H -0.191 1.191 19 C 0.010 3.990 20 C 0.269 3.731 21 N -0.418 5.418 22 C -0.105 4.105 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.332 0.668 31 H 0.310 0.690 32 H 0.264 0.736 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.985 -8.440 -8.163 19.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.059 3.941 5 C -0.195 4.195 6 C -0.109 4.109 7 C -0.056 4.056 8 C 0.107 3.893 9 H 0.065 0.935 10 N -0.363 5.363 11 C -0.560 4.560 12 H 0.089 0.911 13 C -0.115 4.115 14 N -0.531 5.531 15 Si 0.688 3.312 16 H -0.224 1.224 17 H -0.230 1.230 18 H -0.112 1.112 19 C 0.006 3.994 20 C -0.047 4.047 21 N -0.093 5.093 22 C -0.126 4.126 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.612 -6.301 -7.896 17.764 hybrid contribution -0.328 -0.916 -0.380 1.044 sum -14.941 -7.217 -8.276 18.542 Atomic orbital electron populations 1.21767 0.92993 1.02661 1.03460 1.22738 0.95627 0.82288 1.01403 1.86034 1.18940 1.28925 1.89395 1.18505 0.82196 0.93516 0.99862 1.21343 0.94316 0.97790 1.06051 1.20707 0.93869 0.97026 0.99284 1.21346 0.99569 0.91142 0.93549 1.18642 0.82511 0.90639 0.97508 0.93511 1.60005 1.64630 1.07015 1.04690 1.20609 0.93821 1.52324 0.89254 0.91063 1.24942 0.98569 0.92153 0.95880 1.69940 1.15650 1.47633 1.19900 0.87267 0.78712 0.78806 0.86406 1.22377 1.22951 1.11231 1.15547 0.91566 0.86471 1.05809 1.25304 0.93193 0.92401 0.93782 1.81134 1.07461 1.12368 1.08360 1.20206 0.93041 0.95435 1.03947 0.91620 0.90544 0.91542 0.92139 0.92007 0.85479 0.85056 0.85342 0.87806 0.92676 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.49 5.46 37.16 0.20 0.69 16 3 O -0.32 -4.00 10.13 -19.46 -0.20 -4.19 16 4 C 0.10 1.45 6.68 -39.28 -0.26 1.19 16 5 C -0.18 -2.31 9.03 -39.35 -0.36 -2.67 16 6 C -0.09 -1.38 9.25 -39.67 -0.37 -1.74 16 7 C -0.05 -0.94 5.02 -104.19 -0.52 -1.47 16 8 C 0.22 4.74 1.86 -70.02 -0.13 4.61 16 9 H 0.05 1.11 6.70 -51.93 -0.35 0.76 16 10 N -0.83 -15.85 5.43 -6.65 -0.04 -15.88 16 11 C -0.52 -14.22 9.29 -34.44 -0.32 -14.54 16 12 H 0.07 2.14 7.98 -52.48 -0.42 1.73 16 13 C 0.09 2.58 5.47 -17.82 -0.10 2.48 16 14 N -0.89 -27.69 13.96 55.43 0.77 -26.91 16 15 Si 0.86 21.67 26.94 -169.99 -4.58 17.09 16 16 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 17 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 18 H -0.19 -4.33 5.17 56.52 0.29 -4.04 16 19 C 0.01 0.18 5.73 -106.96 -0.61 -0.43 16 20 C 0.27 5.47 13.88 -22.47 -0.31 5.15 16 21 N -0.42 -9.25 18.54 41.84 0.78 -8.47 16 22 C -0.11 -1.60 9.69 -39.01 -0.38 -1.98 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 27 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.13 1.29 6.28 -52.49 -0.33 0.96 16 29 H 0.13 1.79 6.28 -52.49 -0.33 1.46 16 30 H 0.33 5.86 7.20 -39.29 -0.28 5.58 16 31 H 0.31 4.96 9.06 -39.29 -0.36 4.61 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 33 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 285.63 15.07 4.30 4.30 Total: -1.00 -32.59 285.63 -5.53 -38.11 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.80 Total: 5.30 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.77 Total: -9.36 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 1.51 Total: -51.27 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.20 Total: -4.19 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.58 Total: 17.09 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.59 -5.53 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390065214.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.097 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds