Wall clock time and date at job start Mon Mar 30 2020 04:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35912 * 117.00151 * 180.02562 * 3 2 1 5 5 C 1.38860 * 119.97857 * 359.97438 * 4 3 2 6 6 C 1.38246 * 120.24812 * 180.02562 * 5 4 3 7 7 C 1.37994 * 120.21104 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.01880 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47346 * 145.00096 * 8 7 6 10 10 N 1.46895 * 109.47378 * 24.99545 * 8 7 6 11 11 C 1.50702 * 109.46918 * 264.99988 * 8 7 6 12 12 H 1.08011 * 119.99925 * 0.02562 * 11 8 7 13 13 C 1.37872 * 120.00309 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00366 * 180.02562 * 13 11 8 15 15 Si 1.86801 * 119.99823 * 0.02562 * 13 11 8 16 16 H 1.48499 * 109.47372 * 90.00088 * 15 13 11 17 17 H 1.48505 * 109.47304 * 209.99788 * 15 13 11 18 18 H 1.48498 * 109.47201 * 329.99521 * 15 13 11 19 19 C 1.39626 * 119.96327 * 0.02562 * 7 6 5 20 20 C 1.43192 * 120.12590 * 179.97438 * 19 7 6 21 21 N 7.14252 * 131.48669 * 359.97438 * 2 1 3 22 22 C 1.38434 * 119.98203 * 179.72595 * 4 3 2 23 23 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 28 28 H 1.08001 * 119.87422 * 0.02562 * 5 4 3 29 29 H 1.08001 * 119.89468 * 180.02562 * 6 5 4 30 30 H 1.00896 * 111.00313 * 300.00723 * 10 8 7 31 31 H 1.00907 * 110.99871 * 63.95774 * 10 8 7 32 32 H 0.96997 * 120.00124 * 180.02562 * 14 13 11 33 33 H 1.08010 * 120.10679 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3538 1.5253 -0.0005 5 6 4.1992 0.4238 -0.0005 6 6 5.5706 0.5984 -0.0005 7 6 6.1087 1.8691 -0.0011 8 6 7.6043 2.0545 -0.0017 9 1 7.8612 2.9345 -0.5915 10 7 8.2445 0.8689 -0.5868 11 6 8.0881 2.2396 1.4135 12 1 7.3830 2.2241 2.2316 13 6 9.4307 2.4277 1.6641 14 7 9.8530 2.5888 2.8992 15 14 10.6502 2.4539 0.2493 16 1 10.8022 3.8450 -0.2476 17 1 11.9654 1.9499 0.7200 18 1 10.1525 1.5874 -0.8492 19 6 5.2668 2.9830 -0.0011 20 6 5.8214 4.3031 -0.0012 21 7 6.2615 5.3505 -0.0024 22 6 3.8825 2.8047 -0.0063 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7838 -0.5732 -0.0005 29 1 6.2229 -0.2624 -0.0009 30 1 8.0215 0.0393 -0.0576 31 1 7.9862 0.7598 -1.5561 32 1 10.7975 2.7215 3.0754 33 1 3.2259 3.6623 -0.0108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390065214.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:26 Heat of formation + Delta-G solvation = -0.087335 kcal Electronic energy + Delta-G solvation = -17104.192203 eV Core-core repulsion = 14322.675453 eV Total energy + Delta-G solvation = -2781.516750 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.29557 -39.36067 -37.32959 -36.20576 -33.98227 -32.57030 -32.32526 -30.14430 -28.23926 -25.56508 -24.49989 -23.36657 -21.72776 -20.19326 -18.98455 -17.62606 -17.21315 -16.97919 -16.93271 -16.34890 -15.83151 -15.29001 -15.01376 -14.79405 -14.31277 -14.18950 -14.01833 -13.93103 -13.66848 -13.32938 -13.15998 -12.87328 -12.80149 -12.59551 -12.17180 -11.82238 -11.73927 -11.57093 -11.28306 -10.75958 -9.98935 -9.06275 -8.90519 -8.25180 -6.37863 -0.20515 0.44280 1.48635 1.55133 1.64831 1.89873 1.97020 2.23390 2.58115 2.88294 3.08989 3.13704 3.81079 4.00606 4.05529 4.16925 4.17521 4.24113 4.40843 4.48896 4.51803 4.81234 4.91895 5.01798 5.04133 5.12483 5.27647 5.36040 5.40022 5.62370 5.65960 6.13648 6.45157 6.49274 6.51745 6.79495 7.08142 7.40218 8.87858 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032346 B = 0.006050 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.426609 B = 4626.675641 C = 5013.139890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.328 6.328 4 C 0.115 3.885 5 C -0.158 4.158 6 C -0.085 4.085 7 C -0.077 4.077 8 C 0.227 3.773 9 H 0.027 0.973 10 N -0.835 5.835 11 C -0.510 4.510 12 H 0.029 0.971 13 C 0.029 3.971 14 N -0.949 5.949 15 Si 0.914 3.086 16 H -0.316 1.316 17 H -0.311 1.311 18 H -0.143 1.143 19 C -0.011 4.011 20 C 0.280 3.720 21 N -0.465 5.465 22 C -0.105 4.105 23 H 0.063 0.937 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.168 0.832 29 H 0.151 0.849 30 H 0.344 0.656 31 H 0.336 0.664 32 H 0.261 0.739 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.052 -11.292 -10.144 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.242 6.242 4 C 0.069 3.931 5 C -0.177 4.177 6 C -0.103 4.103 7 C -0.083 4.083 8 C 0.117 3.883 9 H 0.045 0.955 10 N -0.368 5.368 11 C -0.548 4.548 12 H 0.048 0.952 13 C -0.170 4.170 14 N -0.589 5.589 15 Si 0.741 3.259 16 H -0.245 1.245 17 H -0.239 1.239 18 H -0.063 1.063 19 C -0.015 4.015 20 C -0.034 4.034 21 N -0.141 5.141 22 C -0.127 4.127 23 H 0.082 0.918 24 H 0.119 0.881 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.185 0.815 29 H 0.169 0.831 30 H 0.160 0.840 31 H 0.150 0.850 32 H 0.070 0.930 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.720 -9.183 -9.903 21.493 hybrid contribution 0.047 -0.115 0.271 0.298 sum -16.673 -9.298 -9.632 21.382 Atomic orbital electron populations 1.21807 0.91664 1.04143 1.03087 1.23145 0.96798 0.80580 1.02782 1.86061 1.17728 1.31613 1.88831 1.18570 0.83264 0.93130 0.98094 1.21699 0.93170 0.99409 1.03410 1.20893 0.95195 0.95976 0.98236 1.21048 0.97522 0.92836 0.96849 1.18162 0.85189 0.91143 0.93853 0.95477 1.59554 1.64480 1.06405 1.06361 1.20869 0.92634 1.50064 0.91244 0.95246 1.25824 1.00827 0.92479 0.97874 1.70089 1.15767 1.50803 1.22208 0.86565 0.76082 0.78299 0.84991 1.24510 1.23915 1.06273 1.15659 0.92838 0.85070 1.07899 1.25887 0.92233 0.92808 0.92468 1.81117 1.08826 1.13810 1.10381 1.20298 0.91908 0.96976 1.03484 0.91788 0.88127 0.92186 0.90257 0.90950 0.81497 0.83116 0.84021 0.84979 0.93043 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16 2 C 0.04 0.55 5.46 71.98 0.39 0.94 16 3 O -0.33 -7.02 10.13 -92.56 -0.94 -7.96 16 4 C 0.11 2.82 6.68 22.47 0.15 2.97 16 5 C -0.16 -3.44 9.03 22.42 0.20 -3.23 16 6 C -0.08 -2.29 9.25 22.21 0.21 -2.08 16 7 C -0.08 -2.76 5.02 -19.59 -0.10 -2.86 16 8 C 0.23 9.75 1.86 43.43 0.08 9.83 16 9 H 0.03 1.29 6.70 -2.39 -0.02 1.27 16 10 N -0.84 -29.29 5.43 -174.96 -0.95 -30.24 16 11 C -0.51 -28.31 9.29 25.60 0.24 -28.08 16 12 H 0.03 1.84 7.98 -2.90 -0.02 1.81 16 13 C 0.03 1.70 5.47 84.65 0.46 2.16 16 14 N -0.95 -61.04 13.96 21.45 0.30 -60.75 16 15 Si 0.91 45.15 26.94 68.60 1.85 47.00 16 16 H -0.32 -16.56 7.11 99.48 0.71 -15.86 16 17 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 18 H -0.14 -5.94 5.17 99.48 0.51 -5.43 16 19 C -0.01 -0.38 5.73 -21.38 -0.12 -0.50 16 20 C 0.28 11.68 13.88 88.33 1.23 12.90 16 21 N -0.47 -21.34 18.54 19.00 0.35 -20.98 16 22 C -0.11 -3.04 9.69 22.64 0.22 -2.82 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 0.79 7.66 -2.39 -0.02 0.77 16 27 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 28 H 0.17 2.33 6.28 -2.91 -0.02 2.31 16 29 H 0.15 3.44 6.28 -2.91 -0.02 3.43 16 30 H 0.34 10.98 7.20 -89.70 -0.65 10.33 16 31 H 0.34 9.39 9.06 -89.69 -0.81 8.58 16 32 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 33 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -74.42 285.63 3.81 -70.60 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -0.50 Total: 13.86 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 3.70 Total: -11.53 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -0.30 Total: -111.97 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.94 Total: -7.96 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.85 Total: 47.00 kcal Total: -74.42 3.81 -70.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390065214.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.517 kcal (2) G-P(sol) polarization free energy of solvation -74.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds