Wall clock time and date at job start Mon Mar 30 2020 04:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 274.72222 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47294 * 90.00155 * 9 7 5 11 11 H 1.48499 * 109.47218 * 210.00015 * 9 7 5 12 12 H 1.48496 * 109.47166 * 329.99846 * 9 7 5 13 13 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 14 14 C 1.38311 * 120.08392 * 279.72726 * 13 2 1 15 15 C 1.37943 * 120.36917 * 179.73935 * 14 13 2 16 16 C 1.39365 * 120.13423 * 0.50929 * 15 14 13 17 17 C 1.38902 * 118.94397 * 359.76847 * 16 15 14 18 18 C 1.37676 * 120.80665 * 359.97438 * 17 16 15 19 19 C 1.51130 * 106.34181 * 179.97438 * 17 16 15 20 20 C 1.51400 * 104.06961 * 359.97438 * 19 17 16 21 21 O 1.21287 * 126.44618 * 179.97438 * 20 19 17 22 22 N 1.34371 * 107.11259 * 0.02562 * 20 19 17 23 23 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 25 25 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 26 26 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 27 27 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 28 28 H 1.07994 * 119.81201 * 359.97438 * 14 13 2 29 29 H 1.07997 * 119.92973 * 180.28137 * 15 14 13 30 30 H 1.08006 * 120.03977 * 179.97438 * 18 17 16 31 31 H 1.08996 * 110.51304 * 118.64346 * 19 17 16 32 32 H 1.09004 * 110.51526 * 241.35684 * 19 17 16 33 33 H 0.96998 * 123.87783 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0419 2.4228 7 6 2.6226 -0.6590 3.5063 8 7 2.9361 -1.9360 3.4471 9 14 2.8076 0.2746 5.1136 10 1 1.5434 0.1835 5.8875 11 1 3.9161 -0.3171 5.9050 12 1 3.1105 1.6997 4.8263 13 6 2.0323 -0.7104 -1.2305 14 6 2.0728 -2.0925 -1.2651 15 6 2.5265 -2.7489 -2.3904 16 6 2.9580 -2.0218 -3.4982 17 6 2.9178 -0.6342 -3.4489 18 6 2.4595 0.0184 -2.3266 19 6 3.4424 -0.1460 -4.7795 20 6 3.7646 -1.4168 -5.5368 21 8 4.2147 -1.4914 -6.6606 22 7 3.4571 -2.4465 -4.7301 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 2.2491 -1.6318 1.1526 27 1 3.2629 -2.3923 4.2382 28 1 1.7438 -2.6609 -0.4079 29 1 2.5508 -3.8283 -2.4114 30 1 2.4340 1.0979 -2.3015 31 1 2.6786 0.4282 -5.3038 32 1 4.3423 0.4528 -4.6388 33 1 3.5698 -3.3781 -4.9757 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393788629.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:34 Heat of formation + Delta-G solvation = 6.538928 kcal Electronic energy + Delta-G solvation = -16986.537444 eV Core-core repulsion = 14205.308031 eV Total energy + Delta-G solvation = -2781.229414 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.35442 -38.63805 -36.54306 -34.42156 -32.22140 -32.00442 -29.36455 -28.09692 -27.58014 -24.13149 -22.53716 -22.12929 -21.15855 -19.66298 -17.84329 -17.39720 -16.57292 -16.04742 -15.28031 -14.92189 -14.32009 -14.08895 -13.78351 -13.29938 -13.14046 -13.04920 -12.77190 -12.60762 -12.29472 -12.08011 -11.43171 -10.97073 -10.87287 -10.75864 -10.48812 -10.38493 -10.23559 -10.01421 -9.69989 -8.98345 -8.69753 -7.77996 -7.02388 -5.81202 -3.09938 1.29813 1.50754 2.44105 2.98466 3.41383 3.46813 3.48301 3.93760 4.10096 4.40945 4.57609 4.92249 5.23476 5.28346 5.30423 5.38208 5.54138 5.64186 5.75653 5.79288 6.02996 6.16627 6.20419 6.30622 6.42382 6.54050 6.65785 6.68002 6.77995 6.91243 7.09889 7.18331 7.66661 7.88829 8.37287 9.48780 10.04113 10.39016 11.41497 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.042172 B = 0.004704 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.784761 B = 5950.481947 C = 6081.212590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.209 3.791 3 H 0.057 0.943 4 N -0.722 5.722 5 C -0.240 4.240 6 H 0.072 0.928 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.079 4.079 14 C -0.071 4.071 15 C -0.132 4.132 16 C 0.117 3.883 17 C -0.144 4.144 18 C -0.067 4.067 19 C -0.112 4.112 20 C 0.528 3.472 21 O -0.518 6.518 22 N -0.658 5.658 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.038 0.962 26 H 0.385 0.615 27 H 0.256 0.744 28 H 0.136 0.864 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 1.052 -13.570 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.099 3.901 3 H 0.075 0.925 4 N -0.364 5.364 5 C -0.371 4.371 6 H 0.090 0.910 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.738 3.262 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.207 1.207 13 C -0.081 4.081 14 C -0.090 4.090 15 C -0.152 4.152 16 C 0.021 3.979 17 C -0.147 4.147 18 C -0.086 4.086 19 C -0.151 4.151 20 C 0.316 3.684 21 O -0.394 6.394 22 N -0.301 5.301 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.220 0.780 27 H 0.065 0.935 28 H 0.154 0.846 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -1.714 1.253 -14.070 14.230 hybrid contribution 0.266 -0.479 0.920 1.071 sum -1.448 0.773 -13.150 13.252 Atomic orbital electron populations 1.22429 0.98231 1.01178 1.00171 1.19170 0.92083 0.94962 0.83863 0.92512 1.42527 1.78237 1.10638 1.05016 1.19246 1.36552 0.94037 0.87252 0.91018 1.24732 1.01945 0.96005 0.98111 1.69654 1.50676 1.08745 1.29008 0.86192 0.77310 0.78845 0.83850 1.21708 1.21799 1.20721 1.20390 0.98050 0.93854 0.95779 1.20851 0.96999 0.94411 0.96698 1.20348 1.03606 0.99471 0.91821 1.18068 0.99516 0.93690 0.86588 1.19664 1.06009 0.92774 0.96215 1.20125 0.97711 0.99838 0.90906 1.21004 1.03914 0.96977 0.93237 1.20645 0.76152 0.86789 0.84819 1.90792 1.44919 1.86414 1.17283 1.43675 1.61759 1.10271 1.14359 0.93312 0.92405 0.94267 0.78030 0.93463 0.84619 0.85924 0.85497 0.86237 0.86178 0.75258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.47 37.16 0.35 -2.36 16 2 C 0.21 3.90 3.10 -69.08 -0.21 3.69 16 3 H 0.06 1.06 7.95 -51.93 -0.41 0.65 16 4 N -0.72 -17.15 5.07 -54.55 -0.28 -17.42 16 5 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 9 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C -0.08 -1.27 4.96 -104.54 -0.52 -1.79 16 14 C -0.07 -1.10 9.04 -39.66 -0.36 -1.46 16 15 C -0.13 -1.76 10.07 -39.27 -0.40 -2.15 16 16 C 0.12 1.51 7.11 -83.69 -0.60 0.92 16 17 C -0.14 -1.83 6.35 -104.37 -0.66 -2.49 16 18 C -0.07 -0.92 9.66 -39.73 -0.38 -1.30 16 19 C -0.11 -1.18 6.88 -28.48 -0.20 -1.38 16 20 C 0.53 6.69 8.71 -10.82 -0.09 6.59 16 21 O -0.52 -8.09 18.03 5.55 0.10 -7.99 16 22 N -0.66 -7.57 5.88 -9.70 -0.06 -7.62 16 23 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.38 9.60 6.05 -40.82 -0.25 9.35 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.14 2.25 6.89 -52.49 -0.36 1.89 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.13 1.49 8.04 -52.48 -0.42 1.07 16 31 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.41 3.83 8.96 -40.82 -0.37 3.47 16 LS Contribution 286.51 15.07 4.32 4.32 Total: -1.00 -31.06 286.51 -7.42 -38.48 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.89 Total: 8.75 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -3.31 Total: -8.70 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.39 Total: -51.64 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.10 Total: -7.99 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.06 -7.42 -38.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393788629.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.023 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds