Wall clock time and date at job start Mon Mar 30 2020 04:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 274.72222 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47294 * 90.00155 * 9 7 5 11 11 H 1.48499 * 109.47218 * 210.00015 * 9 7 5 12 12 H 1.48496 * 109.47166 * 329.99846 * 9 7 5 13 13 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 14 14 C 1.38311 * 120.08392 * 279.72726 * 13 2 1 15 15 C 1.37943 * 120.36917 * 179.73935 * 14 13 2 16 16 C 1.39365 * 120.13423 * 0.50929 * 15 14 13 17 17 C 1.38902 * 118.94397 * 359.76847 * 16 15 14 18 18 C 1.37676 * 120.80665 * 359.97438 * 17 16 15 19 19 C 1.51130 * 106.34181 * 179.97438 * 17 16 15 20 20 C 1.51400 * 104.06961 * 359.97438 * 19 17 16 21 21 O 1.21287 * 126.44618 * 179.97438 * 20 19 17 22 22 N 1.34371 * 107.11259 * 0.02562 * 20 19 17 23 23 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 25 25 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 26 26 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 27 27 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 28 28 H 1.07994 * 119.81201 * 359.97438 * 14 13 2 29 29 H 1.07997 * 119.92973 * 180.28137 * 15 14 13 30 30 H 1.08006 * 120.03977 * 179.97438 * 18 17 16 31 31 H 1.08996 * 110.51304 * 118.64346 * 19 17 16 32 32 H 1.09004 * 110.51526 * 241.35684 * 19 17 16 33 33 H 0.96998 * 123.87783 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0419 2.4228 7 6 2.6226 -0.6590 3.5063 8 7 2.9361 -1.9360 3.4471 9 14 2.8076 0.2746 5.1136 10 1 1.5434 0.1835 5.8875 11 1 3.9161 -0.3171 5.9050 12 1 3.1105 1.6997 4.8263 13 6 2.0323 -0.7104 -1.2305 14 6 2.0728 -2.0925 -1.2651 15 6 2.5265 -2.7489 -2.3904 16 6 2.9580 -2.0218 -3.4982 17 6 2.9178 -0.6342 -3.4489 18 6 2.4595 0.0184 -2.3266 19 6 3.4424 -0.1460 -4.7795 20 6 3.7646 -1.4168 -5.5368 21 8 4.2147 -1.4914 -6.6606 22 7 3.4571 -2.4465 -4.7301 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 2.2491 -1.6318 1.1526 27 1 3.2629 -2.3923 4.2382 28 1 1.7438 -2.6609 -0.4079 29 1 2.5508 -3.8283 -2.4114 30 1 2.4340 1.0979 -2.3015 31 1 2.6786 0.4282 -5.3038 32 1 4.3423 0.4528 -4.6388 33 1 3.5698 -3.3781 -4.9757 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393788629.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:34 Heat of formation + Delta-G solvation = -13.758225 kcal Electronic energy + Delta-G solvation = -16987.417595 eV Core-core repulsion = 14205.308031 eV Total energy + Delta-G solvation = -2782.109564 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.36999 -39.78521 -37.83459 -35.91000 -33.76897 -33.22105 -30.87520 -29.42750 -28.70555 -25.94811 -23.92300 -23.21317 -22.14191 -20.98904 -19.30477 -18.85911 -17.67108 -17.01007 -16.79582 -16.43438 -15.72660 -15.33155 -15.04940 -14.77741 -14.40027 -14.27511 -13.90467 -13.87949 -13.47851 -13.37639 -13.08955 -12.76570 -12.48587 -12.16494 -12.02692 -11.72030 -11.58504 -11.52507 -11.26344 -10.93299 -9.75560 -9.00471 -8.85608 -7.89991 -5.17478 0.20806 0.43411 1.42975 1.51315 1.52030 1.60150 2.02698 2.59683 2.83689 3.13533 3.45163 3.45711 3.92680 4.02970 4.07842 4.30749 4.41173 4.53711 4.55232 4.64174 4.83390 4.89473 5.02138 5.08737 5.16718 5.23462 5.39338 5.55528 5.57583 5.61566 5.78695 5.84688 6.07793 6.32892 6.93752 7.39427 8.15196 8.38322 9.33664 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.042172 B = 0.004704 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.784761 B = 5950.481947 C = 6081.212590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.205 3.795 3 H 0.058 0.942 4 N -0.735 5.735 5 C -0.235 4.235 6 H 0.079 0.921 7 C -0.075 4.075 8 N -0.970 5.970 9 Si 0.968 3.032 10 H -0.289 1.289 11 H -0.299 1.299 12 H -0.269 1.269 13 C -0.098 4.098 14 C -0.087 4.087 15 C -0.129 4.129 16 C 0.118 3.882 17 C -0.140 4.140 18 C -0.063 4.063 19 C -0.104 4.104 20 C 0.526 3.474 21 O -0.550 6.550 22 N -0.650 5.650 23 H 0.040 0.960 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.375 0.625 27 H 0.249 0.751 28 H 0.116 0.884 29 H 0.142 0.858 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 2.402 -15.017 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.097 3.903 3 H 0.076 0.924 4 N -0.377 5.377 5 C -0.367 4.367 6 H 0.096 0.904 7 C -0.267 4.267 8 N -0.622 5.622 9 Si 0.798 3.202 10 H -0.216 1.216 11 H -0.226 1.226 12 H -0.193 1.193 13 C -0.099 4.099 14 C -0.106 4.106 15 C -0.150 4.150 16 C 0.022 3.978 17 C -0.143 4.143 18 C -0.082 4.082 19 C -0.143 4.143 20 C 0.316 3.684 21 O -0.428 6.428 22 N -0.293 5.293 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.208 0.792 27 H 0.058 0.942 28 H 0.134 0.866 29 H 0.160 0.840 30 H 0.167 0.833 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -1.821 2.628 -15.550 15.875 hybrid contribution 0.262 -0.904 1.235 1.553 sum -1.558 1.725 -14.315 14.502 Atomic orbital electron populations 1.22274 0.96807 1.00961 1.00932 1.19334 0.92928 0.94754 0.83287 0.92379 1.42741 1.78458 1.10435 1.06030 1.19650 1.34412 0.94365 0.88290 0.90360 1.25481 1.03106 0.96860 1.01285 1.69809 1.52743 1.10259 1.29346 0.85207 0.76710 0.78178 0.80091 1.21642 1.22630 1.19345 1.20169 1.00008 0.94029 0.95729 1.20750 0.98383 0.94462 0.97040 1.20430 1.02851 1.00538 0.91190 1.18137 0.98958 0.94048 0.86701 1.19871 1.04922 0.92722 0.96737 1.20237 0.96824 1.00870 0.90221 1.21090 1.05399 0.96275 0.91520 1.20959 0.75430 0.87625 0.84417 1.90786 1.46485 1.86886 1.18672 1.43653 1.60973 1.10965 1.13663 0.94033 0.93978 0.91038 0.79182 0.94201 0.86597 0.84013 0.83278 0.83603 0.84195 0.74172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.94 9.47 71.98 0.68 -4.25 16 2 C 0.20 7.52 3.10 44.24 0.14 7.66 16 3 H 0.06 2.10 7.95 -2.39 -0.02 2.08 16 4 N -0.74 -35.33 5.07 -326.50 -1.66 -36.99 16 5 C -0.24 -12.58 9.93 84.03 0.83 -11.74 16 6 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 7 C -0.08 -4.21 5.50 84.86 0.47 -3.75 16 8 N -0.97 -58.23 13.06 21.65 0.28 -57.95 16 9 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 13 C -0.10 -3.04 4.96 -19.81 -0.10 -3.14 16 14 C -0.09 -2.71 9.04 22.22 0.20 -2.51 16 15 C -0.13 -3.28 10.07 22.47 0.23 -3.06 16 16 C 0.12 2.76 7.11 38.35 0.27 3.03 16 17 C -0.14 -3.12 6.35 -19.70 -0.13 -3.25 16 18 C -0.06 -1.56 9.66 22.17 0.21 -1.34 16 19 C -0.10 -1.81 6.88 29.46 0.20 -1.60 16 20 C 0.53 11.93 8.71 87.94 0.77 12.70 16 21 O -0.55 -16.09 18.03 -3.05 -0.06 -16.15 16 22 N -0.65 -13.37 5.88 -303.20 -1.78 -15.15 16 23 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.37 19.28 6.05 -92.71 -0.56 18.72 16 27 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 28 H 0.12 4.01 6.89 -2.91 -0.02 3.99 16 29 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.15 2.97 8.04 -2.91 -0.02 2.95 16 31 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.14 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.42 6.96 8.96 -92.71 -0.83 6.13 16 Total: -1.00 -66.76 286.51 2.35 -64.41 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: -0.25 Total: 25.86 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 3.78 Total: -11.25 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -3.16 Total: -110.09 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.06 Total: -16.15 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -66.76 2.35 -64.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393788629.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.651 kcal (2) G-P(sol) polarization free energy of solvation -66.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds