Wall clock time and date at job start Mon Mar 30 2020 04:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 5 5 C 1.36936 * 119.99838 * 84.99783 * 4 2 1 6 6 H 1.07999 * 120.00085 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99824 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99803 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99851 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47209 * 90.00616 * 9 7 5 11 11 H 1.48506 * 109.47027 * 210.00119 * 9 7 5 12 12 H 1.48501 * 109.47427 * 329.99828 * 9 7 5 13 13 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 14 14 C 1.38301 * 120.08504 * 79.99839 * 13 2 1 15 15 C 1.37946 * 120.37564 * 180.02562 * 14 13 2 16 16 C 1.39362 * 120.12896 * 0.02562 * 15 14 13 17 17 C 1.38905 * 118.94694 * 359.97438 * 16 15 14 18 18 C 1.37677 * 120.80647 * 359.72285 * 17 16 15 19 19 C 1.51138 * 106.34083 * 180.02562 * 17 16 15 20 20 C 1.51393 * 104.06975 * 359.97438 * 19 17 16 21 21 O 1.21287 * 126.44417 * 180.02562 * 20 19 17 22 22 N 1.34379 * 107.11446 * 0.02562 * 20 19 17 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.96992 * 120.00062 * 265.00053 * 4 2 1 27 27 H 0.97000 * 119.99658 * 180.02562 * 8 7 5 28 28 H 1.08000 * 119.81341 * 359.97438 * 14 13 2 29 29 H 1.07999 * 119.93104 * 180.02562 * 15 14 13 30 30 H 1.07996 * 120.04453 * 180.30402 * 18 17 16 31 31 H 1.08992 * 110.51151 * 118.64802 * 19 17 16 32 32 H 1.09004 * 110.50415 * 241.21970 * 19 17 16 33 33 H 0.96993 * 123.87414 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8918 1.0404 -2.4243 7 6 2.6114 -0.6618 -3.5093 8 7 2.7375 -0.0050 -4.6430 9 14 3.0557 -2.4742 -3.4255 10 1 1.8584 -3.2927 -3.7444 11 1 4.1308 -2.7662 -4.4075 12 1 3.5313 -2.8046 -2.0580 13 6 2.0324 -0.7104 1.2304 14 6 2.0676 -2.0925 1.2672 15 6 2.5258 -2.7489 2.3905 16 6 2.9568 -2.0219 3.4986 17 6 2.9166 -0.6343 3.4493 18 6 2.4646 0.0185 2.3245 19 6 3.4407 -0.1462 4.7802 20 6 3.7614 -1.4170 5.5380 21 8 4.2106 -1.4916 6.6621 22 7 3.4547 -2.4467 4.7309 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 2.2491 -1.6316 -1.1527 27 1 3.0602 -0.4624 -5.4351 28 1 1.7336 -2.6611 0.4118 29 1 2.5506 -3.8285 2.4113 30 1 2.4431 1.0979 2.2978 31 1 4.3405 0.4527 4.6399 32 1 2.6773 0.4300 5.3031 33 1 3.5661 -3.3782 4.9770 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393788637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:36 Heat of formation + Delta-G solvation = 10.982111 kcal Electronic energy + Delta-G solvation = -17067.570603 eV Core-core repulsion = 14286.533860 eV Total energy + Delta-G solvation = -2781.036743 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.46246 -38.76816 -36.69255 -34.57344 -32.34029 -32.03819 -29.82468 -28.40044 -27.72148 -24.05950 -22.37937 -22.27391 -21.26389 -19.74847 -17.97303 -17.89762 -16.68447 -16.13439 -15.32391 -15.06643 -14.47034 -14.11568 -13.93310 -13.41283 -13.27220 -13.08056 -12.89408 -12.55702 -12.46954 -12.23464 -11.82788 -11.12508 -10.96013 -10.81338 -10.60169 -10.51647 -10.27760 -10.08716 -9.62813 -9.01896 -8.83622 -7.90849 -7.33977 -5.81370 -3.17319 1.17170 1.36534 2.34471 2.88256 3.33472 3.35182 3.41981 3.79608 4.00386 4.31464 4.54737 4.80035 5.06549 5.18228 5.21222 5.22380 5.42856 5.49382 5.51044 5.67669 5.88951 6.04122 6.08369 6.18034 6.27189 6.40806 6.53585 6.54925 6.65757 6.81896 6.95132 7.05273 7.79845 7.94096 8.37359 9.14976 9.87307 10.06302 11.36809 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036070 B = 0.005371 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.089796 B = 5212.147276 C = 5545.348876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.215 3.785 3 H 0.066 0.934 4 N -0.746 5.746 5 C -0.244 4.244 6 H 0.092 0.908 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.879 3.121 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 C -0.081 4.081 14 C -0.078 4.078 15 C -0.132 4.132 16 C 0.120 3.880 17 C -0.141 4.141 18 C -0.063 4.063 19 C -0.113 4.113 20 C 0.528 3.472 21 O -0.516 6.516 22 N -0.658 5.658 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.361 0.639 27 H 0.260 0.740 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.570 -3.343 16.801 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.106 3.894 3 H 0.084 0.916 4 N -0.390 5.390 5 C -0.374 4.374 6 H 0.110 0.890 7 C -0.189 4.189 8 N -0.580 5.580 9 Si 0.710 3.290 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C -0.083 4.083 14 C -0.097 4.097 15 C -0.153 4.153 16 C 0.024 3.976 17 C -0.144 4.144 18 C -0.082 4.082 19 C -0.152 4.152 20 C 0.316 3.684 21 O -0.391 6.391 22 N -0.301 5.301 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.195 0.805 27 H 0.070 0.930 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.286 -3.079 17.259 17.579 hybrid contribution 0.421 -1.944 -0.105 1.992 sum -0.866 -5.023 17.154 17.896 Atomic orbital electron populations 1.22398 0.97671 1.01212 1.00745 1.19139 0.92262 0.95225 0.82821 0.91610 1.42871 1.79807 1.09473 1.06803 1.19067 1.37190 0.95770 0.85365 0.88998 1.24649 1.01270 0.97433 0.95562 1.69694 1.52480 1.35536 1.00271 0.86624 0.78252 0.86985 0.77172 1.20981 1.21661 1.20228 1.20393 0.98147 0.93740 0.96046 1.20778 0.97730 0.94433 0.96774 1.20320 1.03641 0.99457 0.91880 1.18059 0.99304 0.93703 0.86568 1.19701 1.05738 0.92741 0.96217 1.20147 0.97303 1.00037 0.90721 1.21018 1.04062 0.96998 0.93123 1.20643 0.76131 0.86747 0.84837 1.90799 1.44753 1.86370 1.17217 1.43685 1.61869 1.10324 1.14257 0.93918 0.93416 0.91883 0.80493 0.93001 0.85229 0.85907 0.85173 0.86037 0.86081 0.75226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.47 37.16 0.35 -2.24 16 2 C 0.21 3.82 3.10 -69.08 -0.21 3.61 16 3 H 0.07 1.19 7.95 -51.93 -0.41 0.78 16 4 N -0.75 -16.65 4.87 -54.55 -0.27 -16.91 16 5 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 6 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 8 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 9 Si 0.88 21.40 27.73 -169.99 -4.71 16.68 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.28 6.52 56.52 0.37 -5.92 16 13 C -0.08 -1.23 4.96 -104.54 -0.52 -1.75 16 14 C -0.08 -1.13 9.04 -39.67 -0.36 -1.49 16 15 C -0.13 -1.62 10.07 -39.27 -0.40 -2.02 16 16 C 0.12 1.44 7.11 -83.69 -0.60 0.84 16 17 C -0.14 -1.68 6.35 -104.37 -0.66 -2.34 16 18 C -0.06 -0.81 9.66 -39.73 -0.38 -1.19 16 19 C -0.11 -1.11 6.88 -28.48 -0.20 -1.31 16 20 C 0.53 6.33 8.71 -10.82 -0.09 6.24 16 21 O -0.52 -7.74 18.03 5.55 0.10 -7.64 16 22 N -0.66 -7.06 5.88 -9.70 -0.06 -7.12 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.36 7.90 3.93 -40.82 -0.16 7.74 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 28 H 0.13 1.91 6.91 -52.49 -0.36 1.55 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.13 1.42 8.04 -52.49 -0.42 1.00 16 31 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.41 3.53 8.96 -40.82 -0.37 3.16 16 LS Contribution 283.41 15.07 4.27 4.27 Total: -1.00 -32.08 283.41 -7.06 -39.15 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.85 Total: 7.71 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.32 Total: -8.30 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.45 Total: -51.86 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.10 Total: -7.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.08 -7.06 -39.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393788637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.128 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds