Wall clock time and date at job start Mon Mar 30 2020 04:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 5 5 C 1.36936 * 119.99838 * 84.99783 * 4 2 1 6 6 H 1.07999 * 120.00085 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99824 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99803 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99851 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47209 * 90.00616 * 9 7 5 11 11 H 1.48506 * 109.47027 * 210.00119 * 9 7 5 12 12 H 1.48501 * 109.47427 * 329.99828 * 9 7 5 13 13 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 14 14 C 1.38301 * 120.08504 * 79.99839 * 13 2 1 15 15 C 1.37946 * 120.37564 * 180.02562 * 14 13 2 16 16 C 1.39362 * 120.12896 * 0.02562 * 15 14 13 17 17 C 1.38905 * 118.94694 * 359.97438 * 16 15 14 18 18 C 1.37677 * 120.80647 * 359.72285 * 17 16 15 19 19 C 1.51138 * 106.34083 * 180.02562 * 17 16 15 20 20 C 1.51393 * 104.06975 * 359.97438 * 19 17 16 21 21 O 1.21287 * 126.44417 * 180.02562 * 20 19 17 22 22 N 1.34379 * 107.11446 * 0.02562 * 20 19 17 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.96992 * 120.00062 * 265.00053 * 4 2 1 27 27 H 0.97000 * 119.99658 * 180.02562 * 8 7 5 28 28 H 1.08000 * 119.81341 * 359.97438 * 14 13 2 29 29 H 1.07999 * 119.93104 * 180.02562 * 15 14 13 30 30 H 1.07996 * 120.04453 * 180.30402 * 18 17 16 31 31 H 1.08992 * 110.51151 * 118.64802 * 19 17 16 32 32 H 1.09004 * 110.50415 * 241.21970 * 19 17 16 33 33 H 0.96993 * 123.87414 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8918 1.0404 -2.4243 7 6 2.6114 -0.6618 -3.5093 8 7 2.7375 -0.0050 -4.6430 9 14 3.0557 -2.4742 -3.4255 10 1 1.8584 -3.2927 -3.7444 11 1 4.1308 -2.7662 -4.4075 12 1 3.5313 -2.8046 -2.0580 13 6 2.0324 -0.7104 1.2304 14 6 2.0676 -2.0925 1.2672 15 6 2.5258 -2.7489 2.3905 16 6 2.9568 -2.0219 3.4986 17 6 2.9166 -0.6343 3.4493 18 6 2.4646 0.0185 2.3245 19 6 3.4407 -0.1462 4.7802 20 6 3.7614 -1.4170 5.5380 21 8 4.2106 -1.4916 6.6621 22 7 3.4547 -2.4467 4.7309 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 2.2491 -1.6316 -1.1527 27 1 3.0602 -0.4624 -5.4351 28 1 1.7336 -2.6611 0.4118 29 1 2.5506 -3.8285 2.4113 30 1 2.4431 1.0979 2.2978 31 1 4.3405 0.4527 4.6399 32 1 2.6773 0.4300 5.3031 33 1 3.5661 -3.3782 4.9770 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393788637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:36 Heat of formation + Delta-G solvation = -10.779612 kcal Electronic energy + Delta-G solvation = -17068.514262 eV Core-core repulsion = 14286.533860 eV Total energy + Delta-G solvation = -2781.980402 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.39688 -39.84546 -37.93925 -35.99413 -33.88590 -33.25116 -31.39878 -29.57023 -28.74970 -25.76605 -23.79338 -23.27071 -22.17556 -21.07169 -19.83357 -18.89481 -17.69695 -17.02651 -16.69417 -16.65507 -15.82324 -15.28944 -15.08207 -14.81874 -14.45044 -14.32312 -14.05211 -13.91038 -13.65657 -13.54549 -13.27941 -12.83681 -12.52673 -12.08310 -12.04308 -11.76794 -11.66050 -11.56928 -11.29405 -10.98473 -9.79415 -9.31529 -8.90690 -7.98580 -5.31348 0.16814 0.39563 1.39015 1.40756 1.42468 1.49599 2.00697 2.51422 2.78434 3.10448 3.34176 3.41872 3.73422 3.89056 3.98479 4.26224 4.35209 4.50404 4.51932 4.62092 4.77063 4.86441 4.98449 5.04282 5.13568 5.20530 5.34507 5.53935 5.57410 5.73250 5.77902 5.84151 6.03854 6.26125 6.92212 7.11995 7.87879 8.06588 9.22990 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036070 B = 0.005371 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.089796 B = 5212.147276 C = 5545.348876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.210 3.790 3 H 0.058 0.942 4 N -0.749 5.749 5 C -0.225 4.225 6 H 0.061 0.939 7 C -0.064 4.064 8 N -0.985 5.985 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.250 1.250 13 C -0.099 4.099 14 C -0.092 4.092 15 C -0.127 4.127 16 C 0.120 3.880 17 C -0.139 4.139 18 C -0.061 4.061 19 C -0.107 4.107 20 C 0.526 3.474 21 O -0.549 6.549 22 N -0.650 5.650 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.365 0.635 27 H 0.256 0.744 28 H 0.123 0.877 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 -4.501 19.214 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.102 3.898 3 H 0.076 0.924 4 N -0.394 5.394 5 C -0.356 4.356 6 H 0.079 0.921 7 C -0.255 4.255 8 N -0.636 5.636 9 Si 0.774 3.226 10 H -0.203 1.203 11 H -0.227 1.227 12 H -0.174 1.174 13 C -0.101 4.101 14 C -0.111 4.111 15 C -0.148 4.148 16 C 0.023 3.977 17 C -0.141 4.141 18 C -0.080 4.080 19 C -0.145 4.145 20 C 0.316 3.684 21 O -0.428 6.428 22 N -0.293 5.293 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.200 0.800 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -1.221 -4.255 19.736 20.226 hybrid contribution 0.351 -1.507 -0.740 1.715 sum -0.870 -5.762 18.996 19.870 Atomic orbital electron populations 1.22258 0.96317 1.01516 1.01019 1.19278 0.93111 0.94823 0.82551 0.92399 1.42889 1.79995 1.09699 1.06789 1.19048 1.34756 0.94660 0.87090 0.92114 1.25434 1.02540 1.02285 0.95244 1.69878 1.54950 1.37613 1.01172 0.85537 0.77752 0.81243 0.78112 1.20311 1.22651 1.17427 1.20099 1.00231 0.94148 0.95588 1.20787 0.98697 0.94188 0.97477 1.20460 1.02576 1.00702 0.91056 1.18169 0.98791 0.93974 0.86744 1.19864 1.04844 0.92834 0.96601 1.20233 0.96639 1.00901 0.90248 1.21097 1.05434 0.96334 0.91639 1.20943 0.75415 0.87622 0.84427 1.90792 1.46415 1.86874 1.18694 1.43651 1.61031 1.10960 1.13612 0.90866 0.93074 0.94328 0.80037 0.93495 0.85897 0.83540 0.83487 0.84245 0.83689 0.74091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.47 71.98 0.68 -4.04 16 2 C 0.21 7.27 3.10 44.24 0.14 7.41 16 3 H 0.06 2.08 7.95 -2.39 -0.02 2.06 16 4 N -0.75 -33.01 4.87 -326.50 -1.59 -34.61 16 5 C -0.22 -12.33 10.41 84.03 0.87 -11.46 16 6 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 7 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 8 N -0.99 -62.35 13.97 21.65 0.30 -62.04 16 9 Si 0.95 44.26 27.73 68.60 1.90 46.16 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 12 H -0.25 -10.44 6.52 99.48 0.65 -9.79 16 13 C -0.10 -2.78 4.96 -19.81 -0.10 -2.88 16 14 C -0.09 -2.44 9.04 22.22 0.20 -2.24 16 15 C -0.13 -2.72 10.07 22.47 0.23 -2.49 16 16 C 0.12 2.47 7.11 38.35 0.27 2.74 16 17 C -0.14 -2.81 6.35 -19.70 -0.13 -2.93 16 18 C -0.06 -1.40 9.66 22.17 0.21 -1.18 16 19 C -0.11 -1.70 6.88 29.46 0.20 -1.49 16 20 C 0.53 11.10 8.71 87.94 0.77 11.86 16 21 O -0.55 -15.38 18.03 -3.05 -0.05 -15.44 16 22 N -0.65 -11.92 5.88 -303.20 -1.78 -13.70 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.37 15.41 3.93 -92.71 -0.36 15.05 16 27 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.12 3.36 6.91 -2.91 -0.02 3.34 16 29 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 30 H 0.15 2.77 8.04 -2.91 -0.02 2.74 16 31 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.42 6.00 8.96 -92.71 -0.83 5.17 16 Total: -1.00 -70.17 283.41 2.48 -67.68 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.11 Total: 21.87 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 3.82 Total: -9.92 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -3.07 Total: -110.35 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.05 Total: -15.44 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Total: -70.17 2.48 -67.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393788637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.901 kcal (2) G-P(sol) polarization free energy of solvation -70.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds