Wall clock time and date at job start Mon Mar 30 2020 04:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47250 * 2 1 4 4 C 1.47194 * 109.47634 * 120.00153 * 2 1 3 5 5 N 2.60793 * 109.47320 * 120.00395 * 2 1 3 6 6 C 1.53005 * 109.47148 * 240.00638 * 2 1 3 7 7 O 1.42897 * 109.47198 * 64.99663 * 6 2 1 8 8 C 1.35683 * 116.99685 * 180.02562 * 7 6 2 9 9 C 1.39305 * 119.81261 * 180.02562 * 8 7 6 10 10 C 1.36441 * 120.18225 * 179.72110 * 9 8 7 11 11 C 1.40834 * 119.80994 * 0.26831 * 10 9 8 12 12 C 1.41215 * 120.17646 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00196 * 204.54801 * 12 11 10 14 14 C 1.39888 * 120.00093 * 24.55741 * 12 11 10 15 15 N 1.30881 * 120.00110 * 17.92429 * 14 12 11 16 16 Si 1.86803 * 119.99833 * 197.92928 * 14 12 11 17 17 H 1.48503 * 109.47208 * 59.99802 * 16 14 12 18 18 H 1.48511 * 109.47031 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47221 * 299.99522 * 16 14 12 20 20 C 1.40829 * 119.64178 * 0.02562 * 11 10 9 21 21 C 1.36431 * 119.81319 * 359.97438 * 20 11 10 22 22 H 1.09003 * 109.47030 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47210 * 300.00017 * 1 2 3 24 24 H 1.09001 * 109.47091 * 60.00016 * 1 2 3 25 25 H 1.00900 * 111.00486 * 180.02562 * 3 2 1 26 26 H 1.00902 * 111.00079 * 303.95566 * 3 2 1 27 27 H 1.09005 * 109.46782 * 304.99643 * 6 2 1 28 28 H 1.09002 * 109.47300 * 185.00187 * 6 2 1 29 29 H 1.08000 * 119.91135 * 359.97438 * 9 8 7 30 30 H 1.07999 * 120.09455 * 180.29138 * 10 9 8 31 31 H 0.97005 * 119.99879 * 180.02562 * 15 14 12 32 32 H 1.07999 * 120.09144 * 180.02562 * 20 11 10 33 33 H 1.08003 * 119.90891 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0208 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1293 6 6 2.0400 -0.7211 -1.2494 7 8 1.6619 0.0169 -2.4131 8 6 2.0390 -0.4904 -3.6137 9 6 1.7019 0.1818 -4.7863 10 6 2.0822 -0.3185 -5.9974 11 6 2.8126 -1.5210 -6.0600 12 6 3.2106 -2.0456 -7.3092 13 1 3.4017 -3.1034 -7.4146 14 6 3.3575 -1.1952 -8.4101 15 7 3.4751 0.0956 -8.2289 16 14 3.3858 -1.9021 -10.1390 17 1 2.1098 -2.6143 -10.4036 18 1 3.5503 -0.8006 -11.1215 19 1 4.5192 -2.8531 -10.2666 20 6 3.1439 -2.1975 -4.8700 21 6 2.7560 -1.6836 -3.6672 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.0283 1.4120 -0.0004 26 1 1.6442 1.9013 -0.7814 27 1 1.6054 -1.7197 -1.2953 28 1 3.1263 -0.7994 -1.2057 29 1 1.1416 1.1037 -4.7365 30 1 1.8241 0.2062 -6.9053 31 1 3.5766 0.6853 -8.9924 32 1 3.7041 -3.1199 -4.9095 33 1 3.0096 -2.2009 -2.7536 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402412592.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:32 Heat of formation + Delta-G solvation = -11.349178 kcal Electronic energy + Delta-G solvation = -16819.058857 eV Core-core repulsion = 14037.053757 eV Total energy + Delta-G solvation = -2782.005100 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.81781 -39.16114 -37.82368 -36.07789 -35.05718 -31.69955 -30.89921 -30.36310 -28.06308 -26.60776 -24.29529 -22.73867 -22.23411 -19.31803 -18.95800 -18.00553 -17.14377 -16.99202 -16.72526 -16.07560 -15.73854 -15.33120 -15.07925 -14.75868 -14.06596 -13.98157 -13.86643 -13.73323 -13.67604 -13.08502 -12.91082 -12.85535 -12.78689 -12.65975 -12.43275 -12.21928 -11.74221 -11.58425 -11.20104 -10.86560 -9.92971 -9.52901 -8.91745 -8.58775 -6.21884 0.97709 1.05457 1.40318 1.41388 1.51249 1.53193 1.55697 2.23147 2.25386 2.73917 2.99991 3.58853 3.65299 3.71326 3.78656 4.28283 4.34706 4.42312 4.45135 4.83743 4.89343 4.90978 5.08203 5.23757 5.27446 5.30218 5.57745 5.66862 5.89935 5.91870 6.07449 6.28189 6.29074 6.45240 6.55759 6.78431 6.96873 7.08998 8.37279 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.055891 B = 0.004330 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.852533 B = 6464.614503 C = 6705.463677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.233 3.767 3 N -0.824 5.824 4 C 0.246 3.754 5 N -0.454 5.454 6 C 0.035 3.965 7 O -0.312 6.312 8 C 0.006 3.994 9 C -0.123 4.123 10 C -0.154 4.154 11 C 0.057 3.943 12 C -0.503 4.503 13 H 0.073 0.927 14 C 0.037 3.963 15 N -0.828 5.828 16 Si 0.978 3.022 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.262 1.262 20 C -0.213 4.213 21 C -0.166 4.166 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.351 0.649 26 H 0.372 0.628 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.288 0.712 32 H 0.099 0.901 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 1.968 7.741 9.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.137 3.863 3 N -0.358 5.358 4 C -0.073 4.073 5 N -0.130 5.130 6 C -0.044 4.044 7 O -0.227 6.227 8 C -0.038 4.038 9 C -0.142 4.142 10 C -0.173 4.173 11 C 0.055 3.945 12 C -0.533 4.533 13 H 0.091 0.909 14 C -0.177 4.177 15 N -0.455 5.455 16 Si 0.799 3.201 17 H -0.186 1.186 18 H -0.192 1.192 19 H -0.187 1.187 20 C -0.232 4.232 21 C -0.185 4.185 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.165 0.835 26 H 0.190 0.810 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.400 1.646 9.756 10.828 hybrid contribution 0.803 -0.580 -2.065 2.290 sum -3.597 1.066 7.692 8.558 Atomic orbital electron populations 1.21873 0.88702 1.04104 1.04895 1.17974 0.97797 0.88034 0.82528 1.58894 1.15106 1.08909 1.52913 1.28778 0.92149 0.92494 0.93920 1.81218 1.09477 1.10108 1.12175 1.23318 0.99978 0.96403 0.84690 1.85679 1.75802 1.49695 1.11537 1.18490 1.05186 0.95822 0.84260 1.19996 1.03499 1.00413 0.90251 1.20925 1.01178 0.98941 0.96287 1.17937 0.90761 0.92665 0.93183 1.19702 1.43168 0.95734 0.94647 0.90912 1.26654 0.91364 0.94684 1.05010 1.69865 1.35536 1.05332 1.34732 0.85312 0.79875 0.78869 0.76011 1.18581 1.19237 1.18682 1.20769 1.07253 1.02795 0.92431 1.20682 1.02998 0.96858 0.97925 0.90523 0.89987 0.89359 0.83505 0.81005 0.91013 0.92141 0.86305 0.87177 0.90157 0.88298 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.59 71.98 0.62 -1.69 16 2 C 0.23 4.63 0.95 1.72 0.00 4.63 16 3 N -0.82 -15.07 8.80 -158.77 -1.40 -16.47 16 4 C 0.25 5.73 14.15 89.44 1.27 7.00 16 5 N -0.45 -12.63 18.54 20.00 0.37 -12.26 16 6 C 0.04 0.86 3.72 71.98 0.27 1.13 16 7 O -0.31 -9.54 8.98 -90.01 -0.81 -10.35 16 8 C 0.01 0.24 6.71 22.79 0.15 0.40 16 9 C -0.12 -5.35 9.92 22.11 0.22 -5.13 16 10 C -0.15 -7.73 8.64 22.49 0.19 -7.53 16 11 C 0.06 2.97 5.57 -21.28 -0.12 2.85 16 12 C -0.50 -26.60 9.04 23.40 0.21 -26.39 16 13 H 0.07 3.73 7.91 -2.91 -0.02 3.70 16 14 C 0.04 1.84 5.13 85.23 0.44 2.28 16 15 N -0.83 -42.22 10.96 21.82 0.24 -41.98 16 16 Si 0.98 37.44 29.60 68.60 2.03 39.47 16 17 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 18 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 C -0.21 -10.04 9.74 22.48 0.22 -9.82 16 21 C -0.17 -6.77 8.96 22.11 0.20 -6.57 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 24 H 0.09 1.51 7.82 -2.39 -0.02 1.50 16 25 H 0.35 6.13 8.98 -89.69 -0.81 5.32 16 26 H 0.37 6.58 8.38 -89.69 -0.75 5.83 16 27 H 0.07 1.70 7.63 -2.38 -0.02 1.68 16 28 H 0.06 1.49 7.66 -2.39 -0.02 1.47 16 29 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 30 H 0.11 5.79 6.16 -2.91 -0.02 5.77 16 31 H 0.29 13.30 8.30 -92.70 -0.77 12.53 16 32 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.12 4.18 6.27 -2.91 -0.02 4.17 16 Total: -1.00 -57.99 290.85 3.70 -54.29 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.41 Total: 26.15 kcal Atomic # 6 Polarization: -42.53 SS G_CDS: 3.67 Total: -38.86 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -0.79 Total: -70.70 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.81 Total: -10.35 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -57.99 3.70 -54.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402412592.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.941 kcal (2) G-P(sol) polarization free energy of solvation -57.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds