Wall clock time and date at job start Mon Mar 30 2020 04:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47187 * 2 1 4 4 S 1.81404 * 109.47494 * 239.99889 * 2 1 3 5 5 N 1.49352 * 108.32859 * 49.98075 * 4 2 1 6 6 O 1.42100 * 114.65149 * 171.08937 * 4 2 1 7 7 N 1.65602 * 108.33085 * 292.19396 * 4 2 1 8 8 C 1.46500 * 119.99896 * 174.86844 * 7 4 2 9 9 C 1.50695 * 109.47185 * 94.99871 * 8 7 4 10 10 H 1.08000 * 119.99941 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00183 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00205 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99777 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.46823 * 89.99863 * 13 11 9 15 15 H 1.48502 * 109.47241 * 209.99665 * 13 11 9 16 16 H 1.48500 * 109.47521 * 329.99893 * 13 11 9 17 17 C 1.46501 * 119.99982 * 354.86720 * 7 4 2 18 18 C 1.53001 * 117.50032 * 187.70399 * 17 7 4 19 19 C 1.53003 * 60.00188 * 252.51104 * 18 17 7 20 20 H 1.09000 * 109.47090 * 60.00104 * 1 2 3 21 21 H 1.09003 * 109.46942 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46882 * 300.00065 * 1 2 3 23 23 H 1.09000 * 109.47090 * 119.99895 * 2 1 3 24 24 H 1.08997 * 109.47534 * 298.39437 * 3 2 1 25 25 H 1.09001 * 109.47123 * 58.39678 * 3 2 1 26 26 H 1.09001 * 109.47297 * 178.39358 * 3 2 1 27 27 H 0.96996 * 119.99968 * 304.93197 * 5 4 2 28 28 H 1.09007 * 109.46796 * 215.00168 * 8 7 4 29 29 H 1.08995 * 109.47199 * 334.99870 * 8 7 4 30 30 H 0.96999 * 120.00371 * 180.02562 * 12 11 9 31 31 H 1.08995 * 115.55118 * 333.41427 * 17 7 4 32 32 H 1.09004 * 117.49301 * 0.02562 * 18 17 7 33 33 H 1.08993 * 117.50191 * 145.02165 * 18 17 7 34 34 H 1.08990 * 117.49615 * 252.50780 * 19 18 17 35 35 H 1.09000 * 117.49595 * 107.48766 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1348 -0.8552 -1.4811 5 7 1.4318 -0.2883 -2.6707 6 8 3.5353 -0.7486 -1.6967 7 7 1.7486 -2.4602 -1.3500 8 6 2.0202 -3.3722 -2.4638 9 6 3.3515 -4.0448 -2.2492 10 1 3.9366 -3.8161 -1.3707 11 6 3.8221 -4.9530 -3.1737 12 7 4.9838 -5.5403 -2.9861 13 14 2.8097 -5.3491 -4.6928 14 1 3.1775 -4.4177 -5.7894 15 1 3.0808 -6.7459 -5.1179 16 1 1.3662 -5.1985 -4.3787 17 6 1.1354 -2.9679 -0.1202 18 6 0.9677 -4.4830 0.0122 19 6 -0.2552 -3.5963 -0.2314 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.7004 1.9480 -0.9040 25 1 1.6534 1.9645 0.8753 26 1 3.1296 1.4426 0.0288 27 1 0.4624 -0.2763 -2.7010 28 1 1.2356 -4.1273 -2.5147 29 1 2.0437 -2.8094 -3.3969 30 1 5.3151 -6.1789 -3.6367 31 1 1.3624 -2.4054 0.7853 32 1 1.3140 -5.1019 -0.8155 33 1 1.0845 -4.9174 1.0050 34 1 -0.9428 -3.4475 0.6010 35 1 -0.7138 -3.6320 -1.2197 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404704058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:34 Heat of formation + Delta-G solvation = 29.769199 kcal Electronic energy + Delta-G solvation = -17170.103288 eV Core-core repulsion = 14525.325165 eV Total energy + Delta-G solvation = -2644.778122 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -37.80631 -35.63077 -34.98367 -33.34374 -31.88149 -31.41414 -27.91911 -27.18487 -23.13429 -22.03290 -21.85320 -20.57360 -18.03969 -17.40927 -16.82139 -16.38623 -15.24534 -14.83869 -14.55596 -14.34247 -13.86001 -13.25295 -12.77750 -12.49970 -12.43275 -12.17273 -11.89337 -11.62906 -11.47598 -11.39292 -11.20107 -10.97116 -10.90563 -10.72329 -10.36160 -10.05640 -9.96240 -9.49127 -9.20351 -8.79258 -8.56433 -7.86996 -6.05338 -4.04088 0.54563 3.27062 3.32166 3.36675 3.39229 4.06972 4.21314 4.39394 4.40802 4.60158 4.97736 5.01180 5.16025 5.20269 5.25737 5.34205 5.39927 5.49807 5.54894 5.60617 5.72394 5.89682 5.91593 5.99790 6.29586 6.42060 6.66352 6.81609 6.99428 7.33698 7.59354 7.74710 8.52280 9.03259 9.53669 11.08101 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027175 B = 0.009221 C = 0.008085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.101743 B = 3035.857488 C = 3462.560927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.598 4.598 3 C -0.130 4.130 4 S 2.515 3.485 5 N -1.244 6.244 6 O -0.916 6.916 7 N -0.960 5.960 8 C 0.229 3.771 9 C -0.529 4.529 10 H 0.080 0.920 11 C 0.072 3.928 12 N -0.894 5.894 13 Si 0.867 3.133 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.265 1.265 17 C 0.074 3.926 18 C -0.164 4.164 19 C -0.206 4.206 20 H 0.068 0.932 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.120 0.880 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.375 0.625 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.264 0.736 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.946 7.964 8.488 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.710 4.710 3 C -0.189 4.189 4 S 2.604 3.396 5 N -1.063 6.063 6 O -0.896 6.896 7 N -0.790 5.790 8 C 0.106 3.894 9 C -0.568 4.568 10 H 0.098 0.902 11 C -0.130 4.130 12 N -0.533 5.533 13 Si 0.694 3.306 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.190 1.190 17 C -0.035 4.035 18 C -0.203 4.203 19 C -0.246 4.246 20 H 0.087 0.913 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.138 0.862 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.196 0.804 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.420 8.161 7.694 16.007 hybrid contribution -1.303 -0.556 0.106 1.421 sum -12.723 7.605 7.799 16.750 Atomic orbital electron populations 1.21676 0.90620 1.03723 1.03858 1.30450 1.06411 1.09938 1.24186 1.21465 1.01885 0.91882 1.03622 1.10592 0.80328 0.74406 0.74293 1.72914 1.25724 1.72594 1.35029 1.93516 1.29061 1.85260 1.81790 1.57181 1.75466 1.25110 1.21287 1.19487 0.97483 0.89068 0.83382 1.21432 1.02550 1.23296 1.09495 0.90156 1.24872 0.94834 0.95723 0.97589 1.69895 1.18715 1.28489 1.36160 0.87000 0.81147 0.78076 0.84425 1.19743 1.20956 1.18961 1.21344 0.96298 0.97570 0.88304 1.23269 0.99923 0.93143 1.03966 1.23453 0.91576 1.06677 1.02911 0.91303 0.90720 0.90895 0.86157 0.91022 0.91058 0.91250 0.80431 0.94608 0.94810 0.92590 0.86763 0.86231 0.88959 0.88929 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.82 37.16 0.33 -1.01 16 2 C -0.60 -7.38 2.65 -26.73 -0.07 -7.45 16 3 C -0.13 -1.52 9.20 37.16 0.34 -1.17 16 4 S 2.51 46.54 4.17 -107.50 -0.45 46.09 16 5 N -1.24 -23.26 13.72 60.35 0.83 -22.44 16 6 O -0.92 -22.74 18.16 -35.23 -0.64 -23.37 16 7 N -0.96 -18.46 3.16 -108.57 -0.34 -18.80 16 8 C 0.23 5.42 3.84 -5.20 -0.02 5.40 16 9 C -0.53 -15.05 9.35 -34.44 -0.32 -15.37 16 10 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.89 -27.72 13.96 55.43 0.77 -26.94 16 13 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 14 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 17 C 0.07 1.12 4.67 -67.93 -0.32 0.80 16 18 C -0.16 -2.55 9.63 -26.73 -0.26 -2.81 16 19 C -0.21 -2.61 9.25 -26.73 -0.25 -2.86 16 20 H 0.07 0.62 7.25 -51.93 -0.38 0.24 16 21 H 0.07 0.67 5.61 -51.93 -0.29 0.37 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.12 1.30 6.97 -51.92 -0.36 0.94 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.37 5.68 7.89 -21.58 -0.17 5.51 16 28 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 29 H 0.03 0.85 7.27 -51.93 -0.38 0.47 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.11 1.37 6.40 -51.93 -0.33 1.04 16 32 H 0.12 2.27 6.15 -51.93 -0.32 1.95 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 290.78 15.07 4.38 4.38 Total: -1.00 -35.75 290.78 -5.85 -41.60 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.07 Total: 5.18 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -0.66 Total: -22.47 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: 1.26 Total: -68.18 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.64 Total: -23.37 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 46.54 SS G_CDS: -0.45 Total: 46.09 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.75 -5.85 -41.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404704058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.370 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds