Wall clock time and date at job start Mon Mar 30 2020 04:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47187 * 2 1 4 4 S 1.81404 * 109.47494 * 239.99889 * 2 1 3 5 5 N 1.49352 * 108.32859 * 49.98075 * 4 2 1 6 6 O 1.42100 * 114.65149 * 171.08937 * 4 2 1 7 7 N 1.65602 * 108.33085 * 292.19396 * 4 2 1 8 8 C 1.46500 * 119.99896 * 174.86844 * 7 4 2 9 9 C 1.50695 * 109.47185 * 94.99871 * 8 7 4 10 10 H 1.08000 * 119.99941 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00183 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00205 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99777 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.46823 * 89.99863 * 13 11 9 15 15 H 1.48502 * 109.47241 * 209.99665 * 13 11 9 16 16 H 1.48500 * 109.47521 * 329.99893 * 13 11 9 17 17 C 1.46501 * 119.99982 * 354.86720 * 7 4 2 18 18 C 1.53001 * 117.50032 * 187.70399 * 17 7 4 19 19 C 1.53003 * 60.00188 * 252.51104 * 18 17 7 20 20 H 1.09000 * 109.47090 * 60.00104 * 1 2 3 21 21 H 1.09003 * 109.46942 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46882 * 300.00065 * 1 2 3 23 23 H 1.09000 * 109.47090 * 119.99895 * 2 1 3 24 24 H 1.08997 * 109.47534 * 298.39437 * 3 2 1 25 25 H 1.09001 * 109.47123 * 58.39678 * 3 2 1 26 26 H 1.09001 * 109.47297 * 178.39358 * 3 2 1 27 27 H 0.96996 * 119.99968 * 304.93197 * 5 4 2 28 28 H 1.09007 * 109.46796 * 215.00168 * 8 7 4 29 29 H 1.08995 * 109.47199 * 334.99870 * 8 7 4 30 30 H 0.96999 * 120.00371 * 180.02562 * 12 11 9 31 31 H 1.08995 * 115.55118 * 333.41427 * 17 7 4 32 32 H 1.09004 * 117.49301 * 0.02562 * 18 17 7 33 33 H 1.08993 * 117.50191 * 145.02165 * 18 17 7 34 34 H 1.08990 * 117.49615 * 252.50780 * 19 18 17 35 35 H 1.09000 * 117.49595 * 107.48766 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1348 -0.8552 -1.4811 5 7 1.4318 -0.2883 -2.6707 6 8 3.5353 -0.7486 -1.6967 7 7 1.7486 -2.4602 -1.3500 8 6 2.0202 -3.3722 -2.4638 9 6 3.3515 -4.0448 -2.2492 10 1 3.9366 -3.8161 -1.3707 11 6 3.8221 -4.9530 -3.1737 12 7 4.9838 -5.5403 -2.9861 13 14 2.8097 -5.3491 -4.6928 14 1 3.1775 -4.4177 -5.7894 15 1 3.0808 -6.7459 -5.1179 16 1 1.3662 -5.1985 -4.3787 17 6 1.1354 -2.9679 -0.1202 18 6 0.9677 -4.4830 0.0122 19 6 -0.2552 -3.5963 -0.2314 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.7004 1.9480 -0.9040 25 1 1.6534 1.9645 0.8753 26 1 3.1296 1.4426 0.0288 27 1 0.4624 -0.2763 -2.7010 28 1 1.2356 -4.1273 -2.5147 29 1 2.0437 -2.8094 -3.3969 30 1 5.3151 -6.1789 -3.6367 31 1 1.3624 -2.4054 0.7853 32 1 1.3140 -5.1019 -0.8155 33 1 1.0845 -4.9174 1.0050 34 1 -0.9428 -3.4475 0.6010 35 1 -0.7138 -3.6320 -1.2197 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404704058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:34 Heat of formation + Delta-G solvation = 0.678157 kcal Electronic energy + Delta-G solvation = -17171.364770 eV Core-core repulsion = 14525.325165 eV Total energy + Delta-G solvation = -2646.039605 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.09959 -37.25917 -36.05119 -35.17395 -33.69037 -32.82288 -29.69447 -28.15083 -24.84235 -23.18474 -22.98450 -22.00752 -19.45721 -19.05980 -18.73881 -17.71505 -16.64122 -16.32804 -16.05222 -15.67736 -15.16392 -14.69045 -14.22146 -13.91337 -13.69037 -13.60899 -13.20182 -13.10970 -12.87733 -12.63531 -12.58105 -12.34082 -12.32899 -12.13840 -11.87212 -11.79611 -11.48652 -11.20290 -10.82164 -10.58715 -10.06823 -9.36465 -8.31510 -6.35168 -0.81409 1.29556 1.34561 1.41490 1.95719 2.30191 2.82238 2.99955 3.03913 3.29065 3.60304 3.78488 3.94954 4.00354 4.22673 4.24978 4.29440 4.64661 4.67183 4.77892 4.80743 4.87247 4.93181 4.95974 5.10562 5.20790 5.24569 5.35150 5.47439 5.48470 5.85912 6.28204 6.58070 6.69196 7.26525 8.86078 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027175 B = 0.009221 C = 0.008085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.101743 B = 3035.857488 C = 3462.560927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.551 4.551 3 C -0.141 4.141 4 S 2.496 3.504 5 N -1.282 6.282 6 O -1.000 7.000 7 N -0.966 5.966 8 C 0.240 3.760 9 C -0.529 4.529 10 H 0.030 0.970 11 C 0.006 3.994 12 N -0.947 5.947 13 Si 0.935 3.065 14 H -0.276 1.276 15 H -0.274 1.274 16 H -0.233 1.233 17 C 0.049 3.951 18 C -0.193 4.193 19 C -0.165 4.165 20 H 0.074 0.926 21 H 0.085 0.915 22 H 0.109 0.891 23 H 0.146 0.854 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.052 0.948 27 H 0.389 0.611 28 H 0.053 0.947 29 H 0.019 0.981 30 H 0.267 0.733 31 H 0.150 0.850 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.916 9.115 10.216 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.671 4.671 3 C -0.200 4.200 4 S 2.593 3.407 5 N -1.101 6.101 6 O -0.981 6.981 7 N -0.795 5.795 8 C 0.115 3.885 9 C -0.568 4.568 10 H 0.048 0.952 11 C -0.192 4.192 12 N -0.587 5.587 13 Si 0.758 3.242 14 H -0.202 1.202 15 H -0.199 1.199 16 H -0.156 1.156 17 C -0.059 4.059 18 C -0.232 4.232 19 C -0.204 4.204 20 H 0.093 0.907 21 H 0.104 0.896 22 H 0.128 0.872 23 H 0.164 0.836 24 H 0.089 0.911 25 H 0.132 0.868 26 H 0.071 0.929 27 H 0.212 0.788 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.094 0.906 33 H 0.131 0.869 34 H 0.157 0.843 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.415 9.278 9.377 20.289 hybrid contribution -0.062 -0.802 -0.197 0.828 sum -15.477 8.476 9.179 19.891 Atomic orbital electron populations 1.21877 0.87261 1.05269 1.05960 1.30058 1.08783 1.09021 1.19225 1.21672 1.01235 0.91458 1.05617 1.10490 0.78726 0.74310 0.77131 1.72853 1.26905 1.71213 1.39146 1.93429 1.33694 1.86136 1.84848 1.57126 1.75557 1.25126 1.21708 1.19073 0.95079 0.89666 0.84706 1.21684 1.04246 1.23285 1.07632 0.95173 1.25880 0.96154 0.95688 1.01438 1.70063 1.21024 1.29812 1.37832 0.85903 0.81079 0.77948 0.79299 1.20159 1.19890 1.15563 1.21918 0.98477 0.97602 0.87870 1.23242 1.03201 0.93142 1.03578 1.23541 0.90373 1.02080 1.04406 0.90738 0.89582 0.87199 0.83634 0.91104 0.86761 0.92867 0.78791 0.92929 0.96277 0.92453 0.83242 0.90561 0.86945 0.84303 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.82 71.98 0.63 -1.29 16 2 C -0.55 -11.58 2.65 30.59 0.08 -11.50 16 3 C -0.14 -2.83 9.20 71.98 0.66 -2.17 16 4 S 2.50 92.41 4.17 -56.49 -0.24 92.17 16 5 N -1.28 -47.94 13.72 37.02 0.51 -47.43 16 6 O -1.00 -52.55 18.16 -148.98 -2.71 -55.26 16 7 N -0.97 -36.93 3.16 -497.41 -1.57 -38.50 16 8 C 0.24 11.57 3.84 85.63 0.33 11.90 16 9 C -0.53 -31.76 9.35 25.60 0.24 -31.53 16 10 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 11 C 0.01 0.36 5.47 84.65 0.46 0.82 16 12 N -0.95 -61.75 13.96 21.45 0.30 -61.45 16 13 Si 0.94 45.23 27.47 68.60 1.88 47.11 16 14 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 15 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.23 -9.94 6.54 99.48 0.65 -9.28 16 17 C 0.05 1.35 4.67 44.99 0.21 1.56 16 18 C -0.19 -5.72 9.63 30.60 0.29 -5.42 16 19 C -0.16 -3.46 9.25 30.60 0.28 -3.18 16 20 H 0.07 0.97 7.25 -2.39 -0.02 0.95 16 21 H 0.09 1.00 5.61 -2.39 -0.01 0.99 16 22 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.15 2.45 6.97 -2.39 -0.02 2.43 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.39 11.35 7.89 -104.95 -0.83 10.53 16 28 H 0.05 2.34 5.64 -2.38 -0.01 2.33 16 29 H 0.02 0.98 7.27 -2.39 -0.02 0.97 16 30 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 31 H 0.15 2.97 6.40 -2.39 -0.02 2.96 16 32 H 0.08 2.95 6.15 -2.38 -0.01 2.94 16 33 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 2.05 8.12 -2.39 -0.02 2.03 16 Total: -1.00 -86.85 290.78 1.57 -85.28 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.20 Total: 18.88 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 3.20 Total: -40.80 kcal Atomic # 7 Polarization: -146.62 SS G_CDS: -0.77 Total: -147.38 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -2.71 Total: -55.26 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.11 kcal Atomic # 16 Polarization: 92.41 SS G_CDS: -0.24 Total: 92.17 kcal Total: -86.85 1.57 -85.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404704058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.955 kcal (2) G-P(sol) polarization free energy of solvation -86.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds