Wall clock time and date at job start Mon Mar 30 2020 04:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21278 * 119.99712 * 2 1 4 4 N 1.34772 * 120.00277 * 179.72142 * 2 1 3 5 5 C 1.47041 * 126.41697 * 354.58410 * 4 2 1 6 6 H 1.08997 * 110.33188 * 298.86233 * 5 4 2 7 7 C 1.50703 * 110.32860 * 61.09284 * 5 4 2 8 8 H 1.07990 * 120.00140 * 359.97438 * 7 5 4 9 9 C 1.37884 * 119.99573 * 179.97438 * 7 5 4 10 10 N 1.31517 * 120.00002 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 119.99846 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47080 * 89.99848 * 11 9 7 13 13 H 1.48500 * 109.46883 * 209.99932 * 11 9 7 14 14 H 1.48499 * 109.47093 * 330.00115 * 11 9 7 15 15 C 1.51031 * 105.01540 * 179.97438 * 5 4 2 16 16 C 1.37849 * 132.41202 * 180.02562 * 15 5 4 17 17 C 1.38349 * 119.97567 * 179.97438 * 16 15 5 18 18 C 1.38309 * 119.91267 * 359.97438 * 17 16 15 19 19 C 1.37960 * 120.28657 * 359.97393 * 18 17 16 20 20 C 1.38845 * 107.03461 * 359.97438 * 15 5 4 21 21 N 1.39398 * 109.88164 * 359.75573 * 20 15 5 22 22 C 1.46500 * 124.54987 * 180.24916 * 21 20 15 23 23 H 1.08996 * 109.46899 * 95.31626 * 1 2 3 24 24 H 1.09000 * 109.47017 * 215.31019 * 1 2 3 25 25 H 1.08998 * 109.47488 * 335.30916 * 1 2 3 26 26 H 0.97002 * 119.99734 * 180.02562 * 10 9 7 27 27 H 1.08007 * 120.01501 * 359.94667 * 16 15 5 28 28 H 1.08003 * 120.04426 * 179.97438 * 17 16 15 29 29 H 1.07996 * 119.85045 * 179.97438 * 18 17 16 30 30 H 1.07997 * 119.95291 * 180.02562 * 19 18 17 31 31 H 1.08999 * 109.47055 * 272.18993 * 22 21 20 32 32 H 1.09004 * 109.46765 * 32.18980 * 22 21 20 33 33 H 1.08995 * 109.47068 * 152.18549 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0057 5 6 1.5973 -2.5115 0.1239 6 1 1.0691 -2.6131 1.0719 7 6 0.6639 -2.7803 -1.0283 8 1 0.5104 -2.0263 -1.7861 9 6 0.0059 -3.9889 -1.1150 10 7 0.1932 -4.9072 -0.1925 11 14 -1.1517 -4.3217 -2.5428 12 1 -0.3934 -4.9366 -3.6618 13 1 -2.2253 -5.2491 -2.1038 14 1 -1.7566 -3.0441 -2.9979 15 6 2.7755 -3.4552 0.0758 16 6 2.8696 -4.8290 0.1392 17 6 4.1083 -5.4411 0.0684 18 6 5.2505 -4.6729 -0.0664 19 6 5.1605 -3.2978 -0.1312 20 6 3.9161 -2.6752 -0.0596 21 7 3.5655 -1.3268 -0.1069 22 6 4.5199 -0.2247 -0.2506 23 1 -0.3633 -0.0952 -1.0232 24 1 -0.3633 -0.8386 0.5940 25 1 -0.3634 0.9337 0.4293 26 1 -0.2694 -5.7576 -0.2537 27 1 1.9766 -5.4274 0.2445 28 1 4.1833 -6.5174 0.1184 29 1 6.2170 -5.1517 -0.1211 30 1 6.0558 -2.7032 -0.2369 31 1 4.8727 0.0812 0.7343 32 1 5.3662 -0.5534 -0.8538 33 1 4.0309 0.6179 -0.7393 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584621335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:44 Heat of formation + Delta-G solvation = 55.010059 kcal Electronic energy + Delta-G solvation = -18233.886306 eV Core-core repulsion = 15454.758759 eV Total energy + Delta-G solvation = -2779.127548 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.10391 -38.05954 -35.71096 -33.95274 -31.93537 -30.35106 -29.34317 -28.45433 -26.95512 -24.93326 -23.36804 -20.85758 -20.44837 -19.02141 -16.97301 -16.35515 -16.21666 -15.40430 -14.95981 -14.64838 -13.90753 -13.65495 -13.51831 -13.08323 -12.81406 -12.75217 -12.29599 -12.00257 -11.82434 -11.61438 -11.54772 -11.11426 -11.04768 -10.76883 -10.42033 -10.23448 -9.95666 -9.50025 -9.17845 -8.73853 -8.26769 -7.73814 -6.42163 -6.01156 -4.43374 2.37628 2.44350 2.63078 3.15400 3.23039 3.24654 3.31362 4.17791 4.61352 4.80789 4.94544 5.33503 5.56097 5.64052 5.84814 5.88184 5.90877 6.04827 6.09305 6.14879 6.30169 6.41079 6.49883 6.53420 6.96573 7.05329 7.12757 7.36042 7.55398 7.60614 7.76158 7.84258 8.00829 8.18383 8.38547 8.66069 9.08023 9.22859 10.68605 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.013078 C = 0.007875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.790575 B = 2140.427304 C = 3554.728573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.525 3.475 3 O -0.584 6.584 4 N -0.397 5.397 5 C 0.303 3.697 6 H 0.060 0.940 7 C -0.522 4.522 8 H 0.068 0.932 9 C 0.073 3.927 10 N -0.878 5.878 11 Si 0.906 3.094 12 H -0.278 1.278 13 H -0.282 1.282 14 H -0.272 1.272 15 C -0.119 4.119 16 C -0.046 4.046 17 C -0.190 4.190 18 C -0.095 4.095 19 C -0.189 4.189 20 C 0.171 3.829 21 N -0.450 5.450 22 C 0.123 3.877 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.269 0.731 27 H 0.172 0.828 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 0.890 0.633 3.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.315 3.685 3 O -0.466 6.466 4 N -0.215 5.215 5 C 0.203 3.797 6 H 0.077 0.923 7 C -0.560 4.560 8 H 0.086 0.914 9 C -0.130 4.130 10 N -0.516 5.516 11 Si 0.733 3.267 12 H -0.204 1.204 13 H -0.208 1.208 14 H -0.196 1.196 15 C -0.124 4.124 16 C -0.065 4.065 17 C -0.211 4.211 18 C -0.114 4.114 19 C -0.213 4.213 20 C 0.070 3.930 21 N -0.250 5.250 22 C -0.020 4.020 23 H 0.113 0.887 24 H 0.111 0.889 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.189 0.811 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.493 1.608 0.676 3.905 hybrid contribution -0.297 -0.273 -0.891 0.978 sum 3.197 1.335 -0.215 3.471 Atomic orbital electron populations 1.21709 0.89557 1.03931 1.05269 1.20547 0.90387 0.80500 0.77047 1.90584 1.70414 1.30979 1.54619 1.48422 0.94204 1.09054 1.69810 1.18247 0.89249 0.73519 0.98711 0.92291 1.21268 1.24455 1.01570 1.08740 0.91435 1.24858 0.96519 0.95298 0.96357 1.69607 1.41585 1.06667 1.33709 0.86353 0.80050 0.78483 0.81825 1.20386 1.20774 1.19635 1.20390 0.92962 0.94349 1.04698 1.21682 0.98690 0.93636 0.92474 1.20983 0.92945 0.98780 1.08346 1.20545 0.97847 0.92575 1.00457 1.19787 0.93574 0.94401 1.13533 1.18214 0.95166 0.82352 0.97278 1.45842 0.95196 1.03216 1.80715 1.21622 0.90621 0.89016 1.00700 0.88716 0.88892 0.90154 0.92093 0.81101 0.87351 0.87310 0.87781 0.94037 0.91878 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.81 36.01 0.32 -2.22 16 2 C 0.53 11.39 7.89 -10.99 -0.09 11.30 16 3 O -0.58 -13.55 15.02 5.56 0.08 -13.47 16 4 N -0.40 -9.15 3.68 -55.55 -0.20 -9.36 16 5 C 0.30 7.29 2.51 -69.78 -0.18 7.11 16 6 H 0.06 1.48 8.05 -51.93 -0.42 1.07 16 7 C -0.52 -12.86 7.38 -34.44 -0.25 -13.12 16 8 H 0.07 1.68 7.16 -52.49 -0.38 1.31 16 9 C 0.07 1.76 5.27 -17.82 -0.09 1.67 16 10 N -0.88 -21.47 9.52 55.43 0.53 -20.94 16 11 Si 0.91 19.29 29.54 -169.99 -5.02 14.26 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 15 C -0.12 -2.82 5.48 -104.38 -0.57 -3.39 16 16 C -0.05 -1.03 9.23 -39.68 -0.37 -1.40 16 17 C -0.19 -3.69 10.06 -39.51 -0.40 -4.09 16 18 C -0.10 -1.72 10.02 -39.66 -0.40 -2.12 16 19 C -0.19 -3.64 9.79 -39.28 -0.38 -4.03 16 20 C 0.17 3.80 6.76 -83.79 -0.57 3.24 16 21 N -0.45 -9.99 4.09 -65.38 -0.27 -10.25 16 22 C 0.12 2.26 10.37 59.85 0.62 2.89 16 23 H 0.09 1.61 7.71 -51.93 -0.40 1.21 16 24 H 0.09 1.64 7.16 -51.93 -0.37 1.27 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 27 H 0.17 4.03 5.00 -52.48 -0.26 3.77 16 28 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.10 1.74 7.84 -52.49 -0.41 1.32 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.00 7.82 -51.93 -0.41 0.59 16 33 H 0.09 1.70 6.16 -51.93 -0.32 1.38 16 LS Contribution 274.36 15.07 4.13 4.13 Total: -1.00 -27.93 274.36 -6.90 -34.83 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -3.79 Total: 4.94 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.36 Total: -4.15 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.06 Total: -40.55 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.93 -6.90 -34.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584621335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.838 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds