Wall clock time and date at job start Mon Mar 30 2020 04:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21278 * 119.99712 * 2 1 4 4 N 1.34772 * 120.00277 * 179.72142 * 2 1 3 5 5 C 1.47041 * 126.41697 * 354.58410 * 4 2 1 6 6 H 1.08997 * 110.33188 * 298.86233 * 5 4 2 7 7 C 1.50703 * 110.32860 * 61.09284 * 5 4 2 8 8 H 1.07990 * 120.00140 * 359.97438 * 7 5 4 9 9 C 1.37884 * 119.99573 * 179.97438 * 7 5 4 10 10 N 1.31517 * 120.00002 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 119.99846 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47080 * 89.99848 * 11 9 7 13 13 H 1.48500 * 109.46883 * 209.99932 * 11 9 7 14 14 H 1.48499 * 109.47093 * 330.00115 * 11 9 7 15 15 C 1.51031 * 105.01540 * 179.97438 * 5 4 2 16 16 C 1.37849 * 132.41202 * 180.02562 * 15 5 4 17 17 C 1.38349 * 119.97567 * 179.97438 * 16 15 5 18 18 C 1.38309 * 119.91267 * 359.97438 * 17 16 15 19 19 C 1.37960 * 120.28657 * 359.97393 * 18 17 16 20 20 C 1.38845 * 107.03461 * 359.97438 * 15 5 4 21 21 N 1.39398 * 109.88164 * 359.75573 * 20 15 5 22 22 C 1.46500 * 124.54987 * 180.24916 * 21 20 15 23 23 H 1.08996 * 109.46899 * 95.31626 * 1 2 3 24 24 H 1.09000 * 109.47017 * 215.31019 * 1 2 3 25 25 H 1.08998 * 109.47488 * 335.30916 * 1 2 3 26 26 H 0.97002 * 119.99734 * 180.02562 * 10 9 7 27 27 H 1.08007 * 120.01501 * 359.94667 * 16 15 5 28 28 H 1.08003 * 120.04426 * 179.97438 * 17 16 15 29 29 H 1.07996 * 119.85045 * 179.97438 * 18 17 16 30 30 H 1.07997 * 119.95291 * 180.02562 * 19 18 17 31 31 H 1.08999 * 109.47055 * 272.18993 * 22 21 20 32 32 H 1.09004 * 109.46765 * 32.18980 * 22 21 20 33 33 H 1.08995 * 109.47068 * 152.18549 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0057 5 6 1.5973 -2.5115 0.1239 6 1 1.0691 -2.6131 1.0719 7 6 0.6639 -2.7803 -1.0283 8 1 0.5104 -2.0263 -1.7861 9 6 0.0059 -3.9889 -1.1150 10 7 0.1932 -4.9072 -0.1925 11 14 -1.1517 -4.3217 -2.5428 12 1 -0.3934 -4.9366 -3.6618 13 1 -2.2253 -5.2491 -2.1038 14 1 -1.7566 -3.0441 -2.9979 15 6 2.7755 -3.4552 0.0758 16 6 2.8696 -4.8290 0.1392 17 6 4.1083 -5.4411 0.0684 18 6 5.2505 -4.6729 -0.0664 19 6 5.1605 -3.2978 -0.1312 20 6 3.9161 -2.6752 -0.0596 21 7 3.5655 -1.3268 -0.1069 22 6 4.5199 -0.2247 -0.2506 23 1 -0.3633 -0.0952 -1.0232 24 1 -0.3633 -0.8386 0.5940 25 1 -0.3634 0.9337 0.4293 26 1 -0.2694 -5.7576 -0.2537 27 1 1.9766 -5.4274 0.2445 28 1 4.1833 -6.5174 0.1184 29 1 6.2170 -5.1517 -0.1211 30 1 6.0558 -2.7032 -0.2369 31 1 4.8727 0.0812 0.7343 32 1 5.3662 -0.5534 -0.8538 33 1 4.0309 0.6179 -0.7393 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584621335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:44 Heat of formation + Delta-G solvation = 39.404872 kcal Electronic energy + Delta-G solvation = -18234.562998 eV Core-core repulsion = 15454.758759 eV Total energy + Delta-G solvation = -2779.804240 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.76323 -39.72493 -37.33349 -35.69963 -33.66947 -31.97082 -30.90410 -29.97948 -28.70449 -26.51016 -25.11780 -22.45967 -22.07321 -20.68011 -18.79573 -18.03847 -17.83641 -16.99186 -16.66559 -16.37588 -15.53691 -15.22822 -15.09823 -14.66596 -14.51144 -14.35086 -13.90864 -13.55281 -13.25878 -13.24133 -13.06933 -12.80482 -12.73189 -12.33247 -12.08961 -11.98730 -11.60087 -11.19139 -10.87715 -10.57884 -9.92242 -9.35401 -8.22501 -7.69603 -6.32729 0.79710 0.85560 1.04106 1.45304 1.48912 1.56368 1.61927 2.40594 2.98664 3.06712 3.23812 3.75113 4.06069 4.22193 4.36082 4.44791 4.50982 4.58191 4.65707 4.69247 4.73161 4.85982 4.97681 5.05382 5.16446 5.44040 5.56981 5.70366 5.82316 5.92924 6.02424 6.16069 6.31582 6.56165 6.63316 6.89607 7.35149 7.39251 8.84718 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.013078 C = 0.007875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.790575 B = 2140.427304 C = 3554.728573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.515 3.485 3 O -0.603 6.603 4 N -0.408 5.408 5 C 0.307 3.693 6 H 0.033 0.967 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.039 3.961 10 N -0.891 5.891 11 Si 0.960 3.040 12 H -0.284 1.284 13 H -0.276 1.276 14 H -0.268 1.268 15 C -0.157 4.157 16 C -0.068 4.068 17 C -0.190 4.190 18 C -0.083 4.083 19 C -0.185 4.185 20 C 0.150 3.850 21 N -0.463 5.463 22 C 0.123 3.877 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.271 0.729 27 H 0.155 0.845 28 H 0.135 0.865 29 H 0.155 0.845 30 H 0.135 0.865 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 0.332 0.028 4.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.306 3.694 3 O -0.486 6.486 4 N -0.225 5.225 5 C 0.206 3.794 6 H 0.050 0.950 7 C -0.572 4.572 8 H 0.076 0.924 9 C -0.163 4.163 10 N -0.529 5.529 11 Si 0.786 3.214 12 H -0.210 1.210 13 H -0.201 1.201 14 H -0.192 1.192 15 C -0.162 4.162 16 C -0.087 4.087 17 C -0.210 4.210 18 C -0.102 4.102 19 C -0.208 4.208 20 C 0.049 3.951 21 N -0.265 5.265 22 C -0.018 4.018 23 H 0.119 0.881 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.081 0.919 27 H 0.172 0.828 28 H 0.153 0.847 29 H 0.172 0.828 30 H 0.153 0.847 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.807 1.056 0.081 4.922 hybrid contribution -0.620 -0.139 -0.657 0.914 sum 4.187 0.917 -0.576 4.325 Atomic orbital electron populations 1.21727 0.86864 1.05208 1.05753 1.21303 0.91763 0.79962 0.76377 1.90560 1.71169 1.31364 1.55542 1.48568 0.95205 1.09005 1.69761 1.17996 0.89673 0.74477 0.97211 0.95001 1.21294 1.25377 1.01730 1.08815 0.92378 1.25459 0.97564 0.95054 0.98209 1.69727 1.41800 1.06782 1.34562 0.85518 0.78464 0.78362 0.79091 1.21023 1.20093 1.19198 1.20505 0.93472 0.95116 1.07092 1.21677 0.99746 0.93296 0.93991 1.21298 0.92188 1.00366 1.07197 1.21040 0.99256 0.92049 0.97814 1.20252 0.93411 0.95328 1.11847 1.18583 0.95953 0.82309 0.98268 1.46200 0.95051 1.04085 1.81129 1.21751 0.90621 0.87827 1.01588 0.88117 0.89422 0.87341 0.91887 0.82785 0.84664 0.82791 0.84680 0.93175 0.88881 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 8.81 71.24 0.63 -4.14 16 2 C 0.51 22.62 7.89 87.66 0.69 23.31 16 3 O -0.60 -28.12 15.02 -3.02 -0.05 -28.16 16 4 N -0.41 -19.19 3.68 -448.07 -1.65 -20.84 16 5 C 0.31 15.27 2.51 43.50 0.11 15.38 16 6 H 0.03 1.72 8.05 -2.39 -0.02 1.70 16 7 C -0.53 -26.91 7.38 25.60 0.19 -26.72 16 8 H 0.06 2.96 7.16 -2.92 -0.02 2.94 16 9 C 0.04 1.91 5.27 84.66 0.45 2.35 16 10 N -0.89 -44.40 9.52 21.45 0.20 -44.19 16 11 Si 0.96 39.60 29.54 68.60 2.03 41.62 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 14 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 15 C -0.16 -7.54 5.48 -19.71 -0.11 -7.65 16 16 C -0.07 -3.07 9.23 22.20 0.20 -2.87 16 17 C -0.19 -6.95 10.06 22.31 0.22 -6.73 16 18 C -0.08 -2.68 10.02 22.22 0.22 -2.46 16 19 C -0.18 -6.56 9.79 22.46 0.22 -6.34 16 20 C 0.15 6.54 6.76 38.35 0.26 6.80 16 21 N -0.46 -20.47 4.09 -360.75 -1.48 -21.95 16 22 C 0.12 4.41 10.37 127.77 1.32 5.74 16 23 H 0.10 3.42 7.71 -2.39 -0.02 3.40 16 24 H 0.09 3.17 7.16 -2.39 -0.02 3.16 16 25 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 26 H 0.27 12.75 8.31 -92.71 -0.77 11.98 16 27 H 0.16 7.43 5.00 -2.91 -0.01 7.41 16 28 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 29 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 30 H 0.14 3.90 7.84 -2.91 -0.02 3.88 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 2.71 7.82 -2.39 -0.02 2.69 16 33 H 0.07 2.80 6.16 -2.39 -0.01 2.78 16 Total: -1.00 -60.63 274.36 4.59 -56.04 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 1.12 Total: 20.80 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 4.41 Total: -3.33 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -2.92 Total: -86.98 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.05 Total: -28.16 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.62 kcal Total: -60.63 4.59 -56.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584621335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.446 kcal (2) G-P(sol) polarization free energy of solvation -60.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds