Wall clock time and date at job start Mon Mar 30 2020 04:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46833 * 2 1 4 4 C 1.50698 * 109.47211 * 240.00017 * 2 1 3 5 5 H 1.07998 * 120.00082 * 240.00513 * 4 2 1 6 6 C 1.37880 * 120.00119 * 59.99435 * 4 2 1 7 7 N 1.31519 * 119.99637 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00289 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46655 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47205 * 120.00145 * 8 6 4 11 11 H 1.48500 * 109.47317 * 240.00473 * 8 6 4 12 12 C 1.50700 * 109.47233 * 119.99866 * 2 1 3 13 13 O 1.21290 * 119.99871 * 84.75573 * 12 2 1 14 14 N 1.34782 * 120.00025 * 264.75888 * 12 2 1 15 15 C 1.46609 * 124.98108 * 355.10879 * 14 12 2 16 16 C 1.53817 * 105.21331 * 180.02562 * 15 14 12 17 17 C 1.50902 * 104.54454 * 359.97438 * 16 15 14 18 18 C 1.38301 * 132.11413 * 180.02562 * 17 16 15 19 19 C 1.38330 * 119.06265 * 179.97438 * 18 17 16 20 20 N 1.31890 * 120.58821 * 0.02562 * 19 18 17 21 21 C 1.31617 * 122.09179 * 359.97438 * 20 19 18 22 22 C 1.38794 * 108.66474 * 359.97438 * 17 16 15 23 23 H 1.08998 * 109.46631 * 173.95153 * 1 2 3 24 24 H 1.09000 * 109.46804 * 293.94711 * 1 2 3 25 25 H 1.08998 * 109.47265 * 53.94421 * 1 2 3 26 26 H 0.97004 * 119.99647 * 179.97438 * 7 6 4 27 27 H 1.08997 * 110.29495 * 61.08320 * 15 14 12 28 28 H 1.09006 * 110.37414 * 298.99596 * 15 14 12 29 29 H 1.08997 * 110.41762 * 241.23177 * 16 15 14 30 30 H 1.08996 * 110.42576 * 118.76518 * 16 15 14 31 31 H 1.08001 * 120.47470 * 359.95016 * 18 17 16 32 32 H 1.07992 * 119.70842 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.59478 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1455 -2.2876 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1465 -0.1874 -4.8165 12 6 2.0324 -0.7104 1.2305 13 8 2.1441 -1.9181 1.2303 14 7 2.3576 -0.0036 2.3311 15 6 2.3626 1.4598 2.4192 16 6 2.7981 1.7759 3.8602 17 6 3.0121 0.4245 4.4965 18 6 3.4056 0.0501 5.7684 19 6 3.5165 -1.2957 6.0686 20 7 3.2517 -2.2108 5.1565 21 6 2.8748 -1.8932 3.9361 22 6 2.7383 -0.5580 3.5552 23 1 -0.3632 -1.0220 -0.1083 24 1 -0.3633 0.4171 0.9392 25 1 -0.3634 0.6048 -0.8308 26 1 0.7093 1.1617 -3.4844 27 1 1.3636 1.8533 2.2311 28 1 3.0739 1.8804 1.7084 29 1 2.0134 2.3223 4.3834 30 1 3.7259 2.3480 3.8603 31 1 3.6236 0.7978 6.5166 32 1 3.8233 -1.5997 7.0584 33 1 2.6679 -2.6758 3.2211 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597475550.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:19 Heat of formation + Delta-G solvation = 1.738159 kcal Electronic energy + Delta-G solvation = -17593.765136 eV Core-core repulsion = 14812.327545 eV Total energy + Delta-G solvation = -2781.437591 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08521 -38.71006 -36.68849 -33.92554 -32.53750 -30.93307 -29.76641 -29.55894 -25.31585 -24.27821 -23.57037 -22.03597 -21.66293 -19.07121 -16.88326 -16.62308 -16.09928 -15.89472 -15.81389 -15.10018 -14.40063 -13.94621 -13.76128 -13.44015 -13.10615 -12.84081 -12.62667 -12.08768 -11.98887 -11.66798 -11.52776 -11.10634 -10.90193 -10.78302 -10.45104 -10.35032 -10.14577 -9.40848 -9.26425 -9.14178 -8.87682 -8.49355 -7.63996 -6.16283 -4.20749 1.29609 1.35618 3.17696 3.25352 3.33439 3.36725 3.43458 4.02490 4.33655 4.40622 4.54852 4.76755 4.98970 5.10034 5.15714 5.18568 5.29783 5.61058 5.69471 5.77731 5.88259 5.90005 6.08310 6.34539 6.43854 6.58335 6.70680 6.83215 7.04192 7.32101 7.60916 7.73407 7.89776 8.12659 8.19558 8.78937 8.85598 9.44637 10.91417 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.038458 B = 0.006047 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.891673 B = 4629.095664 C = 5016.169385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.038 3.962 3 H 0.049 0.951 4 C -0.506 4.506 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.902 3.098 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.531 3.469 13 O -0.518 6.518 14 N -0.560 5.560 15 C 0.104 3.896 16 C -0.085 4.085 17 C -0.114 4.114 18 C -0.130 4.130 19 C 0.052 3.948 20 N -0.460 5.460 21 C 0.083 3.917 22 C 0.116 3.884 23 H 0.039 0.961 24 H 0.010 0.990 25 H 0.094 0.906 26 H 0.263 0.737 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.155 0.845 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.649 4.931 13.247 14.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.017 3.983 3 H 0.067 0.933 4 C -0.544 4.544 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.729 3.271 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.325 3.675 13 O -0.391 6.391 14 N -0.283 5.283 15 C -0.019 4.019 16 C -0.122 4.122 17 C -0.125 4.125 18 C -0.151 4.151 19 C -0.105 4.105 20 N -0.169 5.169 21 C -0.078 4.078 22 C 0.016 3.984 23 H 0.058 0.942 24 H 0.029 0.971 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.150 0.850 32 H 0.172 0.828 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.643 3.488 13.098 13.810 hybrid contribution 0.211 0.621 -1.014 1.207 sum 2.853 4.109 12.084 13.079 Atomic orbital electron populations 1.21691 0.95551 1.01447 0.99833 1.18926 0.94542 0.96645 0.88162 0.93342 1.21018 1.31826 1.12662 0.88922 0.91342 1.24921 0.94846 0.94968 0.99130 1.69883 1.36599 1.22831 1.23761 0.86359 0.78732 0.79748 0.82240 1.19526 1.20800 1.20905 1.22397 0.74212 0.87851 0.83029 1.90532 1.51266 1.15026 1.82245 1.46599 1.64799 1.07600 1.09337 1.22150 1.03348 0.79586 0.96803 1.21120 1.02896 0.94152 0.94074 1.20374 1.02496 0.95571 0.94101 1.21337 1.00930 0.97575 0.95216 1.22550 1.00330 0.88761 0.98893 1.67584 1.10032 1.38019 1.01247 1.22744 0.98394 0.93399 0.93288 1.19707 0.96417 0.95041 0.87240 0.94154 0.97058 0.88745 0.92760 0.89492 0.89372 0.88949 0.88924 0.84960 0.82801 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.86 37.16 0.33 -2.62 16 2 C 0.04 0.93 2.33 -92.92 -0.22 0.71 16 3 H 0.05 1.16 6.91 -51.93 -0.36 0.80 16 4 C -0.51 -13.91 8.31 -34.44 -0.29 -14.20 16 5 H 0.07 1.98 7.26 -52.49 -0.38 1.60 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.17 11.39 55.43 0.63 -23.54 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.53 12.19 6.77 -10.98 -0.07 12.12 16 13 O -0.52 -13.23 14.41 5.55 0.08 -13.15 16 14 N -0.56 -10.55 3.13 -112.81 -0.35 -10.90 16 15 C 0.10 1.48 6.15 -3.56 -0.02 1.46 16 16 C -0.09 -0.95 6.93 -27.36 -0.19 -1.14 16 17 C -0.11 -1.60 6.29 -104.29 -0.66 -2.26 16 18 C -0.13 -1.56 10.11 -39.52 -0.40 -1.96 16 19 C 0.05 0.69 11.20 -17.49 -0.20 0.49 16 20 N -0.46 -7.72 10.33 -12.94 -0.13 -7.85 16 21 C 0.08 1.54 10.65 -17.17 -0.18 1.36 16 22 C 0.12 2.06 6.63 -83.61 -0.55 1.51 16 23 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.09 2.33 6.26 -51.93 -0.32 2.01 16 26 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.09 1.21 7.95 -51.93 -0.41 0.80 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.17 3.41 6.38 -52.48 -0.33 3.07 16 LS Contribution 279.53 15.07 4.21 4.21 Total: -1.00 -30.93 279.53 -7.03 -37.97 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -3.91 Total: 0.01 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.54 Total: -2.93 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.14 Total: -42.30 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.93 -7.03 -37.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597475550.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.706 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds