Wall clock time and date at job start Mon Mar 30 2020 04:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46833 * 2 1 4 4 C 1.50698 * 109.47211 * 240.00017 * 2 1 3 5 5 H 1.07998 * 120.00082 * 240.00513 * 4 2 1 6 6 C 1.37880 * 120.00119 * 59.99435 * 4 2 1 7 7 N 1.31519 * 119.99637 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00289 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46655 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47205 * 120.00145 * 8 6 4 11 11 H 1.48500 * 109.47317 * 240.00473 * 8 6 4 12 12 C 1.50700 * 109.47233 * 119.99866 * 2 1 3 13 13 O 1.21290 * 119.99871 * 84.75573 * 12 2 1 14 14 N 1.34782 * 120.00025 * 264.75888 * 12 2 1 15 15 C 1.46609 * 124.98108 * 355.10879 * 14 12 2 16 16 C 1.53817 * 105.21331 * 180.02562 * 15 14 12 17 17 C 1.50902 * 104.54454 * 359.97438 * 16 15 14 18 18 C 1.38301 * 132.11413 * 180.02562 * 17 16 15 19 19 C 1.38330 * 119.06265 * 179.97438 * 18 17 16 20 20 N 1.31890 * 120.58821 * 0.02562 * 19 18 17 21 21 C 1.31617 * 122.09179 * 359.97438 * 20 19 18 22 22 C 1.38794 * 108.66474 * 359.97438 * 17 16 15 23 23 H 1.08998 * 109.46631 * 173.95153 * 1 2 3 24 24 H 1.09000 * 109.46804 * 293.94711 * 1 2 3 25 25 H 1.08998 * 109.47265 * 53.94421 * 1 2 3 26 26 H 0.97004 * 119.99647 * 179.97438 * 7 6 4 27 27 H 1.08997 * 110.29495 * 61.08320 * 15 14 12 28 28 H 1.09006 * 110.37414 * 298.99596 * 15 14 12 29 29 H 1.08997 * 110.41762 * 241.23177 * 16 15 14 30 30 H 1.08996 * 110.42576 * 118.76518 * 16 15 14 31 31 H 1.08001 * 120.47470 * 359.95016 * 18 17 16 32 32 H 1.07992 * 119.70842 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.59478 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1455 -2.2876 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1465 -0.1874 -4.8165 12 6 2.0324 -0.7104 1.2305 13 8 2.1441 -1.9181 1.2303 14 7 2.3576 -0.0036 2.3311 15 6 2.3626 1.4598 2.4192 16 6 2.7981 1.7759 3.8602 17 6 3.0121 0.4245 4.4965 18 6 3.4056 0.0501 5.7684 19 6 3.5165 -1.2957 6.0686 20 7 3.2517 -2.2108 5.1565 21 6 2.8748 -1.8932 3.9361 22 6 2.7383 -0.5580 3.5552 23 1 -0.3632 -1.0220 -0.1083 24 1 -0.3633 0.4171 0.9392 25 1 -0.3634 0.6048 -0.8308 26 1 0.7093 1.1617 -3.4844 27 1 1.3636 1.8533 2.2311 28 1 3.0739 1.8804 1.7084 29 1 2.0134 2.3223 4.3834 30 1 3.7259 2.3480 3.8603 31 1 3.6236 0.7978 6.5166 32 1 3.8233 -1.5997 7.0584 33 1 2.6679 -2.6758 3.2211 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597475550.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:18 Heat of formation + Delta-G solvation = -18.073408 kcal Electronic energy + Delta-G solvation = -17594.624230 eV Core-core repulsion = 14812.327545 eV Total energy + Delta-G solvation = -2782.296685 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.36400 -40.22323 -38.05758 -35.91076 -33.79874 -32.73640 -31.00961 -30.81679 -27.35985 -25.79416 -24.73770 -23.53247 -22.86535 -20.58561 -18.60028 -18.26325 -17.57733 -17.20447 -16.98541 -16.75808 -16.08104 -15.29408 -15.19327 -14.71669 -14.59722 -14.51870 -13.81783 -13.62478 -13.24255 -13.00863 -12.95765 -12.78378 -12.72019 -12.66440 -12.31653 -12.16465 -11.74262 -11.15936 -10.73543 -10.56503 -10.47711 -10.29311 -8.97291 -8.22935 -6.34135 0.08771 0.22740 1.37146 1.39883 1.51552 1.71932 1.81717 2.40400 2.83950 3.07234 3.29557 3.50386 3.63188 3.83722 3.99326 4.16918 4.19673 4.37876 4.60954 4.64871 4.73568 4.82853 4.85836 4.90858 4.99578 5.02109 5.20560 5.26002 5.41138 5.62411 5.78493 5.85379 6.04830 6.33453 6.69138 6.99611 7.13538 7.34253 8.83606 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.038458 B = 0.006047 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.891673 B = 4629.095664 C = 5016.169385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.038 3.962 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.040 0.960 6 C 0.028 3.972 7 N -0.905 5.905 8 Si 0.956 3.044 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.269 1.269 12 C 0.528 3.472 13 O -0.563 6.563 14 N -0.561 5.561 15 C 0.089 3.911 16 C -0.072 4.072 17 C -0.100 4.100 18 C -0.114 4.114 19 C 0.059 3.941 20 N -0.487 5.487 21 C 0.053 3.947 22 C 0.074 3.926 23 H 0.019 0.981 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.268 0.732 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.186 0.814 32 H 0.196 0.804 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.318 7.477 15.578 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.017 3.983 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.058 0.942 6 C -0.173 4.173 7 N -0.543 5.543 8 Si 0.782 3.218 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.194 1.194 12 C 0.321 3.679 13 O -0.440 6.440 14 N -0.284 5.284 15 C -0.032 4.032 16 C -0.108 4.108 17 C -0.110 4.110 18 C -0.133 4.133 19 C -0.099 4.099 20 N -0.196 5.196 21 C -0.106 4.106 22 C -0.025 4.025 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.203 0.797 32 H 0.212 0.788 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.310 6.078 15.453 16.932 hybrid contribution 0.053 -0.136 -1.549 1.556 sum 3.363 5.942 13.903 15.489 Atomic orbital electron populations 1.21508 0.94980 1.00024 1.00751 1.18819 0.95026 0.96388 0.88087 0.92960 1.21120 1.32527 1.12508 0.91059 0.94191 1.25530 0.94893 0.95620 1.01222 1.69934 1.36548 1.23173 1.24639 0.85529 0.78416 0.78575 0.79297 1.20725 1.19935 1.19364 1.22015 0.74493 0.87316 0.84054 1.90506 1.53489 1.16700 1.83313 1.46387 1.63951 1.09354 1.08757 1.22543 1.04238 0.76788 0.99651 1.21241 1.05478 0.92862 0.91235 1.20873 1.00297 0.95935 0.93939 1.21873 0.98248 0.98086 0.95124 1.23389 0.97840 0.89204 0.99457 1.67544 1.11164 1.39822 1.01106 1.22315 1.00887 0.93457 0.93942 1.19875 0.99158 0.95706 0.87751 0.96147 0.94090 0.90139 0.92223 0.88643 0.89262 0.85450 0.85779 0.79665 0.78764 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.44 8.86 71.98 0.64 -4.80 16 2 C 0.04 1.91 2.33 -12.28 -0.03 1.88 16 3 H 0.05 2.54 6.91 -2.39 -0.02 2.53 16 4 C -0.53 -30.64 8.31 25.60 0.21 -30.43 16 5 H 0.04 2.47 7.26 -2.91 -0.02 2.45 16 6 C 0.03 1.52 5.30 84.65 0.45 1.97 16 7 N -0.90 -49.22 11.39 21.45 0.24 -48.98 16 8 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 9 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 C 0.53 25.47 6.77 87.66 0.59 26.06 16 13 O -0.56 -31.14 14.41 -3.06 -0.04 -31.18 16 14 N -0.56 -21.44 3.13 -629.21 -1.97 -23.41 16 15 C 0.09 2.36 6.15 86.63 0.53 2.90 16 16 C -0.07 -1.25 6.93 30.19 0.21 -1.05 16 17 C -0.10 -2.44 6.29 -19.65 -0.12 -2.56 16 18 C -0.11 -2.13 10.11 22.31 0.23 -1.90 16 19 C 0.06 1.35 11.20 84.71 0.95 2.30 16 20 N -0.49 -16.21 10.33 -194.86 -2.01 -18.22 16 21 C 0.05 2.07 10.65 85.03 0.91 2.97 16 22 C 0.07 2.61 6.63 38.33 0.25 2.87 16 23 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.08 4.03 6.26 -2.39 -0.01 4.02 16 26 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 27 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.09 2.33 7.95 -2.38 -0.02 2.31 16 29 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.20 2.75 8.06 -2.91 -0.02 2.72 16 33 H 0.13 5.93 6.38 -2.91 -0.02 5.91 16 Total: -1.00 -72.53 279.53 4.18 -68.35 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.12 Total: 7.06 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 4.82 Total: 0.21 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -3.74 Total: -90.61 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.04 Total: -31.18 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -72.53 4.18 -68.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597475550.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.276 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds