Wall clock time and date at job start Mon Mar 30 2020 03:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38169 * 119.55168 * 2 1 4 4 C 1.39791 * 119.00290 * 180.26452 * 3 2 1 5 5 C 1.48147 * 120.92648 * 180.02562 * 4 3 2 6 6 O 1.21515 * 119.99758 * 352.45401 * 5 4 3 7 7 N 1.34772 * 120.00627 * 172.46339 * 5 4 3 8 8 C 1.47068 * 136.05312 * 2.83277 * 7 5 4 9 9 C 1.53242 * 88.08603 * 207.20818 * 8 7 5 10 10 C 1.50701 * 114.32762 * 220.47395 * 9 8 7 11 11 H 1.08001 * 119.99793 * 93.75495 * 10 9 8 12 12 C 1.37874 * 119.99584 * 273.75456 * 10 9 8 13 13 N 1.31516 * 119.99575 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00455 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46712 * 89.99744 * 14 12 10 16 16 H 1.48497 * 109.47628 * 209.99821 * 14 12 10 17 17 H 1.48503 * 109.47042 * 330.00347 * 14 12 10 18 18 C 1.47062 * 136.06233 * 183.21209 * 7 5 4 19 19 C 1.39836 * 118.15239 * 0.02562 * 4 3 2 20 20 C 1.38125 * 119.00762 * 0.02562 * 19 4 3 21 21 N 1.31794 * 119.55221 * 180.27369 * 2 1 3 22 22 H 1.09001 * 109.46821 * 269.72339 * 1 2 3 23 23 H 1.08992 * 109.47531 * 29.72772 * 1 2 3 24 24 H 1.09004 * 109.47164 * 149.73367 * 1 2 3 25 25 H 1.08005 * 120.49589 * 0.25651 * 3 2 1 26 26 H 1.09002 * 113.47274 * 321.93953 * 8 7 5 27 27 H 1.08999 * 113.46650 * 92.38047 * 8 7 5 28 28 H 1.08996 * 114.01730 * 87.71434 * 9 8 7 29 29 H 0.97005 * 119.99799 * 180.02562 * 13 12 10 30 30 H 1.08998 * 113.46556 * 267.61879 * 18 7 5 31 31 H 1.08995 * 113.46893 * 37.99645 * 18 7 5 32 32 H 1.08006 * 120.50002 * 179.97438 * 19 4 3 33 33 H 1.07995 * 119.55588 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5863 1.1886 -0.0056 5 6 4.3598 2.4521 -0.0053 6 8 3.7867 3.5153 -0.1383 7 7 5.6991 2.4224 0.1423 8 6 6.7272 1.3788 0.2725 9 6 7.5775 2.3861 1.0539 10 6 9.0466 2.3495 0.7197 11 1 9.4467 3.0164 -0.0297 12 6 9.8797 1.4647 1.3708 13 7 11.1619 1.4332 1.0796 14 14 9.1876 0.3108 2.6665 15 1 8.7561 -0.9555 2.0217 16 1 10.2336 0.0191 3.6793 17 1 8.0226 0.9513 3.3282 18 6 6.7749 3.4192 0.2509 19 6 4.2342 -0.0506 -0.0116 20 6 3.4741 -1.2039 -0.0123 21 7 2.1570 -1.1465 -0.0055 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8923 -0.5095 24 1 -0.3634 -0.8876 -0.5180 25 1 1.6492 2.1377 0.0042 26 1 6.4070 0.5263 0.8715 27 1 7.1690 1.0837 -0.6792 28 1 7.3772 2.3991 2.1252 29 1 11.7480 0.8104 1.5374 30 1 7.2296 3.6730 -0.7067 31 1 6.4949 4.2986 0.8306 32 1 5.3129 -0.1052 -0.0165 33 1 3.9653 -2.1657 -0.0164 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598023637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:29 Heat of formation + Delta-G solvation = 42.985442 kcal Electronic energy + Delta-G solvation = -17162.826833 eV Core-core repulsion = 14383.177859 eV Total energy + Delta-G solvation = -2779.648974 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66336 -39.38463 -37.37531 -33.35586 -32.69235 -32.38470 -29.73353 -27.81978 -25.98762 -25.41193 -23.59827 -22.70583 -20.25257 -18.89913 -17.40735 -17.02942 -16.54292 -15.99376 -15.29379 -15.18220 -14.57886 -14.46609 -14.06278 -13.69662 -13.30733 -12.96931 -12.58510 -12.53442 -12.36617 -11.94604 -11.92042 -11.73559 -11.02798 -10.76834 -10.17847 -10.07438 -9.86921 -9.68448 -9.52141 -9.21060 -9.04117 -8.75315 -8.23623 -6.29165 -4.33144 0.75094 1.01428 3.03680 3.11918 3.15530 3.23515 3.24808 3.83026 4.16873 4.22085 4.49473 4.65285 4.89245 4.96426 5.00689 5.28223 5.37531 5.42080 5.55341 5.61860 5.72073 5.80284 5.88834 5.95785 6.02822 6.14058 6.16457 6.25637 6.39876 6.57596 7.04977 7.43989 7.84298 8.09728 8.26440 8.39333 8.74039 9.30694 10.82621 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031012 B = 0.006089 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.666105 B = 4597.599850 C = 5263.464821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.117 3.883 3 C -0.119 4.119 4 C -0.071 4.071 5 C 0.574 3.426 6 O -0.550 6.550 7 N -0.634 5.634 8 C 0.074 3.926 9 C -0.011 4.011 10 C -0.513 4.513 11 H 0.082 0.918 12 C 0.079 3.921 13 N -0.890 5.890 14 Si 0.871 3.129 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.262 1.262 18 C 0.116 3.884 19 C -0.161 4.161 20 C 0.098 3.902 21 N -0.476 5.476 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.145 0.855 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.268 0.732 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.156 0.844 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.857 -4.736 -1.027 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.021 4.021 3 C -0.140 4.140 4 C -0.082 4.082 5 C 0.363 3.637 6 O -0.430 6.430 7 N -0.367 5.367 8 C -0.049 4.049 9 C -0.030 4.030 10 C -0.551 4.551 11 H 0.100 0.900 12 C -0.125 4.125 13 N -0.526 5.526 14 Si 0.697 3.303 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.187 1.187 18 C -0.005 4.005 19 C -0.181 4.181 20 C -0.059 4.059 21 N -0.186 5.186 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.163 0.837 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.173 0.827 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.652 -5.009 -1.085 16.470 hybrid contribution 0.383 -0.031 0.622 0.732 sum -15.269 -5.040 -0.462 16.085 Atomic orbital electron populations 1.20700 0.88441 1.03531 1.03177 1.21262 0.97185 0.87888 0.95770 1.22087 0.93279 0.99952 0.98700 1.20432 0.94221 0.93854 0.99717 1.17685 0.80612 0.88055 0.77336 1.90726 1.69295 1.31383 1.51562 1.49795 1.03450 1.14320 1.69129 1.24112 0.85675 0.93358 1.01723 1.20889 0.95423 0.91009 0.95725 1.20742 0.88855 1.21868 1.23611 0.90028 1.24994 0.94548 0.96703 0.96226 1.69884 1.03775 1.36880 1.42039 0.86925 0.79477 0.81592 0.82256 1.19810 1.20998 1.18691 1.23191 0.83127 0.93607 1.00616 1.23109 1.03372 0.92563 0.99028 1.22747 0.89070 0.98514 0.95532 1.67366 1.10400 1.29458 1.11394 0.90354 0.90552 0.90389 0.83713 0.91911 0.88882 0.91368 0.92220 0.89758 0.91644 0.82663 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 10.17 36.01 0.37 -0.55 16 2 C 0.12 1.50 6.78 -82.63 -0.56 0.94 16 3 C -0.12 -1.71 9.31 -39.03 -0.36 -2.07 16 4 C -0.07 -1.15 5.91 -104.65 -0.62 -1.77 16 5 C 0.57 10.88 8.03 -12.19 -0.10 10.79 16 6 O -0.55 -11.76 17.25 5.35 0.09 -11.67 16 7 N -0.63 -11.95 3.69 -186.41 -0.69 -12.64 16 8 C 0.07 1.35 5.67 -8.64 -0.05 1.30 16 9 C -0.01 -0.23 2.99 -91.39 -0.27 -0.50 16 10 C -0.51 -12.77 9.38 -34.44 -0.32 -13.10 16 11 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 12 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.89 -24.93 13.96 55.43 0.77 -24.15 16 14 Si 0.87 19.21 27.42 -169.99 -4.66 14.55 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.26 -5.57 6.21 56.52 0.35 -5.22 16 18 C 0.12 2.23 8.19 -8.51 -0.07 2.16 16 19 C -0.16 -2.32 9.27 -39.03 -0.36 -2.68 16 20 C 0.10 1.27 11.17 -17.59 -0.20 1.08 16 21 N -0.48 -6.55 10.25 -9.52 -0.10 -6.64 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.15 1.94 7.76 -52.48 -0.41 1.53 16 26 H 0.06 1.05 6.15 -51.93 -0.32 0.74 16 27 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 28 H 0.07 1.46 6.50 -51.93 -0.34 1.12 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.16 2.17 4.03 -52.48 -0.21 1.96 16 33 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 282.86 15.07 4.26 4.26 Total: -1.00 -29.71 282.86 -6.80 -36.51 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.83 Total: 2.23 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.64 Total: -2.45 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -0.01 Total: -43.43 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.66 Total: 14.55 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.71 -6.80 -36.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598023637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.494 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds