Wall clock time and date at job start Mon Mar 30 2020 03:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38169 * 119.55168 * 2 1 4 4 C 1.39791 * 119.00290 * 180.26452 * 3 2 1 5 5 C 1.48147 * 120.92648 * 180.02562 * 4 3 2 6 6 O 1.21515 * 119.99758 * 352.45401 * 5 4 3 7 7 N 1.34772 * 120.00627 * 172.46339 * 5 4 3 8 8 C 1.47068 * 136.05312 * 2.83277 * 7 5 4 9 9 C 1.53242 * 88.08603 * 207.20818 * 8 7 5 10 10 C 1.50701 * 114.32762 * 220.47395 * 9 8 7 11 11 H 1.08001 * 119.99793 * 93.75495 * 10 9 8 12 12 C 1.37874 * 119.99584 * 273.75456 * 10 9 8 13 13 N 1.31516 * 119.99575 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00455 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46712 * 89.99744 * 14 12 10 16 16 H 1.48497 * 109.47628 * 209.99821 * 14 12 10 17 17 H 1.48503 * 109.47042 * 330.00347 * 14 12 10 18 18 C 1.47062 * 136.06233 * 183.21209 * 7 5 4 19 19 C 1.39836 * 118.15239 * 0.02562 * 4 3 2 20 20 C 1.38125 * 119.00762 * 0.02562 * 19 4 3 21 21 N 1.31794 * 119.55221 * 180.27369 * 2 1 3 22 22 H 1.09001 * 109.46821 * 269.72339 * 1 2 3 23 23 H 1.08992 * 109.47531 * 29.72772 * 1 2 3 24 24 H 1.09004 * 109.47164 * 149.73367 * 1 2 3 25 25 H 1.08005 * 120.49589 * 0.25651 * 3 2 1 26 26 H 1.09002 * 113.47274 * 321.93953 * 8 7 5 27 27 H 1.08999 * 113.46650 * 92.38047 * 8 7 5 28 28 H 1.08996 * 114.01730 * 87.71434 * 9 8 7 29 29 H 0.97005 * 119.99799 * 180.02562 * 13 12 10 30 30 H 1.08998 * 113.46556 * 267.61879 * 18 7 5 31 31 H 1.08995 * 113.46893 * 37.99645 * 18 7 5 32 32 H 1.08006 * 120.50002 * 179.97438 * 19 4 3 33 33 H 1.07995 * 119.55588 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5863 1.1886 -0.0056 5 6 4.3598 2.4521 -0.0053 6 8 3.7867 3.5153 -0.1383 7 7 5.6991 2.4224 0.1423 8 6 6.7272 1.3788 0.2725 9 6 7.5775 2.3861 1.0539 10 6 9.0466 2.3495 0.7197 11 1 9.4467 3.0164 -0.0297 12 6 9.8797 1.4647 1.3708 13 7 11.1619 1.4332 1.0796 14 14 9.1876 0.3108 2.6665 15 1 8.7561 -0.9555 2.0217 16 1 10.2336 0.0191 3.6793 17 1 8.0226 0.9513 3.3282 18 6 6.7749 3.4192 0.2509 19 6 4.2342 -0.0506 -0.0116 20 6 3.4741 -1.2039 -0.0123 21 7 2.1570 -1.1465 -0.0055 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8923 -0.5095 24 1 -0.3634 -0.8876 -0.5180 25 1 1.6492 2.1377 0.0042 26 1 6.4070 0.5263 0.8715 27 1 7.1690 1.0837 -0.6792 28 1 7.3772 2.3991 2.1252 29 1 11.7480 0.8104 1.5374 30 1 7.2296 3.6730 -0.7067 31 1 6.4949 4.2986 0.8306 32 1 5.3129 -0.1052 -0.0165 33 1 3.9653 -2.1657 -0.0164 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598023637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:28 Heat of formation + Delta-G solvation = 23.804197 kcal Electronic energy + Delta-G solvation = -17163.658594 eV Core-core repulsion = 14383.177859 eV Total energy + Delta-G solvation = -2780.480736 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.91787 -40.70839 -38.91906 -34.77882 -34.25820 -33.44247 -31.35729 -28.72634 -27.64364 -26.94721 -24.89641 -23.77484 -21.83176 -20.31527 -19.21000 -18.39301 -17.82746 -17.14849 -16.79640 -16.47987 -15.97242 -15.61496 -15.47145 -15.09518 -14.80539 -14.37082 -13.99500 -13.60835 -13.49530 -13.31957 -13.10317 -12.92655 -12.71111 -12.37971 -11.84167 -11.69420 -11.27345 -11.21320 -11.02282 -10.73979 -10.46213 -10.02685 -9.77488 -8.27757 -6.36464 -0.41626 0.00414 1.40599 1.45604 1.52799 1.67698 1.73382 2.37905 2.72678 3.00796 3.17458 3.28703 3.67909 3.88210 3.91291 3.96213 4.20030 4.26343 4.35873 4.47717 4.59426 4.62611 4.67305 4.72243 4.78244 4.83928 4.93754 5.06504 5.15791 5.34518 5.57323 5.58682 6.27012 6.61795 6.71585 6.83734 6.89535 7.31260 8.87566 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031012 B = 0.006089 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.666105 B = 4597.599850 C = 5263.464821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.119 3.881 3 C -0.126 4.126 4 C -0.092 4.092 5 C 0.572 3.428 6 O -0.581 6.581 7 N -0.635 5.635 8 C 0.087 3.913 9 C -0.017 4.017 10 C -0.513 4.513 11 H 0.044 0.956 12 C 0.025 3.975 13 N -0.942 5.942 14 Si 0.932 3.068 15 H -0.251 1.251 16 H -0.292 1.292 17 H -0.246 1.246 18 C 0.116 3.884 19 C -0.165 4.165 20 C 0.103 3.897 21 N -0.485 5.485 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.269 0.731 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.159 0.841 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.189 -6.712 -0.374 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.018 4.018 3 C -0.147 4.147 4 C -0.103 4.103 5 C 0.363 3.637 6 O -0.463 6.463 7 N -0.367 5.367 8 C -0.035 4.035 9 C -0.036 4.036 10 C -0.550 4.550 11 H 0.062 0.938 12 C -0.174 4.174 13 N -0.581 5.581 14 Si 0.755 3.245 15 H -0.175 1.175 16 H -0.218 1.218 17 H -0.170 1.170 18 C -0.006 4.006 19 C -0.185 4.185 20 C -0.053 4.053 21 N -0.196 5.196 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.166 0.834 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.177 0.823 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -18.010 -6.989 -0.443 19.323 hybrid contribution 1.086 0.659 0.357 1.319 sum -16.924 -6.330 -0.086 18.069 Atomic orbital electron populations 1.20823 0.85768 1.04720 1.04412 1.21800 0.98906 0.87055 0.94080 1.22223 0.92681 1.00857 0.98947 1.20329 0.94853 0.93048 1.02033 1.18156 0.80371 0.88818 0.76312 1.90700 1.69757 1.32866 1.53007 1.49752 1.03622 1.14090 1.69246 1.23914 0.84582 0.93236 1.01767 1.20773 0.93274 0.93373 0.96224 1.20879 0.91127 1.20690 1.22351 0.93770 1.25812 0.94558 0.98525 0.98494 1.70033 1.05523 1.38492 1.44020 0.85946 0.78993 0.80211 0.79358 1.17476 1.21789 1.16963 1.23110 0.83325 0.93732 1.00450 1.23140 1.03597 0.92320 0.99397 1.23250 0.88886 0.99297 0.93896 1.67503 1.10819 1.29699 1.11604 0.88932 0.89000 0.89610 0.83414 0.89459 0.88420 0.91164 0.92235 0.89815 0.91257 0.82338 0.78942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.17 71.24 0.72 -0.77 16 2 C 0.12 2.74 6.78 42.55 0.29 3.03 16 3 C -0.13 -3.37 9.31 22.63 0.21 -3.16 16 4 C -0.09 -2.81 5.91 -19.88 -0.12 -2.92 16 5 C 0.57 21.14 8.03 86.88 0.70 21.83 16 6 O -0.58 -24.68 17.25 -3.76 -0.06 -24.75 16 7 N -0.64 -23.15 3.69 -861.96 -3.18 -26.33 16 8 C 0.09 3.00 5.67 83.09 0.47 3.47 16 9 C -0.02 -0.69 2.99 -11.29 -0.03 -0.73 16 10 C -0.51 -25.87 9.38 25.60 0.24 -25.63 16 11 H 0.04 2.50 8.06 -2.91 -0.02 2.47 16 12 C 0.03 1.31 5.47 84.65 0.46 1.77 16 13 N -0.94 -54.00 13.96 21.45 0.30 -53.70 16 14 Si 0.93 38.48 27.42 68.60 1.88 40.36 16 15 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 16 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.25 -9.43 6.21 99.48 0.62 -8.81 16 18 C 0.12 4.42 8.19 83.18 0.68 5.10 16 19 C -0.16 -4.29 9.27 22.63 0.21 -4.08 16 20 C 0.10 2.32 11.17 84.67 0.95 3.27 16 21 N -0.49 -11.80 10.25 -184.05 -1.89 -13.69 16 22 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.09 1.09 8.07 -2.39 -0.02 1.07 16 24 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.15 3.76 7.76 -2.91 -0.02 3.73 16 26 H 0.09 2.63 6.15 -2.39 -0.01 2.61 16 27 H 0.10 3.31 8.10 -2.39 -0.02 3.29 16 28 H 0.07 2.87 6.50 -2.39 -0.02 2.86 16 29 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 30 H 0.08 3.18 8.10 -2.39 -0.02 3.16 16 31 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.16 3.93 4.03 -2.91 -0.01 3.91 16 33 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -64.42 282.86 2.87 -61.55 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 1.03 Total: 15.37 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 4.78 Total: 1.19 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -4.77 Total: -93.72 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.06 Total: -24.75 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.88 Total: 40.36 kcal Total: -64.42 2.87 -61.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598023637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.356 kcal (2) G-P(sol) polarization free energy of solvation -64.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds