Wall clock time and date at job start Mon Mar 30 2020 04:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47590 * 2 1 4 4 C 1.50698 * 109.47110 * 120.00042 * 2 1 3 5 5 H 1.08003 * 120.00299 * 119.99902 * 4 2 1 6 6 C 1.37882 * 119.99994 * 299.99811 * 4 2 1 7 7 N 1.31511 * 119.99691 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00158 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47161 * 270.00132 * 8 6 4 10 10 H 1.48500 * 109.47406 * 29.99613 * 8 6 4 11 11 H 1.48502 * 109.47228 * 150.00116 * 8 6 4 12 12 C 1.50699 * 109.47173 * 239.99511 * 2 1 3 13 13 O 1.21278 * 120.00377 * 323.93491 * 12 2 1 14 14 N 1.34782 * 119.99999 * 143.93007 * 12 2 1 15 15 C 1.46660 * 126.56719 * 185.17860 * 14 12 2 16 16 C 1.50633 * 107.63968 * 179.84824 * 15 14 12 17 17 C 1.38685 * 131.50447 * 180.12205 * 16 15 14 18 18 C 1.38620 * 118.45040 * 180.34118 * 17 16 15 19 19 C 1.38228 * 119.00782 * 0.02562 * 18 17 16 20 20 N 1.31725 * 120.83916 * 359.97438 * 19 18 17 21 21 C 1.32240 * 121.91048 * 0.02562 * 20 19 18 22 22 C 1.46623 * 126.56694 * 5.48585 * 14 12 2 23 23 H 1.08999 * 109.47190 * 306.28026 * 1 2 3 24 24 H 1.09001 * 109.47139 * 66.28454 * 1 2 3 25 25 H 1.08999 * 109.47300 * 186.28250 * 1 2 3 26 26 H 0.97001 * 119.99798 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.82165 * 299.52533 * 15 14 12 28 28 H 1.08995 * 109.82298 * 60.46479 * 15 14 12 29 29 H 1.08002 * 120.77679 * 0.37343 * 17 16 15 30 30 H 1.07997 * 120.49313 * 180.02562 * 18 17 16 31 31 H 1.08001 * 119.57864 * 179.97438 * 19 18 17 32 32 H 1.09005 * 109.80191 * 299.56631 * 22 14 12 33 33 H 1.08997 * 109.80141 * 60.37900 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 1.3448 -2.1615 4.4124 10 1 3.6308 -1.7566 3.7120 11 1 2.4872 -0.1401 5.1121 12 6 2.0323 -0.7105 -1.2304 13 8 1.4340 -1.6734 -1.6614 14 7 3.1465 -0.2758 -1.8519 15 6 3.7014 -0.7871 -3.1095 16 6 4.9466 0.0039 -3.4140 17 6 5.8445 -0.0654 -4.4687 18 6 6.9231 0.8053 -4.4760 19 6 7.0645 1.7061 -3.4371 20 7 6.1911 1.7429 -2.4517 21 6 5.1499 0.9288 -2.4098 22 6 4.0393 0.7946 -1.3971 23 1 -0.3633 0.6081 0.8284 24 1 -0.3633 0.4133 -0.9409 25 1 -0.3634 -1.0215 0.1125 26 1 0.7081 1.1609 3.4844 27 1 3.9488 -1.8432 -3.0020 28 1 2.9771 -0.6561 -3.9134 29 1 5.7063 -0.7807 -5.2660 30 1 7.6422 0.7802 -5.2814 31 1 7.9016 2.3885 -3.4334 32 1 3.4869 1.7317 -1.3276 33 1 4.4562 0.5388 -0.4230 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598941640.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:09 Heat of formation + Delta-G solvation = 8.177506 kcal Electronic energy + Delta-G solvation = -17374.650181 eV Core-core repulsion = 14593.491821 eV Total energy + Delta-G solvation = -2781.158360 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90060 -38.76200 -36.12958 -33.81254 -32.78590 -31.13793 -30.24189 -28.08107 -25.92287 -25.16472 -22.66207 -22.11403 -21.43560 -18.70110 -16.84480 -16.64837 -16.28832 -15.86668 -15.60073 -15.37869 -14.58591 -13.75474 -13.72061 -13.24308 -12.95533 -12.72320 -12.65184 -12.40237 -12.16034 -11.68779 -11.54501 -11.01570 -10.81099 -10.61207 -10.26281 -10.18110 -9.84079 -9.38282 -9.14919 -9.06217 -8.77593 -8.43606 -8.01350 -6.12257 -4.19739 0.97504 1.16238 3.27881 3.30991 3.34453 3.38987 3.60370 3.66103 3.89749 4.38979 4.43000 4.72896 4.92595 4.99926 5.20255 5.26298 5.45488 5.64446 5.69050 5.85377 5.95845 5.98914 5.99794 6.15322 6.56180 6.67348 6.83062 6.94502 7.05170 7.52917 7.72591 7.88718 7.90891 8.06805 8.22907 8.80027 9.04136 9.45546 10.94431 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028478 B = 0.006171 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.972249 B = 4536.083913 C = 5035.596082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.037 3.963 3 H 0.046 0.954 4 C -0.512 4.512 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.284 1.284 12 C 0.554 3.446 13 O -0.552 6.552 14 N -0.624 5.624 15 C 0.151 3.849 16 C -0.157 4.157 17 C -0.054 4.054 18 C -0.177 4.177 19 C 0.105 3.895 20 N -0.470 5.470 21 C 0.123 3.877 22 C 0.162 3.838 23 H 0.087 0.913 24 H 0.009 0.991 25 H 0.041 0.959 26 H 0.264 0.736 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.159 0.841 32 H 0.094 0.906 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.348 2.044 -11.950 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.016 3.984 3 H 0.064 0.936 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.210 1.210 12 C 0.348 3.652 13 O -0.428 6.428 14 N -0.361 5.361 15 C 0.027 3.973 16 C -0.160 4.160 17 C -0.081 4.081 18 C -0.197 4.197 19 C -0.053 4.053 20 N -0.179 5.179 21 C -0.015 4.015 22 C 0.037 3.963 23 H 0.105 0.895 24 H 0.029 0.971 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.177 0.823 32 H 0.111 0.889 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.929 2.206 -11.296 15.201 hybrid contribution 0.442 -1.019 0.002 1.111 sum 10.370 1.187 -11.295 15.379 Atomic orbital electron populations 1.21620 0.95756 1.01318 0.99302 1.18915 0.94712 0.96299 0.88481 0.93559 1.20729 1.32409 1.12695 0.89160 0.92341 1.24893 0.94720 0.94853 0.98969 1.69888 1.35953 1.22531 1.23864 0.86460 0.79344 0.79375 0.82097 1.20444 1.19818 1.21011 1.21842 0.76051 0.83279 0.84051 1.90560 1.57283 1.27893 1.67095 1.48268 1.26626 1.37544 1.23692 1.20012 0.91236 0.97446 0.88578 1.21350 0.98195 0.99586 0.96856 1.20916 0.92560 0.97893 0.96701 1.22044 0.99131 0.97692 1.00817 1.22686 0.96703 0.96777 0.89142 1.66820 1.02204 1.23145 1.25756 1.21664 0.93443 0.91288 0.95074 1.20028 0.87870 0.92648 0.95721 0.89484 0.97148 0.93999 0.92618 0.90302 0.90427 0.84679 0.84399 0.82342 0.88861 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 8.45 37.16 0.31 -2.73 16 2 C 0.04 0.93 2.30 -92.93 -0.21 0.71 16 3 H 0.05 1.16 6.98 -51.93 -0.36 0.80 16 4 C -0.51 -13.91 8.54 -34.44 -0.29 -14.20 16 5 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -24.30 11.39 55.43 0.63 -23.67 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.55 13.04 6.78 -10.98 -0.07 12.96 16 13 O -0.55 -14.28 16.80 5.56 0.09 -14.19 16 14 N -0.62 -12.19 3.34 -176.13 -0.59 -12.78 16 15 C 0.15 2.42 6.91 -5.14 -0.04 2.38 16 16 C -0.16 -2.22 6.24 -104.57 -0.65 -2.88 16 17 C -0.05 -0.59 10.17 -39.28 -0.40 -0.99 16 18 C -0.18 -1.68 10.12 -39.44 -0.40 -2.08 16 19 C 0.10 1.16 11.18 -17.60 -0.20 0.97 16 20 N -0.47 -6.97 10.36 -9.41 -0.10 -7.07 16 21 C 0.12 1.93 7.40 -82.40 -0.61 1.33 16 22 C 0.16 2.83 6.22 -5.03 -0.03 2.80 16 23 H 0.09 2.27 6.26 -51.93 -0.33 1.95 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.04 1.07 8.05 -51.93 -0.42 0.66 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.09 1.59 7.71 -51.93 -0.40 1.19 16 33 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 LS Contribution 284.16 15.07 4.28 4.28 Total: -1.00 -31.12 284.16 -7.39 -38.51 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.01 Total: -1.08 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.69 Total: 0.01 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.05 Total: -43.51 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.12 -7.39 -38.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598941640.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.690 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds