Wall clock time and date at job start Mon Mar 30 2020 04:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47590 * 2 1 4 4 C 1.50698 * 109.47110 * 120.00042 * 2 1 3 5 5 H 1.08003 * 120.00299 * 119.99902 * 4 2 1 6 6 C 1.37882 * 119.99994 * 299.99811 * 4 2 1 7 7 N 1.31511 * 119.99691 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00158 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47161 * 270.00132 * 8 6 4 10 10 H 1.48500 * 109.47406 * 29.99613 * 8 6 4 11 11 H 1.48502 * 109.47228 * 150.00116 * 8 6 4 12 12 C 1.50699 * 109.47173 * 239.99511 * 2 1 3 13 13 O 1.21278 * 120.00377 * 323.93491 * 12 2 1 14 14 N 1.34782 * 119.99999 * 143.93007 * 12 2 1 15 15 C 1.46660 * 126.56719 * 185.17860 * 14 12 2 16 16 C 1.50633 * 107.63968 * 179.84824 * 15 14 12 17 17 C 1.38685 * 131.50447 * 180.12205 * 16 15 14 18 18 C 1.38620 * 118.45040 * 180.34118 * 17 16 15 19 19 C 1.38228 * 119.00782 * 0.02562 * 18 17 16 20 20 N 1.31725 * 120.83916 * 359.97438 * 19 18 17 21 21 C 1.32240 * 121.91048 * 0.02562 * 20 19 18 22 22 C 1.46623 * 126.56694 * 5.48585 * 14 12 2 23 23 H 1.08999 * 109.47190 * 306.28026 * 1 2 3 24 24 H 1.09001 * 109.47139 * 66.28454 * 1 2 3 25 25 H 1.08999 * 109.47300 * 186.28250 * 1 2 3 26 26 H 0.97001 * 119.99798 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.82165 * 299.52533 * 15 14 12 28 28 H 1.08995 * 109.82298 * 60.46479 * 15 14 12 29 29 H 1.08002 * 120.77679 * 0.37343 * 17 16 15 30 30 H 1.07997 * 120.49313 * 180.02562 * 18 17 16 31 31 H 1.08001 * 119.57864 * 179.97438 * 19 18 17 32 32 H 1.09005 * 109.80191 * 299.56631 * 22 14 12 33 33 H 1.08997 * 109.80141 * 60.37900 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 1.3448 -2.1615 4.4124 10 1 3.6308 -1.7566 3.7120 11 1 2.4872 -0.1401 5.1121 12 6 2.0323 -0.7105 -1.2304 13 8 1.4340 -1.6734 -1.6614 14 7 3.1465 -0.2758 -1.8519 15 6 3.7014 -0.7871 -3.1095 16 6 4.9466 0.0039 -3.4140 17 6 5.8445 -0.0654 -4.4687 18 6 6.9231 0.8053 -4.4760 19 6 7.0645 1.7061 -3.4371 20 7 6.1911 1.7429 -2.4517 21 6 5.1499 0.9288 -2.4098 22 6 4.0393 0.7946 -1.3971 23 1 -0.3633 0.6081 0.8284 24 1 -0.3633 0.4133 -0.9409 25 1 -0.3634 -1.0215 0.1125 26 1 0.7081 1.1609 3.4844 27 1 3.9488 -1.8432 -3.0020 28 1 2.9771 -0.6561 -3.9134 29 1 5.7063 -0.7807 -5.2660 30 1 7.6422 0.7802 -5.2814 31 1 7.9016 2.3885 -3.4334 32 1 3.4869 1.7317 -1.3276 33 1 4.4562 0.5388 -0.4230 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598941640.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:09 Heat of formation + Delta-G solvation = -11.738301 kcal Electronic energy + Delta-G solvation = -17375.513795 eV Core-core repulsion = 14593.491821 eV Total energy + Delta-G solvation = -2782.021974 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.06211 -40.37790 -37.58411 -35.85285 -33.79062 -32.72892 -31.91955 -29.36612 -27.44065 -27.06311 -24.21122 -23.18028 -22.78935 -20.40050 -18.59693 -18.32983 -17.47023 -17.13372 -17.07249 -16.60185 -16.40077 -15.31727 -15.27460 -14.54659 -14.23486 -14.06849 -13.92014 -13.83010 -13.67683 -13.55343 -12.93770 -12.80416 -12.77750 -12.59819 -12.24799 -12.15816 -11.13866 -10.78624 -10.73783 -10.47936 -10.35740 -10.31545 -9.43574 -8.19812 -6.34685 0.01199 0.26333 1.41311 1.42362 1.51709 1.71716 1.85154 2.42129 2.71133 2.79983 3.09909 3.27854 3.83861 3.98373 4.08552 4.13108 4.35567 4.44165 4.47682 4.51875 4.64680 4.68820 4.74703 4.93314 4.99901 5.08706 5.14425 5.27621 5.45016 5.65062 5.69527 5.81932 6.08463 6.41075 6.67520 6.92980 7.20479 7.34629 8.86440 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028478 B = 0.006171 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.972249 B = 4536.083913 C = 5035.596082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.033 3.967 3 H 0.041 0.959 4 C -0.532 4.532 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.905 5.905 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.273 1.273 12 C 0.554 3.446 13 O -0.583 6.583 14 N -0.623 5.623 15 C 0.149 3.851 16 C -0.166 4.166 17 C -0.049 4.049 18 C -0.155 4.155 19 C 0.100 3.900 20 N -0.500 5.500 21 C 0.096 3.904 22 C 0.162 3.838 23 H 0.073 0.927 24 H 0.027 0.973 25 H 0.025 0.975 26 H 0.268 0.732 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.169 0.831 30 H 0.185 0.815 31 H 0.194 0.806 32 H 0.088 0.912 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.687 2.142 -13.604 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.012 3.988 3 H 0.059 0.941 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.173 4.173 7 N -0.543 5.543 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.198 1.198 12 C 0.347 3.653 13 O -0.463 6.463 14 N -0.357 5.357 15 C 0.026 3.974 16 C -0.168 4.168 17 C -0.075 4.075 18 C -0.174 4.174 19 C -0.058 4.058 20 N -0.209 5.209 21 C -0.041 4.041 22 C 0.038 3.962 23 H 0.092 0.908 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.187 0.813 30 H 0.203 0.797 31 H 0.210 0.790 32 H 0.106 0.894 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.296 2.329 -12.966 18.020 hybrid contribution -0.160 -0.976 0.411 1.071 sum 12.136 1.353 -12.555 17.514 Atomic orbital electron populations 1.21465 0.95865 1.00017 0.99611 1.18836 0.94770 0.96010 0.89148 0.94129 1.20861 1.32907 1.12676 0.90536 0.93765 1.25598 0.94731 0.95477 1.01460 1.69969 1.36291 1.23273 1.24732 0.85529 0.78732 0.78463 0.78805 1.20162 1.19659 1.19837 1.21333 0.77138 0.82936 0.83902 1.90526 1.58730 1.29050 1.67971 1.48035 1.25582 1.37503 1.24621 1.20146 0.92580 0.97734 0.86891 1.21257 0.98234 0.99272 0.98086 1.21377 0.91633 0.98402 0.96073 1.22564 0.98682 0.95314 1.00841 1.23407 0.96454 0.97458 0.88474 1.66774 1.02680 1.23654 1.27834 1.21209 0.94071 0.93422 0.95363 1.19926 0.88588 0.91666 0.96002 0.90832 0.95405 0.95569 0.92230 0.90322 0.89530 0.81319 0.79739 0.78963 0.89359 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.74 8.45 71.98 0.61 -5.13 16 2 C 0.03 1.75 2.30 -12.29 -0.03 1.72 16 3 H 0.04 2.13 6.98 -2.39 -0.02 2.12 16 4 C -0.53 -29.84 8.54 25.60 0.22 -29.62 16 5 H 0.04 2.55 7.74 -2.91 -0.02 2.52 16 6 C 0.03 1.54 5.30 84.66 0.45 1.99 16 7 N -0.90 -50.43 11.39 21.45 0.24 -50.19 16 8 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 C 0.55 26.99 6.78 87.66 0.59 27.58 16 13 O -0.58 -31.05 16.80 -3.02 -0.05 -31.10 16 14 N -0.62 -25.08 3.34 -829.54 -2.77 -27.85 16 15 C 0.15 4.74 6.91 85.58 0.59 5.33 16 16 C -0.17 -4.44 6.24 -19.83 -0.12 -4.56 16 17 C -0.05 -0.87 10.17 22.47 0.23 -0.64 16 18 C -0.15 -2.16 10.12 22.36 0.23 -1.93 16 19 C 0.10 1.86 11.18 84.71 0.95 2.80 16 20 N -0.50 -14.17 10.36 -183.67 -1.90 -16.07 16 21 C 0.10 2.99 7.40 42.51 0.31 3.31 16 22 C 0.16 5.95 6.22 85.67 0.53 6.48 16 23 H 0.07 3.95 6.26 -2.39 -0.01 3.94 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.03 1.37 8.05 -2.39 -0.02 1.35 16 26 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 27 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.19 0.92 8.06 -2.91 -0.02 0.90 16 31 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.09 3.21 7.71 -2.38 -0.02 3.19 16 33 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -69.09 284.16 3.22 -65.87 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.11 Total: 6.57 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 4.56 Total: 7.33 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -4.43 Total: -94.11 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.05 Total: -31.10 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.09 3.22 -65.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598941640.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.135 kcal (2) G-P(sol) polarization free energy of solvation -69.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds