Wall clock time and date at job start Mon Mar 30 2020 04:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.23459 * 2 1 4 4 C 1.49465 * 109.35667 * 240.36067 * 2 1 3 5 5 O 1.21287 * 116.70357 * 94.24595 * 4 2 1 6 6 N 1.30167 * 126.58657 * 274.28081 * 4 2 1 7 7 C 1.37461 * 136.76254 * 340.50243 * 6 4 2 8 8 C 1.40704 * 114.93242 * 195.86169 * 7 6 4 9 9 C 1.37329 * 121.38642 * 179.70040 * 8 7 6 10 10 C 1.38319 * 119.67893 * 359.76353 * 9 8 7 11 11 C 1.37661 * 119.40152 * 0.06484 * 10 9 8 12 12 C 1.37782 * 126.51101 * 15.15184 * 7 6 4 13 13 C 1.49697 * 124.47011 * 0.75521 * 12 7 6 14 14 N 1.43860 * 114.68211 * 325.36304 * 13 12 7 15 15 C 1.36942 * 118.28757 * 255.47666 * 14 13 12 16 16 H 1.07995 * 120.00039 * 144.70225 * 15 14 13 17 17 C 1.38816 * 119.99609 * 324.70360 * 15 14 13 18 18 N 1.31618 * 119.99885 * 158.17236 * 17 15 14 19 19 Si 1.86795 * 120.00318 * 338.17330 * 17 15 14 20 20 H 1.48505 * 109.47267 * 94.46734 * 19 17 15 21 21 H 1.48498 * 109.47398 * 214.47327 * 19 17 15 22 22 H 1.48500 * 109.47100 * 334.47343 * 19 17 15 23 23 H 1.08998 * 109.46902 * 179.64279 * 1 2 3 24 24 H 1.08998 * 109.47077 * 299.63875 * 1 2 3 25 25 H 1.09002 * 109.46909 * 59.63977 * 1 2 3 26 26 H 0.96997 * 111.61992 * 160.20520 * 6 4 2 27 27 H 1.07998 * 119.33560 * 359.45666 * 8 7 6 28 28 H 1.07992 * 120.15690 * 179.74650 * 9 8 7 29 29 H 1.08005 * 120.30516 * 180.02562 * 10 9 8 30 30 H 1.07996 * 119.31890 * 179.97438 * 11 10 9 31 31 H 1.09005 * 108.44090 * 204.01192 * 13 12 7 32 32 H 1.08997 * 108.31181 * 86.61214 * 13 12 7 33 33 H 0.96994 * 120.00057 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8891 1.0292 0.0000 4 6 2.0254 -0.6974 -1.2257 5 8 2.2817 0.0006 -2.1838 6 7 2.2089 -1.9781 -1.3689 7 6 2.3724 -3.0648 -0.5432 8 6 2.8855 -4.2148 -1.1709 9 6 3.1069 -5.3742 -0.4690 10 6 2.8269 -5.4194 0.8848 11 6 2.3278 -4.2987 1.5094 12 6 2.0984 -3.1178 0.8061 13 6 1.5507 -1.9764 1.6048 14 7 2.0114 -0.6779 1.1911 15 6 2.9535 -0.0481 1.9601 16 1 3.7122 0.5619 1.4927 17 6 2.9331 -0.1940 3.3404 18 7 4.0255 0.0241 4.0414 19 14 1.3553 -0.6998 4.2030 20 1 1.3443 -2.1729 4.3911 21 1 1.2785 -0.0312 5.5267 22 1 0.1887 -0.2977 3.3769 23 1 -0.3633 -1.0276 -0.0064 24 1 -0.3633 0.5082 0.8932 25 1 -0.3633 0.5194 -0.8868 26 1 2.2335 -2.2332 -2.3044 27 1 3.1063 -4.1868 -2.2277 28 1 3.4976 -6.2465 -0.9717 29 1 2.9976 -6.3258 1.4467 30 1 2.1092 -4.3356 2.5663 31 1 1.8256 -2.1232 2.6494 32 1 0.4635 -1.9965 1.5298 33 1 4.0112 -0.0775 5.0059 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598948465.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:10 Heat of formation + Delta-G solvation = 32.744307 kcal Electronic energy + Delta-G solvation = -18312.950452 eV Core-core repulsion = 15532.857388 eV Total energy + Delta-G solvation = -2780.093063 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68633 -38.56753 -36.58402 -34.77214 -32.27046 -31.81099 -29.87249 -29.11557 -26.04731 -24.69662 -23.31336 -22.33415 -20.62200 -19.39704 -17.40521 -17.31997 -16.25012 -15.70869 -15.40892 -14.96113 -14.52094 -14.35641 -13.96438 -13.26905 -13.15658 -12.85138 -12.55309 -12.33695 -12.00031 -11.85536 -11.56101 -11.18390 -11.06177 -10.62831 -10.53699 -10.41156 -10.16961 -9.82154 -9.61840 -8.69791 -8.44784 -7.61115 -7.17977 -6.14341 -3.61335 1.53572 1.64891 3.02967 3.16040 3.35353 3.38122 3.54249 4.12332 4.34709 4.74005 5.04216 5.05580 5.14701 5.15047 5.38045 5.60936 5.62664 5.72472 5.78137 5.94967 6.08027 6.13677 6.19619 6.35145 6.39308 6.43577 6.58090 6.70342 6.83265 7.08613 7.17315 7.87758 7.95684 8.17826 8.42271 8.81725 9.51981 9.78131 10.99965 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018606 B = 0.012029 C = 0.008653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.494504 B = 2327.129598 C = 3235.162327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 H 0.115 0.885 4 C 0.519 3.481 5 O -0.559 6.559 6 N -0.646 5.646 7 C 0.186 3.814 8 C -0.170 4.170 9 C -0.100 4.100 10 C -0.148 4.148 11 C -0.087 4.087 12 C -0.115 4.115 13 C 0.169 3.831 14 N -0.584 5.584 15 C -0.290 4.290 16 H 0.083 0.917 17 C 0.043 3.957 18 N -0.889 5.889 19 Si 0.875 3.125 20 H -0.283 1.283 21 H -0.297 1.297 22 H -0.264 1.264 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.384 0.616 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.365 -9.426 -6.409 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 H 0.133 0.867 4 C 0.307 3.693 5 O -0.437 6.437 6 N -0.283 5.283 7 C 0.089 3.911 8 C -0.190 4.190 9 C -0.118 4.118 10 C -0.167 4.167 11 C -0.107 4.107 12 C -0.121 4.121 13 C 0.042 3.958 14 N -0.303 5.303 15 C -0.418 4.418 16 H 0.101 0.899 17 C -0.159 4.159 18 N -0.529 5.529 19 Si 0.704 3.296 20 H -0.211 1.211 21 H -0.225 1.225 22 H -0.189 1.189 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.217 0.783 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.172 -8.790 -6.425 12.515 hybrid contribution -0.591 -0.579 0.299 0.880 sum -6.763 -9.369 -6.126 13.079 Atomic orbital electron populations 1.22173 0.95377 1.01815 1.02490 1.20398 0.93856 0.97173 0.83637 0.86684 1.21030 0.75528 0.80916 0.91797 1.90721 1.50475 1.61203 1.41281 1.42105 1.69037 1.06322 1.10812 1.16935 0.97721 0.85815 0.90636 1.21144 1.04699 0.93203 1.00003 1.20652 0.99773 0.96983 0.94428 1.20902 1.02379 0.98522 0.94886 1.21119 0.97885 0.91948 0.99707 1.20447 1.02064 0.97530 0.92018 1.19581 0.96258 0.82671 0.97246 1.43191 1.47900 1.13102 1.26152 1.18897 1.05458 1.29508 0.87940 0.89893 1.25408 0.96586 0.97647 0.96246 1.69858 1.26135 1.49782 1.07100 0.87037 0.86174 0.77355 0.79065 1.21122 1.22458 1.18888 0.92965 0.90856 0.92261 0.78337 0.86339 0.86106 0.86164 0.86085 0.89916 0.93741 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.82 37.16 0.33 -2.37 16 2 C 0.16 3.27 3.01 -70.34 -0.21 3.06 16 3 H 0.12 2.44 7.79 -51.93 -0.40 2.04 16 4 C 0.52 10.42 6.89 -13.58 -0.09 10.33 16 5 O -0.56 -12.22 17.52 5.55 0.10 -12.12 16 6 N -0.65 -11.49 4.73 -11.64 -0.06 -11.55 16 7 C 0.19 3.26 6.69 -84.58 -0.57 2.70 16 8 C -0.17 -2.46 9.52 -38.98 -0.37 -2.83 16 9 C -0.10 -1.32 10.03 -39.88 -0.40 -1.72 16 10 C -0.15 -2.07 10.06 -39.76 -0.40 -2.47 16 11 C -0.09 -1.46 9.43 -39.38 -0.37 -1.83 16 12 C -0.11 -2.18 5.80 -104.86 -0.61 -2.79 16 13 C 0.17 3.57 3.70 -7.08 -0.03 3.54 16 14 N -0.58 -13.45 2.14 -172.61 -0.37 -13.82 16 15 C -0.29 -7.87 9.65 -15.06 -0.15 -8.02 16 16 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 17 C 0.04 1.18 5.18 -17.43 -0.09 1.09 16 18 N -0.89 -26.18 13.97 55.49 0.78 -25.41 16 19 Si 0.87 20.69 24.90 -169.99 -4.23 16.46 16 20 H -0.28 -6.37 6.69 56.52 0.38 -5.99 16 21 H -0.30 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 23 H 0.05 0.84 6.98 -51.93 -0.36 0.48 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.38 5.86 7.55 -40.82 -0.31 5.55 16 27 H 0.12 1.41 7.75 -52.49 -0.41 1.00 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 30 H 0.12 1.93 7.82 -52.49 -0.41 1.52 16 31 H 0.08 1.89 2.95 -51.93 -0.15 1.73 16 32 H 0.04 0.87 6.59 -51.93 -0.34 0.53 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 269.16 15.07 4.06 4.06 Total: -1.00 -30.75 269.16 -6.35 -37.10 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -3.66 Total: 6.59 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.96 Total: -1.31 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.35 Total: -50.77 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.10 Total: -12.12 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.23 Total: 16.46 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.75 -6.35 -37.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598948465.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.844 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds