Wall clock time and date at job start Mon Mar 30 2020 04:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.23459 * 2 1 4 4 C 1.49465 * 109.35667 * 240.36067 * 2 1 3 5 5 O 1.21287 * 116.70357 * 94.24595 * 4 2 1 6 6 N 1.30167 * 126.58657 * 274.28081 * 4 2 1 7 7 C 1.37461 * 136.76254 * 340.50243 * 6 4 2 8 8 C 1.40704 * 114.93242 * 195.86169 * 7 6 4 9 9 C 1.37329 * 121.38642 * 179.70040 * 8 7 6 10 10 C 1.38319 * 119.67893 * 359.76353 * 9 8 7 11 11 C 1.37661 * 119.40152 * 0.06484 * 10 9 8 12 12 C 1.37782 * 126.51101 * 15.15184 * 7 6 4 13 13 C 1.49697 * 124.47011 * 0.75521 * 12 7 6 14 14 N 1.43860 * 114.68211 * 325.36304 * 13 12 7 15 15 C 1.36942 * 118.28757 * 255.47666 * 14 13 12 16 16 H 1.07995 * 120.00039 * 144.70225 * 15 14 13 17 17 C 1.38816 * 119.99609 * 324.70360 * 15 14 13 18 18 N 1.31618 * 119.99885 * 158.17236 * 17 15 14 19 19 Si 1.86795 * 120.00318 * 338.17330 * 17 15 14 20 20 H 1.48505 * 109.47267 * 94.46734 * 19 17 15 21 21 H 1.48498 * 109.47398 * 214.47327 * 19 17 15 22 22 H 1.48500 * 109.47100 * 334.47343 * 19 17 15 23 23 H 1.08998 * 109.46902 * 179.64279 * 1 2 3 24 24 H 1.08998 * 109.47077 * 299.63875 * 1 2 3 25 25 H 1.09002 * 109.46909 * 59.63977 * 1 2 3 26 26 H 0.96997 * 111.61992 * 160.20520 * 6 4 2 27 27 H 1.07998 * 119.33560 * 359.45666 * 8 7 6 28 28 H 1.07992 * 120.15690 * 179.74650 * 9 8 7 29 29 H 1.08005 * 120.30516 * 180.02562 * 10 9 8 30 30 H 1.07996 * 119.31890 * 179.97438 * 11 10 9 31 31 H 1.09005 * 108.44090 * 204.01192 * 13 12 7 32 32 H 1.08997 * 108.31181 * 86.61214 * 13 12 7 33 33 H 0.96994 * 120.00057 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8891 1.0292 0.0000 4 6 2.0254 -0.6974 -1.2257 5 8 2.2817 0.0006 -2.1838 6 7 2.2089 -1.9781 -1.3689 7 6 2.3724 -3.0648 -0.5432 8 6 2.8855 -4.2148 -1.1709 9 6 3.1069 -5.3742 -0.4690 10 6 2.8269 -5.4194 0.8848 11 6 2.3278 -4.2987 1.5094 12 6 2.0984 -3.1178 0.8061 13 6 1.5507 -1.9764 1.6048 14 7 2.0114 -0.6779 1.1911 15 6 2.9535 -0.0481 1.9601 16 1 3.7122 0.5619 1.4927 17 6 2.9331 -0.1940 3.3404 18 7 4.0255 0.0241 4.0414 19 14 1.3553 -0.6998 4.2030 20 1 1.3443 -2.1729 4.3911 21 1 1.2785 -0.0312 5.5267 22 1 0.1887 -0.2977 3.3769 23 1 -0.3633 -1.0276 -0.0064 24 1 -0.3633 0.5082 0.8932 25 1 -0.3633 0.5194 -0.8868 26 1 2.2335 -2.2332 -2.3044 27 1 3.1063 -4.1868 -2.2277 28 1 3.4976 -6.2465 -0.9717 29 1 2.9976 -6.3258 1.4467 30 1 2.1092 -4.3356 2.5663 31 1 1.8256 -2.1232 2.6494 32 1 0.4635 -1.9965 1.5298 33 1 4.0112 -0.0775 5.0059 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598948465.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:10 Heat of formation + Delta-G solvation = 11.994506 kcal Electronic energy + Delta-G solvation = -18313.850230 eV Core-core repulsion = 15532.857388 eV Total energy + Delta-G solvation = -2780.992842 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.16004 -39.92398 -38.27592 -36.17046 -34.25556 -33.20915 -31.40582 -30.50272 -27.61083 -26.31203 -24.96422 -23.60603 -22.17369 -20.81859 -19.21898 -18.77702 -17.87372 -17.32491 -16.89572 -16.46331 -16.02517 -15.78350 -15.41598 -14.83873 -14.75079 -14.38703 -14.16040 -13.87980 -13.42820 -13.36390 -13.00221 -12.76404 -12.43480 -12.23749 -12.13825 -12.02048 -11.77097 -11.62530 -11.24098 -10.69696 -9.67339 -9.08107 -8.90260 -8.27158 -5.73170 0.26272 0.44298 1.27782 1.41500 1.51712 1.54797 2.15445 2.35013 2.85065 2.97632 3.18494 3.56162 3.89519 3.93685 4.12846 4.17767 4.26900 4.40519 4.49763 4.61449 4.70400 4.72149 4.87013 4.93437 5.05652 5.14075 5.21407 5.52468 5.63831 5.74008 5.83004 6.01227 6.05618 6.51886 6.80253 6.95601 7.49344 7.77278 8.91509 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018606 B = 0.012029 C = 0.008653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.494504 B = 2327.129598 C = 3235.162327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.151 3.849 3 H 0.094 0.906 4 C 0.519 3.481 5 O -0.586 6.586 6 N -0.638 5.638 7 C 0.159 3.841 8 C -0.164 4.164 9 C -0.089 4.089 10 C -0.137 4.137 11 C -0.106 4.106 12 C -0.146 4.146 13 C 0.167 3.833 14 N -0.591 5.591 15 C -0.286 4.286 16 H 0.035 0.965 17 C -0.009 4.009 18 N -0.941 5.941 19 Si 0.943 3.057 20 H -0.263 1.263 21 H -0.304 1.304 22 H -0.249 1.249 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.397 0.603 27 H 0.147 0.853 28 H 0.163 0.837 29 H 0.153 0.847 30 H 0.122 0.878 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.775 -12.481 -7.311 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.041 3.959 3 H 0.112 0.888 4 C 0.307 3.693 5 O -0.466 6.466 6 N -0.275 5.275 7 C 0.063 3.937 8 C -0.185 4.185 9 C -0.108 4.108 10 C -0.156 4.156 11 C -0.125 4.125 12 C -0.151 4.151 13 C 0.042 3.958 14 N -0.313 5.313 15 C -0.415 4.415 16 H 0.053 0.947 17 C -0.206 4.206 18 N -0.583 5.583 19 Si 0.769 3.231 20 H -0.189 1.189 21 H -0.233 1.233 22 H -0.172 1.172 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.232 0.768 27 H 0.165 0.835 28 H 0.181 0.819 29 H 0.171 0.829 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.609 -11.901 -7.357 15.927 hybrid contribution -0.040 0.265 0.492 0.561 sum -7.649 -11.636 -6.865 15.525 Atomic orbital electron populations 1.22061 0.92198 1.02834 1.03505 1.20487 0.96314 0.96093 0.82977 0.88811 1.20789 0.75566 0.81763 0.91168 1.90705 1.51956 1.62026 1.41940 1.41901 1.68070 1.05703 1.11835 1.17220 0.99356 0.86627 0.90508 1.21503 1.03132 0.92302 1.01519 1.21179 0.97795 0.97675 0.94107 1.21327 1.00124 0.98557 0.95602 1.21267 0.98924 0.92337 0.99962 1.20349 1.04247 0.97634 0.92880 1.19548 0.97222 0.82380 0.96642 1.43157 1.47539 1.14242 1.26324 1.18665 1.05184 1.29091 0.88572 0.94749 1.26053 0.99593 0.98245 0.96746 1.69992 1.28468 1.52423 1.07381 0.85933 0.81884 0.78090 0.77198 1.18907 1.23262 1.17227 0.91853 0.90940 0.90108 0.76827 0.83505 0.81943 0.82907 0.86041 0.91867 0.92130 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.80 8.82 71.98 0.63 -4.17 16 2 C 0.15 6.28 3.01 44.09 0.13 6.41 16 3 H 0.09 4.20 7.79 -2.39 -0.02 4.19 16 4 C 0.52 20.85 6.89 87.97 0.61 21.46 16 5 O -0.59 -25.81 17.52 -3.05 -0.05 -25.87 16 6 N -0.64 -21.96 4.73 -311.62 -1.48 -23.43 16 7 C 0.16 5.27 6.69 38.75 0.26 5.53 16 8 C -0.16 -4.13 9.52 22.66 0.22 -3.91 16 9 C -0.09 -1.90 10.03 22.07 0.22 -1.68 16 10 C -0.14 -3.27 10.06 22.15 0.22 -3.05 16 11 C -0.11 -3.30 9.43 22.40 0.21 -3.09 16 12 C -0.15 -5.34 5.80 -20.02 -0.12 -5.45 16 13 C 0.17 6.95 3.70 85.81 0.32 7.27 16 14 N -0.59 -27.67 2.14 -700.00 -1.50 -29.17 16 15 C -0.29 -16.23 9.65 84.03 0.81 -15.42 16 16 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 17 C -0.01 -0.49 5.18 84.86 0.44 -0.05 16 18 N -0.94 -57.60 13.97 21.65 0.30 -57.30 16 19 Si 0.94 43.27 24.90 68.60 1.71 44.97 16 20 H -0.26 -11.08 6.69 99.48 0.67 -10.42 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.25 -10.66 7.11 99.48 0.71 -9.95 16 23 H 0.06 1.91 6.98 -2.39 -0.02 1.90 16 24 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.40 11.42 7.55 -92.71 -0.70 10.72 16 27 H 0.15 2.81 7.75 -2.91 -0.02 2.79 16 28 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.12 3.66 7.82 -2.91 -0.02 3.64 16 31 H 0.06 2.84 2.95 -2.38 -0.01 2.83 16 32 H 0.06 2.27 6.59 -2.39 -0.02 2.25 16 33 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -69.67 269.16 3.33 -66.33 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.40 Total: 20.60 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 3.96 Total: 3.86 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -2.67 Total: -109.90 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.87 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.71 Total: 44.97 kcal Total: -69.67 3.33 -66.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598948465.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.326 kcal (2) G-P(sol) polarization free energy of solvation -69.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds