Wall clock time and date at job start Mon Mar 30 2020 04:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47139 * 6.82470 * 3 2 1 5 5 C 1.36878 * 119.99984 * 266.25006 * 4 3 2 6 6 H 1.07995 * 120.00307 * 198.11575 * 5 4 3 7 7 C 1.39016 * 120.00044 * 18.10911 * 5 4 3 8 8 N 1.31395 * 119.99641 * 13.55936 * 7 5 4 9 9 Si 1.86797 * 120.00438 * 193.56131 * 7 5 4 10 10 H 1.48508 * 109.46823 * 59.99839 * 9 7 5 11 11 H 1.48493 * 109.47441 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47142 * 300.00247 * 9 7 5 13 13 C 1.34773 * 120.00515 * 86.25475 * 4 3 2 14 14 O 1.21741 * 120.00272 * 174.35264 * 13 4 3 15 15 C 1.46556 * 119.99550 * 354.34361 * 13 4 3 16 16 C 1.37993 * 126.24003 * 351.83344 * 15 13 4 17 17 C 1.39803 * 107.08189 * 180.26075 * 16 15 13 18 18 C 1.35485 * 107.88149 * 0.02562 * 17 16 15 19 19 N 1.35592 * 108.88024 * 0.02562 * 18 17 16 20 20 C 1.46502 * 125.68140 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.46657 * 265.83161 * 20 19 18 22 22 H 4.40639 * 5.51386 * 180.02562 * 4 1 2 23 23 H 1.08997 * 109.46694 * 246.82024 * 3 2 1 24 24 H 1.09001 * 109.46926 * 126.82201 * 3 2 1 25 25 H 0.96999 * 120.00223 * 179.97438 * 8 7 5 26 26 H 1.07996 * 126.45705 * 0.24612 * 16 15 13 27 27 H 1.07999 * 126.06345 * 180.02562 * 17 16 15 28 28 H 1.08002 * 125.56243 * 180.02562 * 18 17 16 29 29 H 1.09006 * 109.47100 * 25.82725 * 20 19 18 30 30 H 1.08991 * 109.47237 * 145.83240 * 20 19 18 31 31 H 1.08996 * 109.47585 * 65.00935 * 21 20 19 32 32 H 1.09002 * 109.46824 * 185.00905 * 21 20 19 33 33 H 1.08997 * 109.47214 * 305.00885 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3705 -0.1641 5 6 3.4365 -2.1259 0.9368 6 1 4.0585 -3.0030 0.8360 7 6 2.9422 -1.7641 2.1847 8 7 1.9830 -0.8710 2.2776 9 14 3.6416 -2.5476 3.7294 10 1 5.0944 -2.2528 3.8197 11 1 2.9490 -1.9959 4.9215 12 1 3.4373 -4.0175 3.6750 13 6 3.2880 -1.8882 -1.3990 14 8 3.7902 -2.9882 -1.5400 15 6 2.8495 -1.1270 -2.5721 16 6 2.1277 0.0491 -2.5583 17 6 1.9243 0.4217 -3.8904 18 6 2.5112 -0.5117 -4.6777 19 7 3.0762 -1.4588 -3.8888 20 6 3.8079 -2.6375 -4.3593 21 6 2.8523 -3.8291 -4.4478 22 1 -1.0498 -0.0004 -0.0002 23 1 3.0091 0.4053 0.9447 24 1 3.0090 0.6167 -0.8227 25 1 1.6378 -0.6187 3.1482 26 1 1.7844 0.5811 -1.6835 27 1 1.3935 1.2982 -4.2314 28 1 2.5266 -0.5029 -5.7576 29 1 4.2284 -2.4350 -5.3444 30 1 4.6126 -2.8682 -3.6613 31 1 2.0985 -3.6345 -5.2106 32 1 3.4132 -4.7257 -4.7118 33 1 2.3646 -3.9761 -3.4842 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701243198.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:59 Heat of formation + Delta-G solvation = 107.781500 kcal Electronic energy + Delta-G solvation = -18014.671925 eV Core-core repulsion = 15237.832718 eV Total energy + Delta-G solvation = -2776.839207 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78605 -38.08686 -35.42000 -33.57479 -32.23983 -31.22950 -28.80565 -28.66566 -26.33848 -24.80362 -23.06705 -21.24597 -20.15115 -18.51596 -17.80339 -16.77389 -16.30531 -15.46643 -14.65106 -14.47421 -14.13154 -13.91789 -13.70925 -13.39118 -12.86065 -12.53600 -12.28892 -11.80272 -11.72646 -11.62610 -11.46653 -11.12108 -10.85770 -10.64400 -10.42718 -10.24128 -9.36412 -9.24562 -8.84901 -8.48383 -8.13219 -7.85268 -7.51046 -6.32856 -3.88886 2.31686 3.18606 3.22162 3.23939 3.36106 3.39092 3.87895 4.06620 4.19976 4.42468 4.98055 5.07100 5.10160 5.41772 5.44570 5.57190 5.61921 5.83455 5.87331 5.99132 6.09682 6.23555 6.40844 6.49941 6.73353 6.83112 6.88585 7.12169 7.41380 7.51276 7.67528 7.85072 8.05888 8.42287 8.90354 9.09415 9.31524 9.89373 10.64357 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.008424 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.439124 B = 3323.043121 C = 4072.409370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.101 4.101 3 C 0.215 3.785 4 N -0.419 5.419 5 C -0.307 4.307 6 H 0.106 0.894 7 C 0.030 3.970 8 N -0.863 5.863 9 Si 0.930 3.070 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.508 3.492 14 O -0.594 6.594 15 C -0.009 4.009 16 C -0.188 4.188 17 C -0.211 4.211 18 C -0.017 4.017 19 N -0.415 5.415 20 C 0.104 3.896 21 C -0.159 4.159 22 H 0.198 0.802 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.271 0.729 26 H 0.167 0.833 27 H 0.131 0.869 28 H 0.156 0.844 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 2.824 -8.852 9.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.102 4.102 3 C 0.092 3.908 4 N -0.135 5.135 5 C -0.435 4.435 6 H 0.123 0.877 7 C -0.175 4.175 8 N -0.501 5.501 9 Si 0.757 3.243 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.299 3.701 14 O -0.482 6.482 15 C -0.123 4.123 16 C -0.213 4.213 17 C -0.235 4.235 18 C -0.150 4.150 19 N -0.090 5.090 20 C -0.017 4.017 21 C -0.217 4.217 22 H 0.215 0.785 23 H 0.129 0.871 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.184 0.816 27 H 0.149 0.851 28 H 0.173 0.827 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.654 2.040 -8.822 9.078 hybrid contribution -0.263 -0.297 0.783 0.878 sum 0.392 1.742 -8.039 8.235 Atomic orbital electron populations 1.24222 0.95346 1.01708 1.06872 1.22777 0.94148 0.98610 0.94705 1.18996 0.84371 0.84665 1.02772 1.43323 1.54842 1.11145 1.04220 1.19670 1.29500 1.10288 0.84038 0.87650 1.25385 0.95143 0.97372 0.99573 1.70004 1.23060 1.31684 1.25317 0.85932 0.79007 0.79374 0.80011 1.19801 1.20895 1.19857 1.16809 0.85471 0.85690 0.82163 1.90601 1.50098 1.21750 1.85703 1.20623 1.08196 0.98904 0.84576 1.22531 1.03300 0.97100 0.98350 1.20753 1.07877 1.01538 0.93372 1.21748 1.04530 0.92513 0.96236 1.44012 1.40942 1.18935 1.05082 1.21843 0.95728 0.83919 1.00225 1.22035 0.99466 0.97075 1.03147 0.78501 0.87089 0.90231 0.91853 0.81610 0.85075 0.82703 0.90471 0.87923 0.93118 0.91392 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.60 19.25 29.55 0.57 -5.04 16 2 C -0.10 -2.31 8.35 -37.12 -0.31 -2.62 16 3 C 0.21 4.95 4.70 -6.83 -0.03 4.91 16 4 N -0.42 -10.91 2.59 -119.47 -0.31 -11.22 16 5 C -0.31 -8.44 9.39 -15.01 -0.14 -8.58 16 6 H 0.11 3.01 7.31 -52.49 -0.38 2.63 16 7 C 0.03 0.77 5.07 -17.45 -0.09 0.68 16 8 N -0.86 -22.36 8.94 55.50 0.50 -21.87 16 9 Si 0.93 20.39 29.57 -169.99 -5.03 15.36 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.51 13.01 7.53 -12.91 -0.10 12.91 16 14 O -0.59 -16.24 13.99 5.15 0.07 -16.17 16 15 C -0.01 -0.19 6.71 -81.98 -0.55 -0.74 16 16 C -0.19 -3.77 8.13 -39.09 -0.32 -4.08 16 17 C -0.21 -3.58 10.81 -39.98 -0.43 -4.01 16 18 C -0.02 -0.27 11.37 -16.87 -0.19 -0.46 16 19 N -0.42 -7.72 2.76 -112.85 -0.31 -8.03 16 20 C 0.10 1.67 6.09 -4.04 -0.02 1.65 16 21 C -0.16 -2.45 10.14 37.16 0.38 -2.07 16 22 H 0.20 3.47 7.80 -54.10 -0.42 3.05 16 23 H 0.11 2.65 6.37 -51.93 -0.33 2.32 16 24 H 0.08 1.64 5.14 -51.93 -0.27 1.37 16 25 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 26 H 0.17 3.34 3.09 -52.49 -0.16 3.18 16 27 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 28 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.08 0.95 8.13 -51.93 -0.42 0.52 16 30 H 0.10 1.87 6.77 -51.93 -0.35 1.52 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.40 7.68 -51.93 -0.40 1.00 16 LS Contribution 279.72 15.07 4.22 4.22 Total: -1.00 -30.78 279.72 -5.67 -36.44 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -3.56 Total: 8.73 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.24 Total: -7.46 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.12 Total: -41.12 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.07 Total: -16.17 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.78 -5.67 -36.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701243198.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.226 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds