Wall clock time and date at job start Mon Mar 30 2020 04:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47139 * 6.82470 * 3 2 1 5 5 C 1.36878 * 119.99984 * 266.25006 * 4 3 2 6 6 H 1.07995 * 120.00307 * 198.11575 * 5 4 3 7 7 C 1.39016 * 120.00044 * 18.10911 * 5 4 3 8 8 N 1.31395 * 119.99641 * 13.55936 * 7 5 4 9 9 Si 1.86797 * 120.00438 * 193.56131 * 7 5 4 10 10 H 1.48508 * 109.46823 * 59.99839 * 9 7 5 11 11 H 1.48493 * 109.47441 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47142 * 300.00247 * 9 7 5 13 13 C 1.34773 * 120.00515 * 86.25475 * 4 3 2 14 14 O 1.21741 * 120.00272 * 174.35264 * 13 4 3 15 15 C 1.46556 * 119.99550 * 354.34361 * 13 4 3 16 16 C 1.37993 * 126.24003 * 351.83344 * 15 13 4 17 17 C 1.39803 * 107.08189 * 180.26075 * 16 15 13 18 18 C 1.35485 * 107.88149 * 0.02562 * 17 16 15 19 19 N 1.35592 * 108.88024 * 0.02562 * 18 17 16 20 20 C 1.46502 * 125.68140 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.46657 * 265.83161 * 20 19 18 22 22 H 4.40639 * 5.51386 * 180.02562 * 4 1 2 23 23 H 1.08997 * 109.46694 * 246.82024 * 3 2 1 24 24 H 1.09001 * 109.46926 * 126.82201 * 3 2 1 25 25 H 0.96999 * 120.00223 * 179.97438 * 8 7 5 26 26 H 1.07996 * 126.45705 * 0.24612 * 16 15 13 27 27 H 1.07999 * 126.06345 * 180.02562 * 17 16 15 28 28 H 1.08002 * 125.56243 * 180.02562 * 18 17 16 29 29 H 1.09006 * 109.47100 * 25.82725 * 20 19 18 30 30 H 1.08991 * 109.47237 * 145.83240 * 20 19 18 31 31 H 1.08996 * 109.47585 * 65.00935 * 21 20 19 32 32 H 1.09002 * 109.46824 * 185.00905 * 21 20 19 33 33 H 1.08997 * 109.47214 * 305.00885 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3705 -0.1641 5 6 3.4365 -2.1259 0.9368 6 1 4.0585 -3.0030 0.8360 7 6 2.9422 -1.7641 2.1847 8 7 1.9830 -0.8710 2.2776 9 14 3.6416 -2.5476 3.7294 10 1 5.0944 -2.2528 3.8197 11 1 2.9490 -1.9959 4.9215 12 1 3.4373 -4.0175 3.6750 13 6 3.2880 -1.8882 -1.3990 14 8 3.7902 -2.9882 -1.5400 15 6 2.8495 -1.1270 -2.5721 16 6 2.1277 0.0491 -2.5583 17 6 1.9243 0.4217 -3.8904 18 6 2.5112 -0.5117 -4.6777 19 7 3.0762 -1.4588 -3.8888 20 6 3.8079 -2.6375 -4.3593 21 6 2.8523 -3.8291 -4.4478 22 1 -1.0498 -0.0004 -0.0002 23 1 3.0091 0.4053 0.9447 24 1 3.0090 0.6167 -0.8227 25 1 1.6378 -0.6187 3.1482 26 1 1.7844 0.5811 -1.6835 27 1 1.3935 1.2982 -4.2314 28 1 2.5266 -0.5029 -5.7576 29 1 4.2284 -2.4350 -5.3444 30 1 4.6126 -2.8682 -3.6613 31 1 2.0985 -3.6345 -5.2106 32 1 3.4132 -4.7257 -4.7118 33 1 2.3646 -3.9761 -3.4842 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701243198.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:58 Heat of formation + Delta-G solvation = 89.788081 kcal Electronic energy + Delta-G solvation = -18015.452178 eV Core-core repulsion = 15237.832718 eV Total energy + Delta-G solvation = -2777.619460 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.26893 -39.91320 -37.30623 -35.02684 -34.03056 -33.10624 -30.30873 -30.09853 -28.13870 -26.69653 -24.37217 -22.95878 -21.61424 -20.08549 -19.61749 -18.50244 -17.97311 -17.27431 -16.22366 -16.20190 -15.89948 -15.51363 -15.22245 -14.85069 -14.52527 -14.11595 -13.94629 -13.47188 -13.26907 -13.03610 -12.91301 -12.82469 -12.61097 -12.16484 -12.09475 -11.94220 -11.23861 -11.04241 -10.66272 -10.39124 -9.88790 -9.47774 -8.99482 -8.29771 -5.95442 0.73600 1.40737 1.44041 1.51166 1.87832 2.00272 2.21216 2.28111 2.39909 2.61091 3.12728 3.25148 3.87837 3.89985 4.10041 4.18950 4.29635 4.41957 4.57608 4.59808 4.72505 4.80185 4.95288 5.01363 5.20448 5.32324 5.41066 5.44729 5.45114 5.90871 6.11490 6.17540 6.46012 6.58926 7.09787 7.17435 7.36389 7.95067 8.65191 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.008424 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.439124 B = 3323.043121 C = 4072.409370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.136 4.136 3 C 0.223 3.777 4 N -0.436 5.436 5 C -0.348 4.348 6 H 0.079 0.921 7 C 0.000 4.000 8 N -0.872 5.872 9 Si 0.993 3.007 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.279 1.279 13 C 0.498 3.502 14 O -0.629 6.629 15 C -0.061 4.061 16 C -0.184 4.184 17 C -0.221 4.221 18 C 0.014 3.986 19 N -0.419 5.419 20 C 0.099 3.901 21 C -0.151 4.151 22 H 0.232 0.768 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.274 0.726 26 H 0.160 0.840 27 H 0.164 0.836 28 H 0.208 0.792 29 H 0.128 0.872 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.632 3.859 -10.803 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.138 4.138 3 C 0.101 3.899 4 N -0.152 5.152 5 C -0.475 4.475 6 H 0.097 0.903 7 C -0.203 4.203 8 N -0.509 5.509 9 Si 0.817 3.183 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.205 1.205 13 C 0.290 3.710 14 O -0.519 6.519 15 C -0.174 4.174 16 C -0.210 4.210 17 C -0.244 4.244 18 C -0.120 4.120 19 N -0.093 5.093 20 C -0.021 4.021 21 C -0.209 4.209 22 H 0.249 0.751 23 H 0.113 0.887 24 H 0.116 0.884 25 H 0.085 0.915 26 H 0.177 0.823 27 H 0.182 0.818 28 H 0.225 0.775 29 H 0.146 0.854 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.260 3.100 -10.768 11.208 hybrid contribution -0.029 -0.590 1.248 1.381 sum -0.289 2.510 -9.519 9.849 Atomic orbital electron populations 1.25071 0.96277 1.00054 1.05339 1.22946 0.94592 1.00109 0.96131 1.18944 0.84963 0.83484 1.02539 1.43486 1.55440 1.12078 1.04165 1.19599 1.31228 1.10910 0.85784 0.90341 1.26100 0.95016 0.97697 1.01509 1.70108 1.22989 1.31774 1.26010 0.85004 0.78658 0.78006 0.76657 1.19177 1.19373 1.20473 1.17455 0.84491 0.85759 0.83275 1.90545 1.51536 1.23368 1.86477 1.20207 1.11704 1.00435 0.85036 1.22621 1.02207 0.96190 0.99999 1.21144 1.08494 1.03048 0.91760 1.22626 1.00925 0.90215 0.98272 1.44270 1.40964 1.19922 1.04148 1.22020 0.94892 0.83580 1.01617 1.21967 0.99909 0.97996 1.01031 0.75114 0.88734 0.88423 0.91539 0.82262 0.81804 0.77489 0.85431 0.91217 0.90724 0.89251 0.95879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.39 19.25 74.32 1.43 -8.96 16 2 C -0.14 -6.31 8.35 31.13 0.26 -6.05 16 3 C 0.22 10.64 4.70 84.58 0.40 11.03 16 4 N -0.44 -23.88 2.59 -650.08 -1.68 -25.56 16 5 C -0.35 -20.19 9.39 84.09 0.79 -19.40 16 6 H 0.08 4.84 7.31 -2.91 -0.02 4.81 16 7 C 0.00 0.01 5.07 84.94 0.43 0.44 16 8 N -0.87 -45.89 8.94 21.68 0.19 -45.70 16 9 Si 0.99 42.70 29.57 68.60 2.03 44.73 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 11 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 C 0.50 26.87 7.53 86.41 0.65 27.52 16 14 O -0.63 -36.77 13.99 -4.48 -0.06 -36.83 16 15 C -0.06 -2.69 6.71 40.34 0.27 -2.42 16 16 C -0.18 -7.22 8.13 22.59 0.18 -7.04 16 17 C -0.22 -6.71 10.81 22.01 0.24 -6.48 16 18 C 0.01 0.38 11.37 83.48 0.95 1.33 16 19 N -0.42 -14.85 2.76 -510.94 -1.41 -16.26 16 20 C 0.10 3.04 6.09 86.38 0.53 3.57 16 21 C -0.15 -4.49 10.14 71.98 0.73 -3.76 16 22 H 0.23 7.57 7.80 -4.43 -0.03 7.53 16 23 H 0.09 4.72 6.37 -2.39 -0.02 4.70 16 24 H 0.10 4.17 5.14 -2.39 -0.01 4.16 16 25 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 26 H 0.16 6.39 3.09 -2.91 -0.01 6.38 16 27 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 28 H 0.21 3.50 8.06 -2.91 -0.02 3.48 16 29 H 0.13 2.59 8.13 -2.38 -0.02 2.57 16 30 H 0.07 2.61 6.77 -2.39 -0.02 2.59 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.02 0.89 7.68 -2.39 -0.02 0.87 16 Total: -1.00 -71.22 279.72 7.04 -64.18 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 1.12 Total: 25.66 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 6.86 Total: -10.21 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -2.90 Total: -87.53 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.06 Total: -36.83 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -71.22 7.04 -64.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701243198.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.965 kcal (2) G-P(sol) polarization free energy of solvation -71.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds