Wall clock time and date at job start Mon Mar 30 2020 04:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47211 * 33.59281 * 3 2 1 5 5 C 1.52999 * 109.46975 * 153.59320 * 3 2 1 6 6 O 1.42902 * 109.47239 * 54.99960 * 5 3 2 7 7 N 1.46499 * 109.47371 * 273.59224 * 3 2 1 8 8 C 1.39853 * 120.00342 * 154.99752 * 7 3 2 9 9 C 1.39595 * 119.83904 * 359.97438 * 8 7 3 10 10 C 1.38056 * 120.55160 * 180.02562 * 9 8 7 11 11 C 1.38736 * 120.21800 * 0.02562 * 10 9 8 12 12 N 1.38869 * 120.15983 * 179.97438 * 11 10 9 13 13 C 1.41562 * 119.67476 * 359.97438 * 11 10 9 14 14 C 1.41022 * 120.26359 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00597 * 25.62203 * 14 13 11 16 16 C 1.39897 * 119.99669 * 205.62232 * 14 13 11 17 17 N 1.30895 * 119.99721 * 15.40922 * 16 14 13 18 18 Si 1.86800 * 119.99896 * 195.41161 * 16 14 13 19 19 H 1.48495 * 109.47303 * 59.99814 * 18 16 14 20 20 H 1.48503 * 109.46797 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46938 * 299.99737 * 18 16 14 22 22 C 1.38005 * 119.83826 * 180.02562 * 8 7 3 23 23 H 4.18736 * 15.04098 * 0.02562 * 4 2 1 24 24 H 1.09001 * 109.47057 * 174.99554 * 5 3 2 25 25 H 1.08996 * 109.47510 * 294.99763 * 5 3 2 26 26 H 0.96696 * 114.00134 * 179.97438 * 6 5 3 27 27 H 0.97006 * 119.99873 * 335.00339 * 7 3 2 28 28 H 1.07998 * 119.72422 * 359.97438 * 9 8 7 29 29 H 1.07997 * 119.89063 * 179.97438 * 10 9 8 30 30 H 0.97000 * 119.99749 * 180.02562 * 12 11 10 31 31 H 0.96997 * 119.99954 * 0.02562 * 12 11 10 32 32 H 0.97003 * 119.99948 * 180.02562 * 17 16 14 33 33 H 1.07997 * 120.11885 * 0.25162 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.8552 -0.5686 5 6 3.1554 1.2929 -0.6415 6 8 2.5851 2.4164 0.0326 7 7 3.1345 -0.0857 1.3785 8 6 4.4027 -0.6144 1.6392 9 6 5.2002 -1.0594 0.5835 10 6 6.4542 -1.5843 0.8241 11 6 6.9356 -1.6756 2.1220 12 7 8.1970 -2.2043 2.3627 13 6 6.1348 -1.2271 3.1998 14 6 6.6116 -1.3145 4.5240 15 1 7.6743 -1.3186 4.7162 16 6 5.7079 -1.3961 5.5889 17 7 4.4536 -1.6932 5.3614 18 14 6.2914 -1.0808 7.3352 19 1 6.8382 0.2963 7.4334 20 1 5.1493 -1.2285 8.2728 21 1 7.3504 -2.0603 7.6876 22 6 4.8592 -0.6946 2.9391 23 1 -1.0499 -0.0005 -0.0009 24 1 4.2417 1.3344 -0.5618 25 1 2.8671 1.3150 -1.6924 26 1 2.8650 3.2714 -0.3218 27 1 2.5782 0.2238 2.1104 28 1 4.8328 -0.9932 -0.4299 29 1 7.0620 -1.9258 -0.0007 30 1 8.5311 -2.2674 3.2712 31 1 8.7438 -2.5105 1.6225 32 1 3.8269 -1.7494 6.0997 33 1 4.2375 -0.3538 3.7538 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718174037.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:37 Heat of formation + Delta-G solvation = 34.218749 kcal Electronic energy + Delta-G solvation = -17143.785687 eV Core-core repulsion = 14363.756560 eV Total energy + Delta-G solvation = -2780.029127 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.32628 -37.06731 -35.07814 -33.46671 -33.07161 -31.15308 -29.46112 -28.59619 -25.83966 -24.84065 -22.73213 -21.23375 -19.67039 -18.17794 -17.39004 -16.85497 -16.05359 -15.49339 -15.05698 -14.99245 -14.57296 -14.21271 -13.52620 -13.21594 -12.51633 -12.27012 -12.01961 -11.79595 -11.59466 -11.38559 -11.13870 -11.00015 -10.47596 -10.29259 -10.26945 -9.85892 -9.79310 -9.65788 -9.30511 -9.04579 -7.80203 -7.23204 -6.60061 -5.55597 -4.06685 2.91084 2.93047 3.09074 3.13806 3.16216 3.31269 3.47684 4.04079 4.44470 4.54478 4.63698 4.82030 5.41994 5.47489 5.60019 5.79274 5.86858 5.92070 6.20061 6.34722 6.58668 7.09414 7.14100 7.32188 7.48553 7.67617 7.78619 7.84049 7.88939 8.00058 8.12782 8.45291 8.73340 8.89494 8.93345 9.00203 9.25727 9.33538 10.38138 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022391 B = 0.006665 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.204346 B = 4199.850206 C = 4973.512144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.271 3.729 4 H 0.106 0.894 5 C 0.065 3.935 6 O -0.562 6.562 7 N -0.745 5.745 8 C 0.179 3.821 9 C -0.263 4.263 10 C -0.151 4.151 11 C 0.085 3.915 12 N -0.889 5.889 13 C 0.096 3.904 14 C -0.463 4.463 15 H 0.071 0.929 16 C 0.076 3.924 17 N -0.798 5.798 18 Si 0.903 3.097 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.269 1.269 22 C -0.199 4.199 23 H 0.215 0.785 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.371 0.629 27 H 0.394 0.606 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.389 0.611 31 H 0.374 0.626 32 H 0.276 0.724 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 3.683 -7.580 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.171 4.171 3 C 0.164 3.836 4 H 0.123 0.877 5 C -0.015 4.015 6 O -0.366 6.366 7 N -0.379 5.379 8 C 0.081 3.919 9 C -0.286 4.286 10 C -0.176 4.176 11 C -0.016 4.016 12 N -0.431 5.431 13 C 0.091 3.909 14 C -0.494 4.494 15 H 0.089 0.911 16 C -0.140 4.140 17 N -0.425 5.425 18 Si 0.728 3.272 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.194 1.194 22 C -0.223 4.223 23 H 0.232 0.768 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.217 0.783 27 H 0.227 0.773 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.217 0.783 31 H 0.199 0.801 32 H 0.087 0.913 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.886 3.154 -7.265 8.430 hybrid contribution 0.348 0.444 0.741 0.932 sum -2.537 3.598 -6.524 7.870 Atomic orbital electron populations 1.24774 0.95739 1.02349 0.99616 1.23125 0.94307 0.98955 1.00689 1.17610 0.82788 0.95914 0.87288 0.87708 1.22793 0.97851 0.86842 0.94029 1.86548 1.72587 1.16034 1.61480 1.44246 1.17143 1.72408 1.04117 1.17518 0.84154 0.96239 0.93988 1.19592 0.96913 1.16892 0.95234 1.19676 0.96719 1.07634 0.93530 1.17861 0.88095 1.02431 0.93222 1.41809 1.17226 1.74997 1.09116 1.16973 0.91299 0.91299 0.91311 1.19107 0.93715 1.46039 0.90558 0.91107 1.25763 0.94601 0.92723 1.00949 1.69862 1.03975 1.34913 1.33753 0.86465 0.78976 0.79853 0.81863 1.19145 1.20602 1.19361 1.20526 0.99248 1.09720 0.92854 0.76806 0.91876 0.93936 0.78323 0.77274 0.89742 0.89722 0.78339 0.80107 0.91329 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.95 19.25 29.55 0.57 -2.38 16 2 C -0.17 -2.80 12.25 -37.12 -0.45 -3.25 16 3 C 0.27 4.61 2.51 -70.72 -0.18 4.43 16 4 H 0.11 1.74 6.47 -51.93 -0.34 1.40 16 5 C 0.06 0.95 6.76 37.16 0.25 1.20 16 6 O -0.56 -8.45 13.07 -35.23 -0.46 -8.91 16 7 N -0.75 -15.19 5.18 -54.91 -0.28 -15.48 16 8 C 0.18 4.19 6.63 -83.78 -0.56 3.63 16 9 C -0.26 -5.83 8.84 -39.14 -0.35 -6.17 16 10 C -0.15 -3.41 9.86 -39.46 -0.39 -3.80 16 11 C 0.08 2.04 6.79 -83.22 -0.56 1.48 16 12 N -0.89 -18.07 8.98 32.75 0.29 -17.78 16 13 C 0.10 2.56 5.58 -106.66 -0.60 1.97 16 14 C -0.46 -12.19 8.50 -37.91 -0.32 -12.51 16 15 H 0.07 1.76 6.68 -52.49 -0.35 1.41 16 16 C 0.08 1.93 5.18 -17.33 -0.09 1.84 16 17 N -0.80 -21.13 10.88 55.55 0.60 -20.52 16 18 Si 0.90 19.09 29.59 -169.99 -5.03 14.07 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 C -0.20 -5.23 8.51 -38.75 -0.33 -5.56 16 23 H 0.22 2.16 7.80 -54.09 -0.42 1.74 16 24 H 0.06 0.98 7.80 -51.93 -0.41 0.57 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.37 3.74 9.12 45.56 0.42 4.15 16 27 H 0.39 8.22 8.58 -40.82 -0.35 7.87 16 28 H 0.08 1.65 6.17 -52.49 -0.32 1.32 16 29 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.39 7.77 7.04 -40.82 -0.29 7.48 16 31 H 0.37 6.40 8.83 -40.82 -0.36 6.04 16 32 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 33 H 0.12 3.31 6.13 -52.49 -0.32 2.99 16 LS Contribution 288.80 15.07 4.35 4.35 Total: -1.00 -30.22 288.80 -6.25 -36.47 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -2.72 Total: 26.92 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -3.00 Total: -19.11 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.61 Total: -53.78 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.46 Total: -8.91 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.22 -6.25 -36.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718174037.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.688 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds