Wall clock time and date at job start Mon Mar 30 2020 04:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47211 * 33.59281 * 3 2 1 5 5 C 1.52999 * 109.46975 * 153.59320 * 3 2 1 6 6 O 1.42902 * 109.47239 * 54.99960 * 5 3 2 7 7 N 1.46499 * 109.47371 * 273.59224 * 3 2 1 8 8 C 1.39853 * 120.00342 * 154.99752 * 7 3 2 9 9 C 1.39595 * 119.83904 * 359.97438 * 8 7 3 10 10 C 1.38056 * 120.55160 * 180.02562 * 9 8 7 11 11 C 1.38736 * 120.21800 * 0.02562 * 10 9 8 12 12 N 1.38869 * 120.15983 * 179.97438 * 11 10 9 13 13 C 1.41562 * 119.67476 * 359.97438 * 11 10 9 14 14 C 1.41022 * 120.26359 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00597 * 25.62203 * 14 13 11 16 16 C 1.39897 * 119.99669 * 205.62232 * 14 13 11 17 17 N 1.30895 * 119.99721 * 15.40922 * 16 14 13 18 18 Si 1.86800 * 119.99896 * 195.41161 * 16 14 13 19 19 H 1.48495 * 109.47303 * 59.99814 * 18 16 14 20 20 H 1.48503 * 109.46797 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46938 * 299.99737 * 18 16 14 22 22 C 1.38005 * 119.83826 * 180.02562 * 8 7 3 23 23 H 4.18736 * 15.04098 * 0.02562 * 4 2 1 24 24 H 1.09001 * 109.47057 * 174.99554 * 5 3 2 25 25 H 1.08996 * 109.47510 * 294.99763 * 5 3 2 26 26 H 0.96696 * 114.00134 * 179.97438 * 6 5 3 27 27 H 0.97006 * 119.99873 * 335.00339 * 7 3 2 28 28 H 1.07998 * 119.72422 * 359.97438 * 9 8 7 29 29 H 1.07997 * 119.89063 * 179.97438 * 10 9 8 30 30 H 0.97000 * 119.99749 * 180.02562 * 12 11 10 31 31 H 0.96997 * 119.99954 * 0.02562 * 12 11 10 32 32 H 0.97003 * 119.99948 * 180.02562 * 17 16 14 33 33 H 1.07997 * 120.11885 * 0.25162 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.8552 -0.5686 5 6 3.1554 1.2929 -0.6415 6 8 2.5851 2.4164 0.0326 7 7 3.1345 -0.0857 1.3785 8 6 4.4027 -0.6144 1.6392 9 6 5.2002 -1.0594 0.5835 10 6 6.4542 -1.5843 0.8241 11 6 6.9356 -1.6756 2.1220 12 7 8.1970 -2.2043 2.3627 13 6 6.1348 -1.2271 3.1998 14 6 6.6116 -1.3145 4.5240 15 1 7.6743 -1.3186 4.7162 16 6 5.7079 -1.3961 5.5889 17 7 4.4536 -1.6932 5.3614 18 14 6.2914 -1.0808 7.3352 19 1 6.8382 0.2963 7.4334 20 1 5.1493 -1.2285 8.2728 21 1 7.3504 -2.0603 7.6876 22 6 4.8592 -0.6946 2.9391 23 1 -1.0499 -0.0005 -0.0009 24 1 4.2417 1.3344 -0.5618 25 1 2.8671 1.3150 -1.6924 26 1 2.8650 3.2714 -0.3218 27 1 2.5782 0.2238 2.1104 28 1 4.8328 -0.9932 -0.4299 29 1 7.0620 -1.9258 -0.0007 30 1 8.5311 -2.2674 3.2712 31 1 8.7438 -2.5105 1.6225 32 1 3.8269 -1.7494 6.0997 33 1 4.2375 -0.3538 3.7538 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718174037.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:36 Heat of formation + Delta-G solvation = 11.373545 kcal Electronic energy + Delta-G solvation = -17144.776329 eV Core-core repulsion = 14363.756560 eV Total energy + Delta-G solvation = -2781.019769 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96385 -38.49874 -36.49584 -35.33047 -34.50183 -32.62681 -31.31358 -30.03971 -27.52343 -26.65470 -24.02436 -23.05844 -21.43055 -19.47981 -18.99979 -18.23674 -17.65778 -17.22200 -16.66645 -16.51721 -16.21449 -15.47952 -14.87007 -14.75146 -14.24481 -13.90295 -13.77293 -13.52218 -13.12012 -12.98770 -12.74355 -12.70056 -12.14726 -11.87250 -11.75151 -11.45915 -11.16898 -11.00134 -10.92381 -10.88229 -9.43069 -9.14170 -8.48663 -7.31651 -5.99669 1.13791 1.40911 1.50351 1.53337 1.63476 1.71010 1.93714 2.27367 2.92850 3.12207 3.38318 3.47311 3.79339 3.97521 4.31715 4.45038 4.57821 4.64383 4.69142 4.86388 5.10427 5.24227 5.34495 5.44295 5.66318 5.88260 6.06786 6.16989 6.28397 6.56726 6.67940 6.91874 6.96891 7.06663 7.14367 7.18340 7.47725 7.69262 8.51368 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022391 B = 0.006665 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.204346 B = 4199.850206 C = 4973.512144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.222 4.222 3 C 0.264 3.736 4 H 0.107 0.893 5 C 0.071 3.929 6 O -0.583 6.583 7 N -0.746 5.746 8 C 0.175 3.825 9 C -0.258 4.258 10 C -0.155 4.155 11 C 0.070 3.930 12 N -0.879 5.879 13 C 0.060 3.940 14 C -0.491 4.491 15 H 0.075 0.925 16 C 0.031 3.969 17 N -0.834 5.834 18 Si 0.975 3.025 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.259 1.259 22 C -0.226 4.226 23 H 0.253 0.747 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.392 0.608 27 H 0.386 0.614 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.389 0.611 31 H 0.391 0.609 32 H 0.278 0.722 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 3.889 -8.796 9.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.223 4.223 3 C 0.159 3.841 4 H 0.125 0.875 5 C -0.008 4.008 6 O -0.390 6.390 7 N -0.378 5.378 8 C 0.076 3.924 9 C -0.281 4.281 10 C -0.179 4.179 11 C -0.032 4.032 12 N -0.423 5.423 13 C 0.055 3.945 14 C -0.522 4.522 15 H 0.093 0.907 16 C -0.181 4.181 17 N -0.462 5.462 18 Si 0.797 3.203 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.183 1.183 22 C -0.251 4.251 23 H 0.269 0.731 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.240 0.760 27 H 0.219 0.781 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.217 0.783 31 H 0.219 0.781 32 H 0.088 0.912 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.059 3.369 -8.531 9.669 hybrid contribution 0.306 0.406 0.965 1.091 sum -2.753 3.776 -7.566 8.893 Atomic orbital electron populations 1.25721 0.96620 1.00067 0.96939 1.23269 0.94786 1.01166 1.03095 1.17798 0.83749 0.97305 0.85254 0.87525 1.22672 0.97013 0.85810 0.95293 1.86492 1.72884 1.17312 1.62345 1.44334 1.16024 1.71764 1.05698 1.17608 0.85451 0.95979 0.93401 1.19955 0.96582 1.15334 0.96268 1.20066 0.97128 1.06887 0.93839 1.18044 0.89158 1.02648 0.93348 1.41684 1.16246 1.74423 1.09912 1.17353 0.92187 0.92470 0.92490 1.19380 0.94177 1.47369 0.91317 0.90654 1.26595 0.94555 0.92065 1.04929 1.69965 1.05145 1.36145 1.34940 0.85364 0.78593 0.79656 0.76666 1.19026 1.20138 1.18330 1.20481 0.99604 1.11488 0.93526 0.73071 0.92868 0.90764 0.75953 0.78139 0.86755 0.86671 0.78261 0.78123 0.91165 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.55 19.25 74.32 1.43 -3.12 16 2 C -0.22 -6.99 12.25 31.12 0.38 -6.61 16 3 C 0.26 8.73 2.51 43.19 0.11 8.84 16 4 H 0.11 3.38 6.47 -2.39 -0.02 3.37 16 5 C 0.07 1.98 6.76 71.98 0.49 2.47 16 6 O -0.58 -16.71 13.07 -148.98 -1.95 -18.66 16 7 N -0.75 -30.72 5.18 -327.62 -1.70 -32.42 16 8 C 0.18 8.31 6.63 38.13 0.25 8.56 16 9 C -0.26 -11.15 8.84 22.55 0.20 -10.95 16 10 C -0.15 -6.76 9.86 22.35 0.22 -6.54 16 11 C 0.07 3.37 6.79 38.97 0.26 3.63 16 12 N -0.88 -35.04 8.98 -50.31 -0.45 -35.49 16 13 C 0.06 3.29 5.58 -21.18 -0.12 3.17 16 14 C -0.49 -26.57 8.50 23.35 0.20 -26.37 16 15 H 0.08 3.83 6.68 -2.91 -0.02 3.81 16 16 C 0.03 1.62 5.18 85.23 0.44 2.06 16 17 N -0.83 -45.86 10.88 21.82 0.24 -45.62 16 18 Si 0.98 39.92 29.59 68.60 2.03 41.95 16 19 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 20 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 22 C -0.23 -12.35 8.51 22.81 0.19 -12.16 16 23 H 0.25 4.07 7.80 -4.42 -0.03 4.03 16 24 H 0.05 1.57 7.80 -2.39 -0.02 1.55 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.39 7.23 9.12 -74.06 -0.68 6.55 16 27 H 0.39 16.66 8.58 -92.70 -0.80 15.87 16 28 H 0.11 4.19 6.17 -2.91 -0.02 4.17 16 29 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.39 15.46 7.04 -92.71 -0.65 14.80 16 31 H 0.39 12.72 8.83 -92.71 -0.82 11.90 16 32 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 33 H 0.09 5.55 6.13 -2.91 -0.02 5.53 16 Total: -1.00 -66.63 288.80 0.47 -66.16 By element: Atomic # 1 Polarization: 62.85 SS G_CDS: -1.76 Total: 61.09 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 4.06 Total: -37.01 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -1.91 Total: -113.53 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -1.95 Total: -18.66 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -66.63 0.47 -66.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718174037.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.531 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds