Wall clock time and date at job start Mon Mar 30 2020 03:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38392 * 119.43450 * 2 1 4 4 C 1.38278 * 119.33361 * 179.67676 * 3 2 1 5 5 C 1.40267 * 118.26913 * 0.55714 * 4 3 2 6 6 C 1.47210 * 120.58659 * 179.73549 * 5 4 3 7 7 C 1.34798 * 120.00156 * 316.29552 * 6 5 4 8 8 C 1.46430 * 120.00264 * 349.08912 * 7 6 5 9 9 O 1.21700 * 119.99457 * 353.22458 * 8 7 6 10 10 N 1.34771 * 120.00485 * 172.94574 * 8 7 6 11 11 C 1.46491 * 120.00264 * 180.27343 * 10 8 7 12 12 C 1.50697 * 109.47480 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00074 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00570 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99945 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00276 * 180.02562 * 14 12 11 17 17 H 1.48509 * 109.47523 * 89.99846 * 16 14 12 18 18 H 1.48501 * 109.47179 * 209.99492 * 16 14 12 19 19 H 1.48496 * 109.47174 * 329.99750 * 16 14 12 20 20 C 1.39794 * 118.82681 * 359.46403 * 5 4 3 21 21 N 1.31661 * 120.52811 * 0.24908 * 20 5 4 22 22 H 1.09002 * 109.47537 * 270.02939 * 1 2 3 23 23 H 1.09001 * 109.47018 * 30.02513 * 1 2 3 24 24 H 1.09002 * 109.47351 * 150.02508 * 1 2 3 25 25 H 1.08010 * 120.32903 * 359.96868 * 3 2 1 26 26 H 1.08000 * 120.86615 * 180.31846 * 4 3 2 27 27 H 1.08003 * 119.99803 * 136.29076 * 6 5 4 28 28 H 1.08003 * 120.00282 * 169.08451 * 7 6 5 29 29 H 0.97004 * 119.99626 * 0.27914 * 10 8 7 30 30 H 1.09000 * 109.47463 * 300.00567 * 11 10 8 31 31 H 1.09003 * 109.47416 * 60.00409 * 11 10 8 32 32 H 0.96993 * 120.00365 * 180.02562 * 15 14 12 33 33 H 1.08004 * 119.73929 * 180.27674 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.2053 0.0000 4 6 3.5699 1.2029 0.0068 5 6 4.2321 -0.0337 0.0015 6 6 5.7029 -0.0957 0.0024 7 6 6.4126 0.7228 -0.7996 8 6 5.7332 1.4998 -1.8384 9 8 4.5507 1.3161 -2.0601 10 7 6.4159 2.4223 -2.5450 11 6 5.7348 3.2038 -3.5800 12 6 6.7139 4.1566 -4.2160 13 1 7.7408 4.1782 -3.8822 14 6 6.2986 5.0016 -5.2232 15 7 5.0479 4.9757 -5.6294 16 14 7.5124 6.1821 -6.0119 17 1 8.1623 5.5219 -7.1726 18 1 6.7933 7.3971 -6.4724 19 1 8.5467 6.5660 -5.0179 20 6 3.4706 -1.2060 0.0010 21 7 2.1553 -1.1492 0.0006 22 1 -0.3634 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5134 25 1 1.6432 2.1384 -0.0005 26 1 4.1256 2.1289 0.0121 27 1 6.2133 -0.7971 0.6459 28 1 7.4823 0.8057 -0.6761 29 1 7.3584 2.5686 -2.3682 30 1 5.3367 2.5314 -4.3400 31 1 4.9178 3.7682 -3.1305 32 1 4.7558 5.5698 -6.3382 33 1 3.9653 -2.1661 0.0015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787619456.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:18 Heat of formation + Delta-G solvation = -10.725654 kcal Electronic energy + Delta-G solvation = -16829.015255 eV Core-core repulsion = 14047.037193 eV Total energy + Delta-G solvation = -2781.978062 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.34630 -40.20634 -36.39791 -35.29562 -34.36651 -33.19406 -32.29666 -29.62190 -28.19524 -25.39639 -24.38029 -23.69584 -22.29367 -20.65326 -18.88082 -17.92928 -17.51898 -17.00424 -16.91656 -16.24459 -15.88003 -15.55387 -15.33400 -14.77855 -14.33289 -14.18993 -14.03234 -13.80788 -13.54150 -13.21032 -13.02844 -12.92133 -12.73495 -12.56789 -12.23542 -11.52157 -11.36383 -10.82321 -10.79758 -10.34721 -10.21466 -9.73064 -9.18987 -8.31386 -6.48250 -0.31111 0.42076 0.89689 1.41772 1.44031 1.55332 2.32323 2.43035 2.69555 2.91797 3.03863 3.46015 3.82454 3.86371 4.01378 4.06552 4.22860 4.44671 4.69685 4.73383 4.77986 4.81632 5.01946 5.10813 5.15111 5.21671 5.22956 5.30830 5.46724 5.55614 5.72828 5.83434 5.85848 6.63325 6.94389 7.07729 7.21821 7.51566 8.80819 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033055 B = 0.004819 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.862094 B = 5808.672383 C = 6468.706988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.116 3.884 3 C -0.200 4.200 4 C -0.006 4.006 5 C -0.137 4.137 6 C -0.015 4.015 7 C -0.205 4.205 8 C 0.511 3.489 9 O -0.589 6.589 10 N -0.702 5.702 11 C 0.269 3.731 12 C -0.557 4.557 13 H 0.084 0.916 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.985 3.015 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.254 1.254 20 C 0.107 3.893 21 N -0.517 5.517 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.138 0.862 26 H 0.110 0.890 27 H 0.189 0.811 28 H 0.174 0.826 29 H 0.408 0.592 30 H -0.017 1.017 31 H -0.013 1.013 32 H 0.269 0.731 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 -9.038 13.985 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.021 4.021 3 C -0.220 4.220 4 C -0.032 4.032 5 C -0.139 4.139 6 C -0.035 4.035 7 C -0.225 4.225 8 C 0.301 3.699 9 O -0.473 6.473 10 N -0.350 5.350 11 C 0.146 3.854 12 C -0.595 4.595 13 H 0.102 0.898 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.808 3.192 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.178 1.178 20 C -0.049 4.049 21 N -0.227 5.227 22 H 0.113 0.887 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.156 0.844 26 H 0.128 0.872 27 H 0.206 0.794 28 H 0.192 0.808 29 H 0.244 0.756 30 H 0.001 0.999 31 H 0.005 0.995 32 H 0.077 0.923 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.150 -9.817 13.674 16.834 hybrid contribution 1.016 1.775 -0.946 2.254 sum 0.866 -8.042 12.728 15.081 Atomic orbital electron populations 1.20757 0.87007 1.03779 1.04027 1.21754 0.98413 0.88086 0.93878 1.21970 0.95007 0.99867 1.05161 1.21580 0.94560 0.97417 0.89644 1.20169 0.95834 0.94101 1.03778 1.22639 0.90266 0.95073 0.95502 1.23226 1.02352 0.99999 0.96937 1.19457 0.86806 0.80230 0.83374 1.90813 1.17452 1.68877 1.70141 1.46217 1.14297 1.37411 1.37120 1.18477 0.92621 0.89203 0.85079 1.21637 0.97100 1.20656 1.20103 0.89819 1.26067 0.97367 0.99151 0.96961 1.70138 1.18041 1.39465 1.29403 0.85160 0.78140 0.77236 0.78713 1.19641 1.20951 1.17806 1.23279 0.89015 0.98303 0.94346 1.67436 1.10705 1.29390 1.15196 0.88675 0.89979 0.90625 0.84434 0.87169 0.79420 0.80842 0.75627 0.99899 0.99482 0.92268 0.80001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.21 10.16 71.24 0.72 -1.49 16 2 C 0.12 3.55 6.78 42.58 0.29 3.84 16 3 C -0.20 -6.50 9.72 22.32 0.22 -6.29 16 4 C -0.01 -0.21 6.72 22.77 0.15 -0.06 16 5 C -0.14 -4.04 4.55 -20.05 -0.09 -4.13 16 6 C -0.01 -0.33 9.84 23.84 0.23 -0.09 16 7 C -0.20 -5.20 9.94 23.61 0.23 -4.96 16 8 C 0.51 20.01 6.82 86.38 0.59 20.60 16 9 O -0.59 -28.08 12.13 -4.35 -0.05 -28.13 16 10 N -0.70 -29.42 5.54 -471.10 -2.61 -32.04 16 11 C 0.27 14.81 5.43 85.63 0.46 15.27 16 12 C -0.56 -30.33 9.28 25.60 0.24 -30.09 16 13 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 14 C 0.00 0.23 5.46 84.65 0.46 0.69 16 15 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 16 Si 0.98 42.24 29.54 68.60 2.03 44.27 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 20 C 0.11 3.03 10.96 85.10 0.93 3.96 16 21 N -0.52 -16.34 10.25 -182.58 -1.87 -18.21 16 22 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.08 1.67 8.07 -2.39 -0.02 1.65 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 26 H 0.11 3.95 7.10 -2.91 -0.02 3.93 16 27 H 0.19 2.14 8.06 -2.91 -0.02 2.11 16 28 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 29 H 0.41 14.02 8.30 -92.71 -0.77 13.25 16 30 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 31 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -75.51 291.91 2.57 -72.94 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.35 Total: 20.12 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 4.45 Total: -2.74 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -4.20 Total: -106.45 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.05 Total: -28.13 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -75.51 2.57 -72.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787619456.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.213 kcal (2) G-P(sol) polarization free energy of solvation -75.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds