Wall clock time and date at job start Mon Mar 30 2020 03:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38466 * 120.48237 * 2 1 4 4 C 1.38695 * 118.52821 * 179.97438 * 3 2 1 5 5 C 1.38542 * 119.40958 * 0.02562 * 4 3 2 6 6 N 1.31543 * 120.93420 * 359.71459 * 5 4 3 7 7 C 1.32965 * 121.59704 * 0.57416 * 6 5 4 8 8 C 1.47380 * 119.75255 * 179.70717 * 7 6 5 9 9 C 1.34652 * 120.00096 * 44.04433 * 8 7 6 10 10 C 1.46654 * 119.99982 * 7.36853 * 9 8 7 11 11 O 1.21669 * 120.00028 * 5.34218 * 10 9 8 12 12 N 1.34774 * 120.00105 * 185.06227 * 10 9 8 13 13 C 1.46503 * 120.00212 * 180.27675 * 12 10 9 14 14 C 1.50696 * 109.47063 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00416 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00135 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00196 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99612 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47080 * 90.00698 * 18 16 14 20 20 H 1.48507 * 109.47163 * 209.99961 * 18 16 14 21 21 H 1.48496 * 109.47531 * 330.00195 * 18 16 14 22 22 H 1.08998 * 109.47470 * 270.02670 * 1 2 3 23 23 H 1.09001 * 109.46918 * 30.02300 * 1 2 3 24 24 H 1.09005 * 109.47551 * 150.02085 * 1 2 3 25 25 H 1.08003 * 120.73816 * 359.97438 * 3 2 1 26 26 H 1.07992 * 120.29703 * 180.02562 * 4 3 2 27 27 H 1.08004 * 119.53568 * 179.97438 * 5 4 3 28 28 H 1.08005 * 119.99956 * 224.04194 * 8 7 6 29 29 H 1.07997 * 119.99754 * 187.36560 * 9 8 7 30 30 H 0.97001 * 120.00110 * 0.27827 * 12 10 9 31 31 H 1.08996 * 109.46726 * 300.00032 * 13 12 10 32 32 H 1.08994 * 109.46849 * 60.00223 * 13 12 10 33 33 H 0.97006 * 119.99846 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1933 0.0000 4 6 3.5955 1.1460 0.0005 5 6 4.2343 -0.0834 0.0005 6 7 3.5448 -1.2037 0.0056 7 6 2.2152 -1.2034 -0.0004 8 6 1.4836 -2.4828 -0.0008 9 6 1.8733 -3.4815 0.8138 10 6 2.9192 -3.2458 1.8145 11 8 3.3661 -2.1256 1.9751 12 7 3.3814 -4.2690 2.5601 13 6 4.4219 -4.0324 3.5639 14 6 4.7591 -5.3293 4.2531 15 1 4.2490 -6.2389 3.9720 16 6 5.7180 -5.3548 5.2435 17 7 6.0127 -6.4868 5.8447 18 14 6.5997 -3.7816 5.7303 19 1 5.8476 -3.1097 6.8205 20 1 7.9696 -4.1075 6.2021 21 1 6.6829 -2.8768 4.5557 22 1 -0.3634 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6894 2.1399 -0.0004 26 1 4.1718 2.0593 0.0010 27 1 5.3136 -0.1226 0.0005 28 1 0.6348 -2.6192 -0.6546 29 1 1.4156 -4.4561 0.7304 30 1 3.0251 -5.1620 2.4321 31 1 5.3135 -3.6377 3.0768 32 1 4.0608 -3.3131 4.2989 33 1 6.6876 -6.5046 6.5413 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787629793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:36 Heat of formation + Delta-G solvation = 28.687520 kcal Electronic energy + Delta-G solvation = -17048.761565 eV Core-core repulsion = 14268.492586 eV Total energy + Delta-G solvation = -2780.268979 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13555 -38.57035 -34.44897 -33.82950 -33.17752 -32.29465 -30.57683 -28.02847 -27.04839 -24.47814 -22.55252 -21.84464 -20.82656 -19.25248 -17.56087 -16.59267 -16.13097 -15.68908 -15.15010 -14.63037 -14.39904 -14.18286 -13.87138 -13.42159 -13.00664 -12.84614 -12.82992 -12.50823 -12.37927 -12.14083 -11.99575 -11.28204 -10.96029 -10.73957 -10.04899 -9.92015 -9.48000 -9.43716 -9.08228 -8.90431 -8.71592 -8.19446 -7.96431 -6.18037 -4.19436 0.87357 1.51214 1.99250 3.28812 3.35348 3.44879 3.99544 4.10783 4.18415 4.36930 4.47892 4.75626 4.89386 5.04451 5.13695 5.17644 5.36914 5.43510 5.51138 5.53073 5.67688 5.83471 5.99810 6.12456 6.26232 6.40226 6.47229 6.90044 6.94537 7.14870 7.34126 7.47336 8.21737 8.34036 8.61731 8.80850 9.09829 9.43225 10.94091 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032187 B = 0.005547 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.702271 B = 5046.492940 C = 5612.360125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.131 4.131 3 C -0.089 4.089 4 C -0.172 4.172 5 C 0.099 3.901 6 N -0.415 5.415 7 C 0.159 3.841 8 C -0.058 4.058 9 C -0.159 4.159 10 C 0.525 3.475 11 O -0.536 6.536 12 N -0.701 5.701 13 C 0.223 3.777 14 C -0.542 4.542 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.894 5.894 18 Si 0.877 3.123 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.261 1.261 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.149 0.851 28 H 0.140 0.860 29 H 0.132 0.868 30 H 0.395 0.605 31 H 0.025 0.975 32 H 0.018 0.982 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.506 12.332 -13.406 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.133 4.133 3 C -0.115 4.115 4 C -0.192 4.192 5 C -0.061 4.061 6 N -0.123 5.123 7 C 0.024 3.976 8 C -0.078 4.078 9 C -0.182 4.182 10 C 0.312 3.688 11 O -0.415 6.415 12 N -0.350 5.350 13 C 0.101 3.899 14 C -0.580 4.580 15 H 0.097 0.903 16 C -0.126 4.126 17 N -0.531 5.531 18 Si 0.703 3.297 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.185 1.185 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.145 0.855 26 H 0.145 0.855 27 H 0.166 0.834 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.228 0.772 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.585 12.221 -13.095 20.316 hybrid contribution 0.005 1.029 0.510 1.149 sum -9.580 13.251 -12.585 20.634 Atomic orbital electron populations 1.20717 0.90644 1.02590 1.02519 1.20829 0.96919 0.93462 1.02116 1.21234 0.94147 0.97526 0.98561 1.22135 0.95175 0.99434 1.02469 1.22604 1.00101 0.87533 0.95869 1.67840 1.06986 1.30653 1.06829 1.19684 0.89629 0.92112 0.96205 1.21987 0.97132 0.91018 0.97674 1.23282 0.98650 0.99071 0.97159 1.18375 0.82871 0.85427 0.82170 1.90772 1.59326 1.22935 1.68496 1.46110 1.40560 1.10352 1.37934 1.19427 0.86299 0.97527 0.86659 1.21124 1.22917 0.93919 1.19992 0.90276 1.24791 0.96082 0.96385 0.95362 1.69887 1.32519 1.25645 1.25092 0.86816 0.79247 0.83869 0.79750 1.19965 1.20922 1.18517 0.90999 0.91674 0.91255 0.85480 0.85453 0.83393 0.84290 0.84974 0.77171 0.95732 0.96444 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.64 36.01 0.35 -0.66 16 2 C -0.13 -1.73 5.94 -104.02 -0.62 -2.35 16 3 C -0.09 -1.09 9.85 -39.33 -0.39 -1.48 16 4 C -0.17 -2.23 10.11 -39.30 -0.40 -2.63 16 5 C 0.10 1.56 11.13 -17.56 -0.20 1.37 16 6 N -0.41 -7.57 7.12 -9.90 -0.07 -7.64 16 7 C 0.16 2.52 5.20 -83.14 -0.43 2.09 16 8 C -0.06 -0.78 8.91 -37.13 -0.33 -1.11 16 9 C -0.16 -2.37 10.04 -37.46 -0.38 -2.75 16 10 C 0.53 10.66 7.47 -12.87 -0.10 10.56 16 11 O -0.54 -12.58 12.35 5.22 0.06 -12.52 16 12 N -0.70 -14.99 5.54 -62.82 -0.35 -15.34 16 13 C 0.22 5.72 4.50 -5.19 -0.02 5.69 16 14 C -0.54 -15.27 9.83 -34.44 -0.34 -15.61 16 15 H 0.08 2.31 7.84 -52.48 -0.41 1.90 16 16 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 17 N -0.89 -27.02 13.96 55.43 0.77 -26.24 16 18 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 19 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.49 8.10 -51.93 -0.42 0.06 16 24 H 0.07 0.55 6.55 -51.93 -0.34 0.21 16 25 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 26 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.15 2.07 8.06 -52.48 -0.42 1.65 16 28 H 0.14 1.26 7.11 -52.48 -0.37 0.89 16 29 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.39 7.41 8.30 -40.82 -0.34 7.07 16 31 H 0.02 0.67 7.20 -51.93 -0.37 0.30 16 32 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 286.62 15.07 4.32 4.32 Total: -1.00 -34.87 286.62 -6.81 -41.67 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.93 Total: 3.13 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.95 Total: -4.74 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.35 Total: -49.22 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.06 Total: -12.52 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.87 -6.81 -41.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787629793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.361 kcal (2) G-P(sol) polarization free energy of solvation -34.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds