Wall clock time and date at job start Mon Mar 30 2020 03:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38466 * 120.48237 * 2 1 4 4 C 1.38695 * 118.52821 * 179.97438 * 3 2 1 5 5 C 1.38542 * 119.40958 * 0.02562 * 4 3 2 6 6 N 1.31543 * 120.93420 * 359.71459 * 5 4 3 7 7 C 1.32965 * 121.59704 * 0.57416 * 6 5 4 8 8 C 1.47380 * 119.75255 * 179.70717 * 7 6 5 9 9 C 1.34652 * 120.00096 * 44.04433 * 8 7 6 10 10 C 1.46654 * 119.99982 * 7.36853 * 9 8 7 11 11 O 1.21669 * 120.00028 * 5.34218 * 10 9 8 12 12 N 1.34774 * 120.00105 * 185.06227 * 10 9 8 13 13 C 1.46503 * 120.00212 * 180.27675 * 12 10 9 14 14 C 1.50696 * 109.47063 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00416 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00135 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00196 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99612 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47080 * 90.00698 * 18 16 14 20 20 H 1.48507 * 109.47163 * 209.99961 * 18 16 14 21 21 H 1.48496 * 109.47531 * 330.00195 * 18 16 14 22 22 H 1.08998 * 109.47470 * 270.02670 * 1 2 3 23 23 H 1.09001 * 109.46918 * 30.02300 * 1 2 3 24 24 H 1.09005 * 109.47551 * 150.02085 * 1 2 3 25 25 H 1.08003 * 120.73816 * 359.97438 * 3 2 1 26 26 H 1.07992 * 120.29703 * 180.02562 * 4 3 2 27 27 H 1.08004 * 119.53568 * 179.97438 * 5 4 3 28 28 H 1.08005 * 119.99956 * 224.04194 * 8 7 6 29 29 H 1.07997 * 119.99754 * 187.36560 * 9 8 7 30 30 H 0.97001 * 120.00110 * 0.27827 * 12 10 9 31 31 H 1.08996 * 109.46726 * 300.00032 * 13 12 10 32 32 H 1.08994 * 109.46849 * 60.00223 * 13 12 10 33 33 H 0.97006 * 119.99846 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1933 0.0000 4 6 3.5955 1.1460 0.0005 5 6 4.2343 -0.0834 0.0005 6 7 3.5448 -1.2037 0.0056 7 6 2.2152 -1.2034 -0.0004 8 6 1.4836 -2.4828 -0.0008 9 6 1.8733 -3.4815 0.8138 10 6 2.9192 -3.2458 1.8145 11 8 3.3661 -2.1256 1.9751 12 7 3.3814 -4.2690 2.5601 13 6 4.4219 -4.0324 3.5639 14 6 4.7591 -5.3293 4.2531 15 1 4.2490 -6.2389 3.9720 16 6 5.7180 -5.3548 5.2435 17 7 6.0127 -6.4868 5.8447 18 14 6.5997 -3.7816 5.7303 19 1 5.8476 -3.1097 6.8205 20 1 7.9696 -4.1075 6.2021 21 1 6.6829 -2.8768 4.5557 22 1 -0.3634 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6894 2.1399 -0.0004 26 1 4.1718 2.0593 0.0010 27 1 5.3136 -0.1226 0.0005 28 1 0.6348 -2.6192 -0.6546 29 1 1.4156 -4.4561 0.7304 30 1 3.0251 -5.1620 2.4321 31 1 5.3135 -3.6377 3.0768 32 1 4.0608 -3.3131 4.2989 33 1 6.6876 -6.5046 6.5413 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787629793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:35 Heat of formation + Delta-G solvation = 3.918479 kcal Electronic energy + Delta-G solvation = -17049.835631 eV Core-core repulsion = 14268.492586 eV Total energy + Delta-G solvation = -2781.343045 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.26484 -40.07323 -36.20972 -34.99898 -34.41608 -34.21704 -31.72367 -29.92992 -27.97907 -25.81287 -24.18358 -22.90405 -22.39200 -20.74743 -19.11614 -18.21768 -17.43476 -17.04791 -16.66320 -16.04214 -15.98023 -15.49579 -15.37508 -14.72697 -14.46232 -14.17013 -14.09710 -13.84512 -13.70616 -13.23306 -13.19479 -12.99631 -12.72592 -12.21162 -11.96978 -11.67713 -11.15284 -10.94302 -10.74633 -10.31620 -10.07259 -9.75766 -9.28688 -8.42719 -6.49133 -0.21323 0.47253 0.90838 1.28247 1.30175 1.43912 2.25130 2.51633 2.63231 2.92768 3.04629 3.49568 3.83572 3.99917 4.06292 4.18536 4.23574 4.48971 4.66553 4.71484 4.79390 4.84399 4.90754 5.01317 5.10431 5.21649 5.24154 5.29993 5.42063 5.47865 5.59030 5.94387 6.10305 6.51845 6.94336 7.14942 7.25948 7.54465 8.72254 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032187 B = 0.005547 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.702271 B = 5046.492940 C = 5612.360125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.130 4.130 3 C -0.095 4.095 4 C -0.168 4.168 5 C 0.063 3.937 6 N -0.460 5.460 7 C 0.117 3.883 8 C -0.031 4.031 9 C -0.182 4.182 10 C 0.518 3.482 11 O -0.572 6.572 12 N -0.706 5.706 13 C 0.239 3.761 14 C -0.546 4.546 15 H 0.060 0.940 16 C 0.028 3.972 17 N -0.930 5.930 18 Si 0.938 3.062 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.267 1.267 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.163 0.837 26 H 0.156 0.844 27 H 0.147 0.853 28 H 0.191 0.809 29 H 0.172 0.828 30 H 0.406 0.594 31 H 0.004 0.996 32 H 0.005 0.995 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.431 14.111 -14.503 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.132 4.132 3 C -0.121 4.121 4 C -0.187 4.187 5 C -0.096 4.096 6 N -0.169 5.169 7 C -0.018 4.018 8 C -0.051 4.051 9 C -0.204 4.204 10 C 0.308 3.692 11 O -0.453 6.453 12 N -0.356 5.356 13 C 0.115 3.885 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.172 4.172 17 N -0.569 5.569 18 Si 0.762 3.238 19 H -0.190 1.190 20 H -0.194 1.194 21 H -0.191 1.191 22 H 0.090 0.910 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.181 0.819 26 H 0.174 0.826 27 H 0.164 0.836 28 H 0.207 0.793 29 H 0.189 0.811 30 H 0.242 0.758 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.533 13.987 -14.211 23.035 hybrid contribution 0.562 0.558 0.768 1.103 sum -10.971 14.545 -13.443 22.642 Atomic orbital electron populations 1.20826 0.87683 1.04787 1.03065 1.21319 0.99061 0.92810 0.99983 1.21749 0.93990 0.98919 0.97424 1.22453 0.96113 0.99356 1.00790 1.22825 1.00493 0.88570 0.97701 1.67723 1.08709 1.32174 1.08250 1.20248 0.89424 0.94265 0.97852 1.22607 0.96905 0.89194 0.96353 1.23241 0.98320 1.01705 0.97156 1.19296 0.83221 0.84350 0.82345 1.90755 1.60710 1.24265 1.69559 1.45981 1.40192 1.11640 1.37776 1.18948 0.86853 0.95613 0.87050 1.21312 1.22702 0.94261 1.20160 0.92221 1.25575 0.96879 0.99366 0.95415 1.69980 1.33453 1.27561 1.25899 0.85858 0.78763 0.79959 0.79268 1.18965 1.19438 1.19127 0.91006 0.89269 0.89437 0.81916 0.82590 0.83563 0.79256 0.81107 0.75827 0.97766 0.97714 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.64 71.24 0.69 -0.88 16 2 C -0.13 -3.09 5.94 -19.47 -0.12 -3.21 16 3 C -0.10 -2.09 9.85 22.43 0.22 -1.87 16 4 C -0.17 -4.12 10.11 22.45 0.23 -3.89 16 5 C 0.06 2.04 11.13 84.81 0.94 2.99 16 6 N -0.46 -16.96 7.12 -185.23 -1.32 -18.28 16 7 C 0.12 3.56 5.20 41.72 0.22 3.78 16 8 C -0.03 -0.74 8.91 23.86 0.21 -0.53 16 9 C -0.18 -5.10 10.04 23.65 0.24 -4.86 16 10 C 0.52 21.12 7.47 86.44 0.65 21.76 16 11 O -0.57 -27.37 12.35 -4.25 -0.05 -27.42 16 12 N -0.71 -30.65 5.54 -470.88 -2.61 -33.26 16 13 C 0.24 12.56 4.50 85.63 0.38 12.95 16 14 C -0.55 -31.54 9.83 25.60 0.25 -31.29 16 15 H 0.06 3.59 7.84 -2.91 -0.02 3.57 16 16 C 0.03 1.64 5.47 84.65 0.46 2.10 16 17 N -0.93 -56.88 13.96 21.45 0.30 -56.58 16 18 Si 0.94 45.98 27.47 68.60 1.88 47.86 16 19 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.27 -13.24 6.54 99.48 0.65 -12.58 16 22 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.09 0.90 8.10 -2.39 -0.02 0.88 16 24 H 0.09 0.96 6.55 -2.38 -0.02 0.94 16 25 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 26 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 27 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 28 H 0.19 2.47 7.11 -2.91 -0.02 2.45 16 29 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.41 15.40 8.30 -92.71 -0.77 14.63 16 31 H 0.00 0.25 7.20 -2.39 -0.02 0.23 16 32 H 0.00 0.27 7.57 -2.39 -0.02 0.25 16 33 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -78.31 286.62 2.87 -75.44 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.30 Total: 15.20 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 4.37 Total: -2.95 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -3.63 Total: -108.13 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.05 Total: -27.42 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Total: -78.31 2.87 -75.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787629793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.358 kcal (2) G-P(sol) polarization free energy of solvation -78.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds