Wall clock time and date at job start Mon Mar 30 2020 03:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46855 * 117.27471 * 3 2 1 5 5 C 1.36978 * 120.00427 * 261.68922 * 4 3 2 6 6 H 1.07996 * 120.00377 * 191.06900 * 5 4 3 7 7 C 1.38974 * 119.99128 * 11.07159 * 5 4 3 8 8 N 1.31416 * 120.00559 * 32.57285 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 212.56991 * 7 5 4 10 10 H 1.48505 * 109.47044 * 60.00411 * 9 7 5 11 11 H 1.48500 * 109.47230 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47619 * 300.00571 * 9 7 5 13 13 C 1.34779 * 120.00347 * 81.69663 * 4 3 2 14 14 O 1.21656 * 120.00457 * 183.71306 * 13 4 3 15 15 C 1.47190 * 119.99916 * 3.70362 * 13 4 3 16 16 C 1.46715 * 127.01710 * 349.36703 * 15 13 4 17 17 C 1.34446 * 106.39149 * 179.97438 * 16 15 13 18 18 C 1.50695 * 125.45835 * 179.97438 * 17 16 15 19 19 N 1.36422 * 109.08326 * 359.75409 * 17 16 15 20 20 H 0.97001 * 124.81841 * 180.28287 * 19 17 16 21 21 C 1.34708 * 110.36448 * 0.41224 * 19 17 16 22 22 C 1.50696 * 125.90058 * 179.85426 * 21 19 17 23 23 H 4.40636 * 5.51480 * 180.02562 * 4 1 2 24 24 H 1.08997 * 109.47286 * 357.27637 * 3 2 1 25 25 H 1.08998 * 109.46827 * 237.27167 * 3 2 1 26 26 H 0.97000 * 120.00376 * 179.97438 * 8 7 5 27 27 H 1.08009 * 126.80486 * 0.02819 * 16 15 13 28 28 H 1.09001 * 109.47374 * 89.99699 * 18 17 16 29 29 H 1.08998 * 109.47171 * 209.99458 * 18 17 16 30 30 H 1.08995 * 109.47184 * 329.99682 * 18 17 16 31 31 H 1.08996 * 109.47568 * 269.69277 * 22 21 19 32 32 H 1.09000 * 109.46943 * 149.68826 * 22 21 19 33 33 H 1.08997 * 109.47115 * 29.69925 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6338 -1.2276 5 6 3.5243 -0.1395 -2.2887 6 1 4.0477 0.3089 -3.1202 7 6 3.2466 -1.5012 -2.2953 8 7 2.1541 -1.9519 -1.7205 9 14 4.4263 -2.6910 -3.1212 10 1 5.7580 -2.5995 -2.4703 11 1 3.9058 -4.0755 -2.9898 12 1 4.5535 -2.3438 -4.5594 13 6 3.1991 1.9773 -1.3131 14 8 3.5399 2.5048 -2.3550 15 6 2.8576 2.8064 -0.1458 16 6 2.2281 2.3590 1.1016 17 6 2.1084 3.4497 1.8786 18 6 1.5133 3.4759 3.2628 19 7 2.6166 4.5279 1.2151 20 1 2.6488 5.4308 1.5683 21 6 3.0647 4.1614 -0.0012 22 6 3.6901 5.0739 -1.0244 23 1 -1.0501 0.0001 0.0002 24 1 3.0098 -1.0256 0.0488 25 1 3.0090 0.5564 0.8645 26 1 1.9601 -2.9023 -1.7254 27 1 1.9223 1.3527 1.3474 28 1 2.2971 3.2973 3.9989 29 1 1.0592 4.4500 3.4447 30 1 0.7530 2.6993 3.3462 31 1 2.9135 5.4786 -1.6734 32 1 4.4071 4.5117 -1.6227 33 1 4.2023 5.8915 -0.5173 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798801828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:28 Heat of formation + Delta-G solvation = 92.332103 kcal Electronic energy + Delta-G solvation = -17802.113300 eV Core-core repulsion = 15024.604158 eV Total energy + Delta-G solvation = -2777.509143 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73981 -38.01848 -35.10199 -32.47909 -32.08715 -31.10878 -30.23241 -28.79498 -26.40120 -25.27539 -23.65644 -21.33553 -20.05296 -18.05974 -17.63015 -16.60317 -16.26765 -15.18769 -14.62220 -14.35241 -14.10980 -13.79976 -13.54355 -12.98356 -12.93840 -12.66975 -12.20911 -12.13815 -11.86272 -11.74732 -11.58186 -11.16888 -10.92331 -10.65006 -10.40338 -10.17968 -9.32942 -9.16543 -8.82441 -8.29726 -8.07278 -7.77916 -7.40191 -6.33309 -3.64105 2.48078 2.94319 3.28207 3.31424 3.36341 3.58131 3.83632 4.08233 4.26954 4.55309 5.09569 5.15199 5.28440 5.35393 5.43412 5.60236 5.63523 5.65484 5.92829 6.02890 6.09525 6.20644 6.39581 6.45945 6.51052 6.80331 6.85052 7.07687 7.40200 7.50691 7.65041 7.94527 8.23183 8.57699 8.84025 9.27701 9.52020 10.15090 10.70380 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.008041 C = 0.006647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.259887 B = 3481.506748 C = 4211.725616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.115 4.115 3 C 0.209 3.791 4 N -0.429 5.429 5 C -0.319 4.319 6 H 0.107 0.893 7 C 0.035 3.965 8 N -0.846 5.846 9 Si 0.909 3.091 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.516 3.484 14 O -0.594 6.594 15 C -0.190 4.190 16 C -0.181 4.181 17 C -0.010 4.010 18 C -0.078 4.078 19 N -0.554 5.554 20 H 0.405 0.595 21 C 0.067 3.933 22 C -0.079 4.079 23 H 0.199 0.801 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.268 0.732 27 H 0.163 0.837 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.636 8.014 10.317 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.117 4.117 3 C 0.086 3.914 4 N -0.146 5.146 5 C -0.446 4.446 6 H 0.125 0.875 7 C -0.170 4.170 8 N -0.483 5.483 9 Si 0.735 3.265 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.307 3.693 14 O -0.480 6.480 15 C -0.200 4.200 16 C -0.205 4.205 17 C -0.119 4.119 18 C -0.136 4.136 19 N -0.151 5.151 20 H 0.240 0.760 21 C -0.049 4.049 22 C -0.137 4.137 23 H 0.217 0.783 24 H 0.122 0.878 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.180 0.820 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.545 8.143 9.874 12.810 hybrid contribution -0.004 -0.444 -0.232 0.501 sum -0.549 7.699 9.642 12.351 Atomic orbital electron populations 1.24298 0.95392 1.05029 1.02867 1.23203 0.94442 0.96366 0.97661 1.18954 0.83996 1.00514 0.87946 1.43500 1.54698 1.03818 1.12566 1.19608 1.34613 0.89113 1.01293 0.87507 1.25181 0.95673 0.98113 0.98068 1.70273 1.19441 1.15227 1.43326 0.86279 0.81385 0.78907 0.79958 1.19921 1.21176 1.19827 1.17048 0.83886 0.81701 0.86648 1.90555 1.54339 1.72200 1.30930 1.20769 1.10059 0.92625 0.96545 1.22837 1.05461 0.98493 0.93714 1.20149 1.07665 0.87370 0.96741 1.20239 1.00202 1.02417 0.90707 1.41366 1.50115 1.09807 1.13814 0.76008 1.20430 1.02879 0.94594 0.86973 1.20361 1.00798 0.96777 0.95754 0.78343 0.87782 0.89572 0.92181 0.82029 0.91585 0.92420 0.90327 0.91232 0.88417 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.49 19.25 29.55 0.57 -4.92 16 2 C -0.12 -2.67 9.43 -37.12 -0.35 -3.02 16 3 C 0.21 4.90 4.69 -6.83 -0.03 4.87 16 4 N -0.43 -11.54 2.61 -119.24 -0.31 -11.85 16 5 C -0.32 -9.13 9.31 -14.98 -0.14 -9.27 16 6 H 0.11 3.21 7.41 -52.49 -0.39 2.82 16 7 C 0.04 0.94 4.62 -17.46 -0.08 0.86 16 8 N -0.85 -22.80 10.19 55.50 0.57 -22.23 16 9 Si 0.91 20.66 29.66 -169.99 -5.04 15.62 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.52 13.68 7.50 -12.62 -0.09 13.58 16 14 O -0.59 -17.12 14.68 5.23 0.08 -17.05 16 15 C -0.19 -4.18 6.10 -102.99 -0.63 -4.81 16 16 C -0.18 -3.43 8.11 -37.50 -0.30 -3.73 16 17 C -0.01 -0.16 7.11 -81.89 -0.58 -0.74 16 18 C -0.08 -0.84 10.41 36.00 0.37 -0.47 16 19 N -0.55 -8.05 5.90 -5.19 -0.03 -8.08 16 20 H 0.40 4.24 8.96 -40.82 -0.37 3.88 16 21 C 0.07 1.23 7.22 -81.48 -0.59 0.64 16 22 C -0.08 -1.27 9.81 36.00 0.35 -0.92 16 23 H 0.20 3.45 7.80 -54.08 -0.42 3.03 16 24 H 0.10 2.53 6.15 -51.93 -0.32 2.21 16 25 H 0.09 1.78 4.67 -51.93 -0.24 1.54 16 26 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.16 3.06 3.72 -52.48 -0.20 2.87 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.10 1.83 6.78 -51.93 -0.35 1.47 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 282.45 15.07 4.26 4.26 Total: -1.00 -33.44 282.45 -5.52 -38.97 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -3.53 Total: 8.30 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.50 Total: -7.93 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.22 Total: -42.16 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.08 Total: -17.05 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.04 Total: 15.62 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.44 -5.52 -38.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798801828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.298 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds