Wall clock time and date at job start Mon Mar 30 2020 03:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46855 * 117.27471 * 3 2 1 5 5 C 1.36978 * 120.00427 * 261.68922 * 4 3 2 6 6 H 1.07996 * 120.00377 * 191.06900 * 5 4 3 7 7 C 1.38974 * 119.99128 * 11.07159 * 5 4 3 8 8 N 1.31416 * 120.00559 * 32.57285 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 212.56991 * 7 5 4 10 10 H 1.48505 * 109.47044 * 60.00411 * 9 7 5 11 11 H 1.48500 * 109.47230 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47619 * 300.00571 * 9 7 5 13 13 C 1.34779 * 120.00347 * 81.69663 * 4 3 2 14 14 O 1.21656 * 120.00457 * 183.71306 * 13 4 3 15 15 C 1.47190 * 119.99916 * 3.70362 * 13 4 3 16 16 C 1.46715 * 127.01710 * 349.36703 * 15 13 4 17 17 C 1.34446 * 106.39149 * 179.97438 * 16 15 13 18 18 C 1.50695 * 125.45835 * 179.97438 * 17 16 15 19 19 N 1.36422 * 109.08326 * 359.75409 * 17 16 15 20 20 H 0.97001 * 124.81841 * 180.28287 * 19 17 16 21 21 C 1.34708 * 110.36448 * 0.41224 * 19 17 16 22 22 C 1.50696 * 125.90058 * 179.85426 * 21 19 17 23 23 H 4.40636 * 5.51480 * 180.02562 * 4 1 2 24 24 H 1.08997 * 109.47286 * 357.27637 * 3 2 1 25 25 H 1.08998 * 109.46827 * 237.27167 * 3 2 1 26 26 H 0.97000 * 120.00376 * 179.97438 * 8 7 5 27 27 H 1.08009 * 126.80486 * 0.02819 * 16 15 13 28 28 H 1.09001 * 109.47374 * 89.99699 * 18 17 16 29 29 H 1.08998 * 109.47171 * 209.99458 * 18 17 16 30 30 H 1.08995 * 109.47184 * 329.99682 * 18 17 16 31 31 H 1.08996 * 109.47568 * 269.69277 * 22 21 19 32 32 H 1.09000 * 109.46943 * 149.68826 * 22 21 19 33 33 H 1.08997 * 109.47115 * 29.69925 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6338 -1.2276 5 6 3.5243 -0.1395 -2.2887 6 1 4.0477 0.3089 -3.1202 7 6 3.2466 -1.5012 -2.2953 8 7 2.1541 -1.9519 -1.7205 9 14 4.4263 -2.6910 -3.1212 10 1 5.7580 -2.5995 -2.4703 11 1 3.9058 -4.0755 -2.9898 12 1 4.5535 -2.3438 -4.5594 13 6 3.1991 1.9773 -1.3131 14 8 3.5399 2.5048 -2.3550 15 6 2.8576 2.8064 -0.1458 16 6 2.2281 2.3590 1.1016 17 6 2.1084 3.4497 1.8786 18 6 1.5133 3.4759 3.2628 19 7 2.6166 4.5279 1.2151 20 1 2.6488 5.4308 1.5683 21 6 3.0647 4.1614 -0.0012 22 6 3.6901 5.0739 -1.0244 23 1 -1.0501 0.0001 0.0002 24 1 3.0098 -1.0256 0.0488 25 1 3.0090 0.5564 0.8645 26 1 1.9601 -2.9023 -1.7254 27 1 1.9223 1.3527 1.3474 28 1 2.2971 3.2973 3.9989 29 1 1.0592 4.4500 3.4447 30 1 0.7530 2.6993 3.3462 31 1 2.9135 5.4786 -1.6734 32 1 4.4071 4.5117 -1.6227 33 1 4.2023 5.8915 -0.5173 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798801828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:27 Heat of formation + Delta-G solvation = 70.168433 kcal Electronic energy + Delta-G solvation = -17803.074389 eV Core-core repulsion = 15024.604158 eV Total energy + Delta-G solvation = -2778.470231 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.14025 -39.91039 -37.07517 -34.36557 -33.34554 -33.01347 -31.74933 -29.91549 -28.25938 -27.11185 -25.13261 -23.01843 -21.42141 -19.80943 -19.49471 -18.33004 -17.83382 -16.91441 -16.21042 -16.07619 -15.95446 -15.39475 -15.16583 -14.47217 -14.25181 -13.97075 -13.78411 -13.66569 -13.54552 -13.09656 -12.92106 -12.82787 -12.47992 -12.32137 -12.11307 -12.09416 -11.14240 -11.05709 -10.70309 -10.26457 -9.82196 -9.55413 -8.78851 -8.38405 -5.78507 0.93738 1.40678 1.44144 1.53879 1.59747 2.05704 2.28559 2.38398 2.39756 2.62167 3.16953 3.42025 3.90393 4.02590 4.13272 4.36345 4.43852 4.57748 4.62547 4.76311 4.86520 4.89573 4.94547 5.06751 5.14437 5.21052 5.39608 5.43668 5.51142 5.93972 6.05544 6.21383 6.53599 6.82448 7.10898 7.21162 7.51053 8.14730 8.64086 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.008041 C = 0.006647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.259887 B = 3481.506748 C = 4211.725616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.155 4.155 3 C 0.216 3.784 4 N -0.444 5.444 5 C -0.365 4.365 6 H 0.075 0.925 7 C 0.008 3.992 8 N -0.859 5.859 9 Si 0.977 3.023 10 H -0.268 1.268 11 H -0.270 1.270 12 H -0.277 1.277 13 C 0.502 3.498 14 O -0.637 6.637 15 C -0.244 4.244 16 C -0.211 4.211 17 C 0.018 3.982 18 C -0.076 4.076 19 N -0.530 5.530 20 H 0.430 0.570 21 C 0.076 3.924 22 C -0.077 4.077 23 H 0.236 0.764 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.274 0.726 27 H 0.157 0.843 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 8.933 12.700 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.156 4.156 3 C 0.094 3.906 4 N -0.160 5.160 5 C -0.492 4.492 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.495 5.495 9 Si 0.801 3.199 10 H -0.193 1.193 11 H -0.195 1.195 12 H -0.203 1.203 13 C 0.295 3.705 14 O -0.527 6.527 15 C -0.253 4.253 16 C -0.234 4.234 17 C -0.092 4.092 18 C -0.134 4.134 19 N -0.129 5.129 20 H 0.270 0.730 21 C -0.043 4.043 22 C -0.134 4.134 23 H 0.253 0.747 24 H 0.105 0.895 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.174 0.826 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.423 9.071 12.310 15.357 hybrid contribution 0.188 -0.641 -0.918 1.135 sum -1.235 8.430 11.392 14.226 Atomic orbital electron populations 1.25185 0.96336 1.03255 1.01032 1.23349 0.94905 0.98010 0.99351 1.18947 0.84710 0.99471 0.87463 1.43683 1.55063 1.04188 1.13083 1.19508 1.36954 0.90583 1.02178 0.90683 1.25920 0.96557 0.98606 0.98574 1.70322 1.19928 1.15781 1.43458 0.85265 0.79200 0.76980 0.78496 1.19295 1.19452 1.20269 1.17867 0.82872 0.82047 0.87738 1.90487 1.56244 1.73022 1.32990 1.20616 1.13901 0.94118 0.96698 1.22739 1.07442 0.99707 0.93517 1.20734 1.04699 0.86059 0.97743 1.20415 1.00872 1.04386 0.87707 1.41304 1.48264 1.11058 1.12239 0.73009 1.20592 1.01694 0.93636 0.88333 1.20344 1.00373 0.97239 0.95443 0.74716 0.89548 0.87357 0.91594 0.82625 0.89513 0.89504 0.89846 0.90877 0.91847 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -10.01 19.25 74.32 1.43 -8.58 16 2 C -0.15 -7.26 9.43 31.12 0.29 -6.97 16 3 C 0.22 10.53 4.69 84.57 0.40 10.93 16 4 N -0.44 -25.22 2.61 -649.39 -1.70 -26.91 16 5 C -0.37 -22.15 9.31 84.07 0.78 -21.36 16 6 H 0.08 4.89 7.41 -2.91 -0.02 4.86 16 7 C 0.01 0.46 4.62 84.93 0.39 0.86 16 8 N -0.86 -47.03 10.19 21.67 0.22 -46.81 16 9 Si 0.98 43.42 29.66 68.60 2.03 45.46 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.50 28.17 7.50 86.59 0.65 28.82 16 14 O -0.64 -39.44 14.68 -4.21 -0.06 -39.51 16 15 C -0.24 -10.93 6.10 -18.81 -0.11 -11.04 16 16 C -0.21 -7.84 8.11 23.62 0.19 -7.65 16 17 C 0.02 0.49 7.11 40.98 0.29 0.79 16 18 C -0.08 -1.29 10.41 71.23 0.74 -0.55 16 19 N -0.53 -13.64 5.90 -170.33 -1.00 -14.64 16 20 H 0.43 6.93 8.96 -92.71 -0.83 6.10 16 21 C 0.08 2.69 7.22 42.02 0.30 3.00 16 22 C -0.08 -2.40 9.81 71.23 0.70 -1.70 16 23 H 0.24 7.56 7.80 -4.41 -0.03 7.52 16 24 H 0.09 4.39 6.15 -2.39 -0.01 4.38 16 25 H 0.11 4.66 4.67 -2.39 -0.01 4.65 16 26 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 27 H 0.16 5.89 3.72 -2.91 -0.01 5.88 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 2.46 6.78 -2.39 -0.02 2.45 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -77.95 282.45 5.86 -72.09 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.31 Total: 23.79 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 6.06 Total: -13.46 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.48 Total: -88.37 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.06 Total: -39.51 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.46 kcal Total: -77.95 5.86 -72.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798801828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.256 kcal (2) G-P(sol) polarization free energy of solvation -77.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds