Wall clock time and date at job start Mon Mar 30 2020 03:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34845 * 119.99823 * 2 1 4 4 C 1.47283 * 120.00608 * 2.07750 * 3 2 1 5 5 C 1.39731 * 119.76586 * 174.93167 * 4 3 2 6 6 C 1.38396 * 119.03907 * 179.97438 * 5 4 3 7 7 C 1.38768 * 118.52620 * 0.02562 * 6 5 4 8 8 C 1.38490 * 119.42692 * 0.27227 * 7 6 5 9 9 N 1.31577 * 120.93829 * 359.45122 * 8 7 6 10 10 C 1.46427 * 119.99586 * 179.97438 * 2 1 3 11 11 O 1.21739 * 119.99709 * 77.12815 * 10 2 1 12 12 N 1.34770 * 119.99823 * 257.12008 * 10 2 1 13 13 C 1.46495 * 120.00436 * 4.44942 * 12 10 2 14 14 C 1.36635 * 119.99791 * 184.44390 * 12 10 2 15 15 H 1.08002 * 119.99773 * 2.19981 * 14 12 10 16 16 C 1.39191 * 120.00065 * 182.19784 * 14 12 10 17 17 N 1.31279 * 119.99954 * 6.78265 * 16 14 12 18 18 Si 1.86795 * 119.99964 * 186.77661 * 16 14 12 19 19 H 1.48506 * 109.47311 * 60.00323 * 18 16 14 20 20 H 1.48504 * 109.47272 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47198 * 300.00214 * 18 16 14 22 22 H 1.09007 * 109.47011 * 60.27941 * 1 2 3 23 23 H 1.08998 * 109.47000 * 180.27914 * 1 2 3 24 24 H 1.09001 * 109.47358 * 300.28414 * 1 2 3 25 25 H 1.08006 * 119.99483 * 182.07818 * 3 2 1 26 26 H 1.08001 * 120.47873 * 0.02787 * 5 4 3 27 27 H 1.08003 * 120.73987 * 180.02562 * 6 5 4 28 28 H 1.08003 * 120.29035 * 179.97438 * 7 6 5 29 29 H 1.08001 * 119.52872 * 179.69545 * 8 7 6 30 30 H 1.09006 * 109.47162 * 356.05823 * 13 12 10 31 31 H 1.09001 * 109.47829 * 116.05853 * 13 12 10 32 32 H 1.09002 * 109.47054 * 236.06342 * 13 12 10 33 33 H 0.96991 * 120.00301 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1812 1.1678 0.0000 4 6 1.4456 2.4430 0.0462 5 6 2.1486 3.6458 0.1532 6 6 1.4423 4.8353 0.1949 7 6 0.0570 4.7860 0.1290 8 6 -0.5763 3.5584 0.0300 9 7 0.1172 2.4410 -0.0132 10 6 2.2391 -1.2681 0.0006 11 8 2.3400 -1.9131 -1.0270 12 7 2.8013 -1.7211 1.1386 13 6 2.5982 -0.9959 2.3951 14 6 3.5606 -2.8569 1.1204 15 1 3.7396 -3.3719 0.1880 16 6 4.1034 -3.3503 2.3033 17 7 3.7788 -2.8043 3.4522 18 14 5.2935 -4.7892 2.2561 19 1 6.4804 -4.4235 1.4419 20 1 5.7239 -5.1213 3.6381 21 1 4.6220 -5.9673 1.6508 22 1 -0.3633 0.5095 -0.8925 23 1 -0.3633 -1.0276 0.0050 24 1 -0.3634 0.5182 0.8874 25 1 3.2608 1.1681 -0.0339 26 1 3.2275 3.6474 0.2018 27 1 1.9577 5.7808 0.2768 28 1 -0.5225 5.6969 0.1596 29 1 -1.6545 3.5179 -0.0164 30 1 2.0296 -0.0863 2.2018 31 1 2.0485 -1.6264 3.0939 32 1 3.5656 -0.7352 2.8246 33 1 4.1573 -3.1478 4.2766 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847410675.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:39 Heat of formation + Delta-G solvation = 40.888913 kcal Electronic energy + Delta-G solvation = -17244.061025 eV Core-core repulsion = 14464.321138 eV Total energy + Delta-G solvation = -2779.739887 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03318 -38.53595 -34.88204 -34.38712 -32.25949 -31.54760 -30.58569 -26.91505 -26.37211 -24.83584 -23.30346 -23.06290 -20.88256 -18.03314 -16.92891 -16.64776 -16.23985 -15.56638 -15.22271 -14.50272 -14.20127 -14.01634 -13.92014 -13.29248 -13.20272 -12.49830 -12.26717 -12.12947 -11.72733 -11.47507 -11.38485 -11.07827 -10.97351 -10.80739 -10.42252 -10.23450 -9.88523 -9.68615 -9.14201 -9.05969 -8.42670 -7.90316 -7.84443 -6.27597 -3.81474 0.87264 1.35161 2.57580 3.17150 3.23000 3.27748 3.83307 4.04999 4.11842 4.41747 4.74881 4.85884 5.05277 5.11064 5.16240 5.21128 5.57433 5.68570 5.77578 5.87979 6.04052 6.21284 6.32444 6.33467 6.45663 6.60371 6.74648 6.97334 7.06270 7.15410 7.41147 7.53930 8.03184 8.10656 8.46756 9.15552 9.41383 9.95637 10.66226 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.041720 B = 0.005266 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.975091 B = 5316.234502 C = 5542.571769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.040 4.040 3 C -0.152 4.152 4 C 0.179 3.821 5 C -0.167 4.167 6 C -0.075 4.075 7 C -0.193 4.193 8 C 0.100 3.900 9 N -0.477 5.477 10 C 0.457 3.543 11 O -0.593 6.593 12 N -0.432 5.432 13 C 0.114 3.886 14 C -0.304 4.304 15 H 0.106 0.894 16 C 0.028 3.972 17 N -0.883 5.883 18 Si 0.933 3.067 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.272 1.272 22 H 0.082 0.918 23 H 0.047 0.953 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.153 0.847 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 13.934 -0.943 14.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C -0.171 4.171 4 C 0.045 3.955 5 C -0.187 4.187 6 C -0.101 4.101 7 C -0.213 4.213 8 C -0.058 4.058 9 N -0.187 5.187 10 C 0.245 3.755 11 O -0.481 6.481 12 N -0.148 5.148 13 C -0.029 4.029 14 C -0.432 4.432 15 H 0.123 0.877 16 C -0.174 4.174 17 N -0.523 5.523 18 Si 0.760 3.240 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.197 1.197 22 H 0.100 0.900 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.147 0.853 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.170 0.830 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.372 12.784 -1.252 13.924 hybrid contribution 1.096 0.327 0.348 1.195 sum -4.276 13.111 -0.904 13.820 Atomic orbital electron populations 1.20864 0.89903 1.00660 1.03153 1.22344 0.97326 0.93600 0.91241 1.21637 0.98451 0.88877 1.08178 1.20142 0.89141 0.93190 0.93042 1.22158 1.01339 0.92592 1.02614 1.21462 0.94282 0.98284 0.96063 1.22119 0.95380 0.99453 1.04338 1.22823 1.00307 0.87898 0.94788 1.68368 1.07571 1.29822 1.12966 1.17833 0.85425 0.87196 0.85007 1.90672 1.65295 1.59524 1.32567 1.43638 1.41809 1.22842 1.06508 1.21805 1.01621 0.93441 0.86075 1.19783 1.25129 1.02439 0.95811 0.87660 1.25373 0.98352 0.99156 0.94558 1.70110 1.42879 1.41463 0.97879 0.85880 0.80238 0.80707 0.77186 1.19804 1.20856 1.19739 0.90000 0.93349 0.90205 0.85313 0.84786 0.85201 0.85380 0.83005 0.95535 0.90816 0.91602 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 8.27 36.01 0.30 -1.33 16 2 C -0.04 -0.83 4.00 -102.53 -0.41 -1.24 16 3 C -0.15 -2.78 8.90 -37.11 -0.33 -3.11 16 4 C 0.18 2.83 6.67 -83.14 -0.55 2.27 16 5 C -0.17 -2.16 9.84 -38.97 -0.38 -2.54 16 6 C -0.08 -0.80 10.16 -39.33 -0.40 -1.20 16 7 C -0.19 -1.96 10.11 -39.29 -0.40 -2.36 16 8 C 0.10 1.18 11.18 -17.57 -0.20 0.98 16 9 N -0.48 -7.22 5.94 -9.91 -0.06 -7.28 16 10 C 0.46 11.81 6.90 -12.97 -0.09 11.72 16 11 O -0.59 -17.47 16.69 5.15 0.09 -17.38 16 12 N -0.43 -11.47 3.01 -123.80 -0.37 -11.85 16 13 C 0.11 2.69 8.72 59.84 0.52 3.21 16 14 C -0.30 -8.60 9.56 -15.06 -0.14 -8.74 16 15 H 0.11 3.11 7.17 -52.49 -0.38 2.74 16 16 C 0.03 0.75 5.42 -17.43 -0.09 0.65 16 17 N -0.88 -23.24 9.49 55.51 0.53 -22.72 16 18 Si 0.93 20.80 29.56 -169.99 -5.02 15.78 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H 0.08 1.42 7.09 -51.92 -0.37 1.05 16 23 H 0.05 0.91 7.98 -51.93 -0.41 0.49 16 24 H 0.08 1.36 7.09 -51.93 -0.37 0.99 16 25 H 0.13 2.31 8.06 -52.48 -0.42 1.88 16 26 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 27 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 28 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.03 0.55 5.76 -51.93 -0.30 0.25 16 31 H 0.07 1.84 6.96 -51.93 -0.36 1.47 16 32 H 0.07 1.61 7.14 -51.93 -0.37 1.24 16 33 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 283.55 15.07 4.27 4.27 Total: -1.00 -31.80 283.55 -6.56 -38.35 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -3.81 Total: 2.50 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.18 Total: -1.68 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.09 Total: -41.84 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.09 Total: -17.38 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.80 -6.56 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847410675.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.243 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds