Wall clock time and date at job start Mon Mar 30 2020 03:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34800 * 120.00188 * 2 1 4 4 C 1.47212 * 119.99822 * 168.64903 * 3 2 1 5 5 C 1.40263 * 120.58490 * 132.40028 * 4 3 2 6 6 C 1.38284 * 118.26917 * 179.97438 * 5 4 3 7 7 C 1.38395 * 119.33315 * 359.97438 * 6 5 4 8 8 N 1.31944 * 121.13668 * 0.02562 * 7 6 5 9 9 C 1.31655 * 121.90363 * 359.97438 * 8 7 6 10 10 C 1.46426 * 119.99424 * 180.02562 * 2 1 3 11 11 O 1.21700 * 119.99554 * 172.96788 * 10 2 1 12 12 N 1.34773 * 120.00708 * 352.96896 * 10 2 1 13 13 C 1.46496 * 120.00560 * 180.02562 * 12 10 2 14 14 C 1.50703 * 109.47503 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99613 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00205 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00332 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00028 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46983 * 90.00537 * 18 16 14 20 20 H 1.48497 * 109.47535 * 210.00382 * 18 16 14 21 21 H 1.48497 * 109.47345 * 330.00954 * 18 16 14 22 22 H 1.08995 * 109.47381 * 89.99623 * 1 2 3 23 23 H 1.09006 * 109.47125 * 209.99801 * 1 2 3 24 24 H 1.08998 * 109.46758 * 329.99486 * 1 2 3 25 25 H 1.07999 * 120.00102 * 348.65642 * 3 2 1 26 26 H 1.08007 * 120.86797 * 359.97438 * 5 4 3 27 27 H 1.08004 * 120.33693 * 180.02562 * 6 5 4 28 28 H 1.07997 * 119.43200 * 179.97438 * 7 6 5 29 29 H 1.08007 * 119.73313 * 180.28296 * 9 8 7 30 30 H 0.97002 * 119.99349 * 359.97438 * 12 10 2 31 31 H 1.09007 * 109.46931 * 299.99731 * 13 12 10 32 32 H 1.09003 * 109.47421 * 59.99532 * 13 12 10 33 33 H 0.97000 * 120.00330 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 3.6316 1.1798 0.2509 5 6 4.4937 1.9082 -0.5818 6 6 5.8477 1.8869 -0.3018 7 6 6.3048 1.1553 0.7805 8 7 5.4713 0.4788 1.5476 9 6 4.1739 0.4665 1.3240 10 6 2.2390 -1.2682 -0.0006 11 8 3.4491 -1.2721 -0.1296 12 7 1.5728 -2.4310 0.1418 13 6 2.3052 -3.6997 0.1418 14 6 1.3352 -4.8399 0.3157 15 1 0.2787 -4.6394 0.4166 16 6 1.7965 -6.1388 0.3470 17 7 0.9500 -7.1338 0.4993 18 14 3.6238 -6.4854 0.1732 19 1 4.2565 -6.4911 1.5167 20 1 3.8174 -7.8095 -0.4707 21 1 4.2502 -5.4313 -0.6643 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6569 2.0936 -0.1840 26 1 4.1100 2.4712 -1.4199 27 1 6.5415 2.4362 -0.9209 28 1 7.3620 1.1372 1.0003 29 1 3.5230 -0.0957 1.9772 30 1 0.6083 -2.4278 0.2450 31 1 2.8345 -3.8137 -0.8043 32 1 3.0226 -3.7052 0.9624 33 1 1.2745 -8.0476 0.5210 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847968735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:52 Heat of formation + Delta-G solvation = 15.184607 kcal Electronic energy + Delta-G solvation = -17115.405859 eV Core-core repulsion = 14334.551350 eV Total energy + Delta-G solvation = -2780.854509 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.14538 -38.87911 -34.93103 -34.34080 -32.55272 -32.11326 -30.97389 -27.99054 -26.81572 -23.86460 -23.18999 -22.41080 -20.95894 -19.08000 -17.29918 -16.74309 -16.14539 -16.05754 -15.35347 -14.74337 -14.52728 -14.00046 -13.85362 -13.27014 -13.23666 -13.05071 -12.92018 -12.50580 -12.36495 -12.24776 -12.06073 -11.44504 -11.02209 -10.77996 -10.01407 -9.95300 -9.54572 -9.50757 -9.42670 -8.99650 -8.78225 -8.14308 -8.05648 -6.22676 -4.25137 0.80092 1.52246 1.88244 3.26911 3.33624 3.42482 3.70461 3.97848 4.08109 4.33052 4.58165 4.82004 4.95304 5.06237 5.10932 5.12896 5.15180 5.34458 5.46592 5.59819 5.66644 5.87498 5.94754 6.14850 6.24025 6.35662 6.50051 6.81728 6.90407 7.05540 7.18857 7.37011 8.11198 8.23726 8.48158 8.72842 8.88787 9.37487 10.89190 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025208 B = 0.006253 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.479342 B = 4476.962150 C = 5362.911718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.154 4.154 3 C -0.057 4.057 4 C -0.099 4.099 5 C -0.068 4.068 6 C -0.185 4.185 7 C 0.095 3.905 8 N -0.490 5.490 9 C 0.171 3.829 10 C 0.527 3.473 11 O -0.546 6.546 12 N -0.695 5.695 13 C 0.220 3.780 14 C -0.544 4.544 15 H 0.079 0.921 16 C 0.079 3.921 17 N -0.892 5.892 18 Si 0.876 3.124 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.261 1.261 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.135 0.865 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.396 0.604 31 H 0.026 0.974 32 H 0.022 0.978 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 18.974 -1.413 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.157 4.157 3 C -0.077 4.077 4 C -0.101 4.101 5 C -0.093 4.093 6 C -0.205 4.205 7 C -0.060 4.060 8 N -0.199 5.199 9 C 0.013 3.987 10 C 0.314 3.686 11 O -0.427 6.427 12 N -0.344 5.344 13 C 0.098 3.902 14 C -0.582 4.582 15 H 0.097 0.903 16 C -0.125 4.125 17 N -0.529 5.529 18 Si 0.702 3.298 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.186 1.186 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.152 0.848 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.166 0.834 29 H 0.162 0.838 30 H 0.232 0.768 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.626 18.215 -0.787 18.589 hybrid contribution 0.040 -0.023 -0.920 0.921 sum 3.666 18.192 -1.706 18.636 Atomic orbital electron populations 1.20829 0.90452 1.03322 1.02855 1.22144 0.96551 0.93504 1.03501 1.21934 0.91961 0.97110 0.96718 1.19815 0.93918 0.98865 0.97469 1.21532 0.93225 0.96874 0.97707 1.21885 0.96102 1.02700 0.99807 1.22698 0.99404 0.92609 0.91303 1.67574 1.04143 1.18188 1.29959 1.22722 0.91046 0.91067 0.93902 1.18268 0.87519 0.84438 0.78397 1.90829 1.13661 1.87317 1.50879 1.46235 1.11281 1.06641 1.70209 1.19516 0.93225 0.80550 0.96940 1.21076 0.95005 0.89653 1.52487 0.90256 1.24777 0.98074 0.95816 0.93822 1.69877 1.34650 0.99469 1.48909 0.86830 0.85416 0.78192 0.79349 1.19766 1.20870 1.18573 0.90736 0.90746 0.91002 0.84764 0.85327 0.85322 0.83432 0.83799 0.76843 0.95661 0.95963 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.75 36.01 0.35 -0.87 16 2 C -0.15 -2.15 5.89 -102.55 -0.60 -2.75 16 3 C -0.06 -0.71 9.43 -37.16 -0.35 -1.06 16 4 C -0.10 -1.45 4.36 -104.91 -0.46 -1.91 16 5 C -0.07 -0.87 9.95 -38.80 -0.39 -1.26 16 6 C -0.19 -2.28 10.09 -39.51 -0.40 -2.68 16 7 C 0.10 1.35 11.17 -17.45 -0.19 1.15 16 8 N -0.49 -8.50 10.34 -12.83 -0.13 -8.63 16 9 C 0.17 2.91 7.96 -17.05 -0.14 2.78 16 10 C 0.53 10.04 6.92 -12.97 -0.09 9.95 16 11 O -0.55 -12.21 12.49 5.19 0.06 -12.14 16 12 N -0.70 -14.12 5.50 -62.88 -0.35 -14.47 16 13 C 0.22 5.46 4.50 -5.19 -0.02 5.43 16 14 C -0.54 -14.97 9.83 -34.44 -0.34 -15.31 16 15 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 16 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 17 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 18 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.79 6.46 -51.93 -0.34 0.46 16 24 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 26 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 27 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 29 H 0.14 2.48 7.45 -52.48 -0.39 2.09 16 30 H 0.40 7.08 6.31 -40.82 -0.26 6.82 16 31 H 0.03 0.67 7.20 -51.92 -0.37 0.29 16 32 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 285.43 15.07 4.30 4.30 Total: -1.00 -33.48 285.43 -6.60 -40.07 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.86 Total: 3.89 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.73 Total: -4.37 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.29 Total: -48.87 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.06 Total: -12.14 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.48 -6.60 -40.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847968735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.259 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds