Wall clock time and date at job start Mon Mar 30 2020 03:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34800 * 120.00188 * 2 1 4 4 C 1.47212 * 119.99822 * 168.64903 * 3 2 1 5 5 C 1.40263 * 120.58490 * 132.40028 * 4 3 2 6 6 C 1.38284 * 118.26917 * 179.97438 * 5 4 3 7 7 C 1.38395 * 119.33315 * 359.97438 * 6 5 4 8 8 N 1.31944 * 121.13668 * 0.02562 * 7 6 5 9 9 C 1.31655 * 121.90363 * 359.97438 * 8 7 6 10 10 C 1.46426 * 119.99424 * 180.02562 * 2 1 3 11 11 O 1.21700 * 119.99554 * 172.96788 * 10 2 1 12 12 N 1.34773 * 120.00708 * 352.96896 * 10 2 1 13 13 C 1.46496 * 120.00560 * 180.02562 * 12 10 2 14 14 C 1.50703 * 109.47503 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99613 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00205 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00332 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00028 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46983 * 90.00537 * 18 16 14 20 20 H 1.48497 * 109.47535 * 210.00382 * 18 16 14 21 21 H 1.48497 * 109.47345 * 330.00954 * 18 16 14 22 22 H 1.08995 * 109.47381 * 89.99623 * 1 2 3 23 23 H 1.09006 * 109.47125 * 209.99801 * 1 2 3 24 24 H 1.08998 * 109.46758 * 329.99486 * 1 2 3 25 25 H 1.07999 * 120.00102 * 348.65642 * 3 2 1 26 26 H 1.08007 * 120.86797 * 359.97438 * 5 4 3 27 27 H 1.08004 * 120.33693 * 180.02562 * 6 5 4 28 28 H 1.07997 * 119.43200 * 179.97438 * 7 6 5 29 29 H 1.08007 * 119.73313 * 180.28296 * 9 8 7 30 30 H 0.97002 * 119.99349 * 359.97438 * 12 10 2 31 31 H 1.09007 * 109.46931 * 299.99731 * 13 12 10 32 32 H 1.09003 * 109.47421 * 59.99532 * 13 12 10 33 33 H 0.97000 * 120.00330 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 3.6316 1.1798 0.2509 5 6 4.4937 1.9082 -0.5818 6 6 5.8477 1.8869 -0.3018 7 6 6.3048 1.1553 0.7805 8 7 5.4713 0.4788 1.5476 9 6 4.1739 0.4665 1.3240 10 6 2.2390 -1.2682 -0.0006 11 8 3.4491 -1.2721 -0.1296 12 7 1.5728 -2.4310 0.1418 13 6 2.3052 -3.6997 0.1418 14 6 1.3352 -4.8399 0.3157 15 1 0.2787 -4.6394 0.4166 16 6 1.7965 -6.1388 0.3470 17 7 0.9500 -7.1338 0.4993 18 14 3.6238 -6.4854 0.1732 19 1 4.2565 -6.4911 1.5167 20 1 3.8174 -7.8095 -0.4707 21 1 4.2502 -5.4313 -0.6643 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6569 2.0936 -0.1840 26 1 4.1100 2.4712 -1.4199 27 1 6.5415 2.4362 -0.9209 28 1 7.3620 1.1372 1.0003 29 1 3.5230 -0.0957 1.9772 30 1 0.6083 -2.4278 0.2450 31 1 2.8345 -3.8137 -0.8043 32 1 3.0226 -3.7052 0.9624 33 1 1.2745 -8.0476 0.5210 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847968735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:52 Heat of formation + Delta-G solvation = -8.777569 kcal Electronic energy + Delta-G solvation = -17116.444937 eV Core-core repulsion = 14334.551350 eV Total energy + Delta-G solvation = -2781.893587 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.36371 -40.23157 -36.39879 -35.81116 -34.51384 -33.25678 -32.10480 -29.90504 -27.75564 -25.33266 -24.39182 -23.77206 -22.50822 -20.62376 -18.80071 -18.20380 -17.51423 -17.24555 -16.93947 -16.31193 -16.11381 -15.45905 -14.99257 -14.81936 -14.39561 -14.36278 -14.16720 -13.93463 -13.68005 -13.54136 -13.20134 -13.06134 -12.75473 -12.42762 -11.98025 -11.68843 -11.15387 -10.95936 -10.82560 -10.50281 -10.19656 -9.84310 -9.18041 -8.43932 -6.50535 -0.28471 0.47359 0.79419 1.27829 1.30220 1.42576 2.23614 2.31033 2.50973 2.91575 2.97808 3.57446 3.77588 3.88004 4.04614 4.08003 4.22610 4.37132 4.59338 4.67531 4.75981 4.87180 4.90151 4.97632 5.06151 5.17525 5.22362 5.24896 5.36467 5.48648 5.55904 5.87623 6.06412 6.50048 6.82414 7.12303 7.13233 7.38502 8.70811 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025208 B = 0.006253 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.479342 B = 4476.962150 C = 5362.911718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.172 4.172 3 C -0.029 4.029 4 C -0.116 4.116 5 C -0.068 4.068 6 C -0.177 4.177 7 C 0.076 3.924 8 N -0.529 5.529 9 C 0.141 3.859 10 C 0.523 3.477 11 O -0.583 6.583 12 N -0.700 5.700 13 C 0.235 3.765 14 C -0.546 4.546 15 H 0.061 0.939 16 C 0.031 3.969 17 N -0.928 5.928 18 Si 0.934 3.066 19 H -0.267 1.267 20 H -0.269 1.269 21 H -0.266 1.266 22 H 0.086 0.914 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.185 0.815 26 H 0.166 0.834 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.123 0.877 30 H 0.407 0.593 31 H 0.009 0.991 32 H 0.007 0.993 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 21.574 -2.669 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.175 4.175 3 C -0.049 4.049 4 C -0.118 4.118 5 C -0.094 4.094 6 C -0.196 4.196 7 C -0.079 4.079 8 N -0.239 5.239 9 C -0.017 4.017 10 C 0.313 3.687 11 O -0.466 6.466 12 N -0.350 5.350 13 C 0.111 3.889 14 C -0.584 4.584 15 H 0.080 0.920 16 C -0.170 4.170 17 N -0.567 5.567 18 Si 0.758 3.242 19 H -0.192 1.192 20 H -0.194 1.194 21 H -0.190 1.190 22 H 0.104 0.896 23 H 0.082 0.918 24 H 0.121 0.879 25 H 0.202 0.798 26 H 0.184 0.816 27 H 0.185 0.815 28 H 0.188 0.812 29 H 0.140 0.860 30 H 0.244 0.756 31 H 0.027 0.973 32 H 0.025 0.975 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.947 20.835 -2.036 21.303 hybrid contribution -0.005 -0.725 -0.525 0.895 sum 3.942 20.110 -2.561 20.653 Atomic orbital electron populations 1.20861 0.87617 1.04377 1.03934 1.22052 0.98197 0.91015 1.06255 1.22411 0.90839 0.98326 0.93285 1.20110 0.95659 0.98867 0.97194 1.22036 0.93264 0.96126 0.97947 1.22338 0.96845 1.01487 0.98963 1.23227 1.00233 0.92633 0.91802 1.67472 1.04808 1.19790 1.31840 1.22585 0.91137 0.92542 0.95394 1.19129 0.87354 0.85552 0.76662 1.90811 1.15496 1.88014 1.52242 1.46075 1.11749 1.05819 1.71329 1.19042 0.92518 0.82026 0.95334 1.21275 0.94730 0.90673 1.51747 0.92043 1.25529 1.02028 0.95804 0.93647 1.69967 1.36527 1.00058 1.50118 0.85914 0.80550 0.78293 0.79439 1.19226 1.19403 1.19034 0.89566 0.91765 0.87882 0.79814 0.81643 0.81451 0.81154 0.85976 0.75550 0.97283 0.97533 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 9.75 71.24 0.69 -1.31 16 2 C -0.17 -4.48 5.89 -18.52 -0.11 -4.59 16 3 C -0.03 -0.62 9.43 23.84 0.22 -0.40 16 4 C -0.12 -3.21 4.36 -20.05 -0.09 -3.30 16 5 C -0.07 -1.52 9.95 22.77 0.23 -1.30 16 6 C -0.18 -3.83 10.09 22.32 0.23 -3.60 16 7 C 0.08 2.07 11.17 84.71 0.95 3.01 16 8 N -0.53 -18.68 10.34 -194.51 -2.01 -20.70 16 9 C 0.14 4.89 7.96 85.10 0.68 5.57 16 10 C 0.52 20.02 6.92 86.38 0.60 20.62 16 11 O -0.58 -26.51 12.49 -4.35 -0.05 -26.56 16 12 N -0.70 -28.99 5.50 -471.07 -2.59 -31.58 16 13 C 0.23 11.96 4.50 85.63 0.38 12.34 16 14 C -0.55 -30.79 9.83 25.60 0.25 -30.54 16 15 H 0.06 3.60 7.84 -2.91 -0.02 3.58 16 16 C 0.03 1.76 5.47 84.65 0.46 2.23 16 17 N -0.93 -55.96 13.96 21.45 0.30 -55.66 16 18 Si 0.93 45.52 27.47 68.60 1.88 47.41 16 19 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.27 -13.05 6.54 99.48 0.65 -12.40 16 22 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.06 1.28 6.46 -2.38 -0.02 1.27 16 24 H 0.10 1.21 8.08 -2.39 -0.02 1.19 16 25 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 26 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 27 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 28 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.12 4.51 7.45 -2.91 -0.02 4.49 16 30 H 0.41 14.80 6.31 -92.71 -0.59 14.21 16 31 H 0.01 0.50 7.20 -2.38 -0.02 0.48 16 32 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -75.32 285.43 2.50 -72.81 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.48 Total: 15.54 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 4.50 Total: -1.26 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -4.30 Total: -107.94 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.05 Total: -26.56 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -75.32 2.50 -72.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847968735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.036 kcal (2) G-P(sol) polarization free energy of solvation -75.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds