Wall clock time and date at job start Mon Mar 30 2020 04:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46602 * 2 1 4 4 C 1.50693 * 109.47361 * 239.99412 * 2 1 3 5 5 H 1.07993 * 120.00304 * 240.00305 * 4 2 1 6 6 C 1.37885 * 119.99650 * 60.00584 * 4 2 1 7 7 N 1.31516 * 120.00066 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99863 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47250 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47382 * 119.99529 * 8 6 4 11 11 H 1.48506 * 109.46830 * 239.99978 * 8 6 4 12 12 C 1.50700 * 109.46566 * 119.99556 * 2 1 3 13 13 O 1.21287 * 120.00190 * 34.29233 * 12 2 1 14 14 N 1.34782 * 119.99844 * 214.28863 * 12 2 1 15 15 C 1.46720 * 126.55037 * 174.67545 * 14 12 2 16 16 C 1.50473 * 107.65146 * 180.02562 * 15 14 12 17 17 C 1.38563 * 132.35192 * 179.97438 * 16 15 14 18 18 C 1.38258 * 118.99641 * 179.97438 * 17 16 15 19 19 N 1.31880 * 120.73284 * 0.27616 * 18 17 16 20 20 C 1.31889 * 121.81414 * 359.38816 * 19 18 17 21 21 C 1.38278 * 120.64272 * 0.65419 * 20 19 18 22 22 C 1.46696 * 126.55075 * 354.66950 * 14 12 2 23 23 H 1.09002 * 109.46353 * 63.53927 * 1 2 3 24 24 H 1.08998 * 109.46989 * 183.53008 * 1 2 3 25 25 H 1.08996 * 109.47539 * 303.53626 * 1 2 3 26 26 H 0.97002 * 119.99702 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.82350 * 60.46708 * 15 14 12 28 28 H 1.08999 * 109.81772 * 299.53059 * 15 14 12 29 29 H 1.08007 * 120.50271 * 359.97438 * 17 16 15 30 30 H 1.08002 * 119.63020 * 180.02562 * 18 17 16 31 31 H 1.07998 * 119.67870 * 180.26855 * 20 19 18 32 32 H 1.08999 * 109.81578 * 299.55102 * 22 14 12 33 33 H 1.08998 * 109.81152 * 60.45674 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3227 -1.1197 -4.0078 9 1 3.1486 -2.2858 -3.6036 10 1 1.1681 -1.5868 -4.8164 11 1 3.1476 -0.1859 -4.8159 12 6 2.0323 -0.7103 1.2306 13 8 1.4162 -1.6533 1.6804 14 7 3.1661 -0.2978 1.8312 15 6 3.7247 -0.8085 3.0882 16 6 4.9949 -0.0505 3.3642 17 6 5.9167 -0.1182 4.3965 18 6 7.0108 0.7268 4.3745 19 7 7.1763 1.5896 3.3910 20 6 6.3216 1.6755 2.3902 21 6 5.2038 0.8627 2.3464 22 6 4.0775 0.7475 1.3531 23 1 -0.3632 0.4579 -0.9201 24 1 -0.3633 -1.0257 0.0633 25 1 -0.3634 0.5677 0.8565 26 1 0.7084 1.1608 -3.4845 27 1 3.9422 -1.8721 2.9908 28 1 3.0152 -0.6481 3.9000 29 1 5.7826 -0.8203 5.2062 30 1 7.7359 0.6825 5.1737 31 1 6.4932 2.3918 1.6004 32 1 4.4739 0.4733 0.3755 33 1 3.5470 1.6972 1.2846 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857878851.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:11 Heat of formation + Delta-G solvation = 6.113174 kcal Electronic energy + Delta-G solvation = -17377.650118 eV Core-core repulsion = 14596.402242 eV Total energy + Delta-G solvation = -2781.247876 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.91767 -38.81896 -36.38401 -33.86183 -32.24280 -31.33867 -30.39149 -28.06049 -25.89679 -25.20466 -22.68615 -22.09526 -21.51265 -18.70533 -16.93066 -16.59511 -16.36438 -15.66947 -15.49384 -15.43671 -14.67531 -14.17913 -13.78394 -13.26704 -13.02408 -12.88091 -12.73850 -12.25589 -12.03005 -11.60780 -11.40364 -11.04916 -10.86699 -10.60376 -10.28953 -10.20005 -9.71902 -9.67089 -9.14284 -9.09623 -8.81778 -8.46560 -8.06007 -6.16380 -4.24831 1.01207 1.12778 3.22556 3.30396 3.33462 3.41359 3.57575 3.67992 4.18373 4.31365 4.34925 4.56770 4.90606 5.08887 5.15644 5.22245 5.58157 5.60043 5.69384 5.81345 5.84713 5.93112 5.99082 6.23939 6.56994 6.66446 6.77964 6.93186 7.03640 7.48886 7.68564 7.85975 7.87974 8.05926 8.20260 8.75644 9.01715 9.40891 10.89460 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.006197 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.416832 B = 4516.956006 C = 5038.574454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.038 3.962 3 H 0.046 0.954 4 C -0.510 4.510 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.552 3.448 13 O -0.554 6.554 14 N -0.625 5.625 15 C 0.145 3.855 16 C -0.061 4.061 17 C -0.151 4.151 18 C 0.094 3.906 19 N -0.483 5.483 20 C 0.122 3.878 21 C -0.149 4.149 22 C 0.155 3.845 23 H 0.092 0.908 24 H 0.040 0.960 25 H 0.010 0.990 26 H 0.264 0.736 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.096 0.904 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.267 1.992 10.197 13.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.017 3.983 3 H 0.064 0.936 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.346 3.654 13 O -0.430 6.430 14 N -0.361 5.361 15 C 0.022 3.978 16 C -0.069 4.069 17 C -0.172 4.172 18 C -0.063 4.063 19 N -0.191 5.191 20 C -0.035 4.035 21 C -0.152 4.152 22 C 0.031 3.969 23 H 0.110 0.890 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.154 0.846 30 H 0.176 0.824 31 H 0.178 0.822 32 H 0.113 0.887 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.453 2.108 10.251 14.103 hybrid contribution -0.309 -1.007 -0.736 1.285 sum 9.145 1.101 9.515 13.243 Atomic orbital electron populations 1.21668 0.95846 1.00110 1.00967 1.18900 0.94724 0.96236 0.88487 0.93630 1.20775 1.32200 1.12692 0.89163 0.92324 1.24902 0.94728 0.94887 0.98994 1.69883 1.35943 1.22622 1.23785 0.86411 0.78772 0.79677 0.82477 1.19695 1.20729 1.20780 1.21841 0.76292 0.83032 0.84255 1.90561 1.57165 1.28985 1.66314 1.48301 1.24909 1.39401 1.23534 1.20096 0.90921 0.97883 0.88875 1.20750 0.95882 0.95882 0.94408 1.21483 0.95022 1.01654 0.98994 1.22690 0.95875 0.91318 0.96408 1.67763 1.28912 1.20466 1.01953 1.22146 0.88670 0.96719 0.95996 1.21559 0.97833 0.97993 0.97789 1.20167 0.87686 0.92819 0.96251 0.88972 0.94108 0.97101 0.92632 0.90092 0.90202 0.84607 0.82407 0.82225 0.88651 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.73 37.16 0.32 -2.84 16 2 C 0.04 0.93 2.28 -92.92 -0.21 0.72 16 3 H 0.05 1.12 7.04 -51.93 -0.37 0.75 16 4 C -0.51 -13.62 8.55 -34.44 -0.29 -13.92 16 5 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -23.88 11.30 55.43 0.63 -23.26 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.55 12.83 6.81 -10.98 -0.07 12.76 16 13 O -0.55 -14.25 16.56 5.55 0.09 -14.16 16 14 N -0.62 -11.89 3.34 -176.28 -0.59 -12.48 16 15 C 0.15 2.28 6.91 -5.18 -0.04 2.24 16 16 C -0.06 -0.83 6.29 -104.58 -0.66 -1.48 16 17 C -0.15 -1.66 10.12 -39.45 -0.40 -2.06 16 18 C 0.09 1.01 11.19 -17.52 -0.20 0.82 16 19 N -0.48 -6.19 10.36 -13.22 -0.14 -6.33 16 20 C 0.12 1.54 11.19 -17.51 -0.20 1.34 16 21 C -0.15 -2.09 6.27 -104.62 -0.66 -2.74 16 22 C 0.15 2.50 6.23 -5.13 -0.03 2.47 16 23 H 0.09 2.41 5.98 -51.93 -0.31 2.10 16 24 H 0.04 1.03 7.73 -51.93 -0.40 0.63 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 30 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.09 1.34 7.72 -51.93 -0.40 0.93 16 LS Contribution 283.53 15.07 4.27 4.27 Total: -1.00 -30.66 283.53 -7.26 -37.92 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -3.98 Total: -0.54 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.52 Total: -1.01 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -0.10 Total: -42.07 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.09 Total: -14.16 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.66 -7.26 -37.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857878851.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.034 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds