Wall clock time and date at job start Mon Mar 30 2020 04:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46602 * 2 1 4 4 C 1.50693 * 109.47361 * 239.99412 * 2 1 3 5 5 H 1.07993 * 120.00304 * 240.00305 * 4 2 1 6 6 C 1.37885 * 119.99650 * 60.00584 * 4 2 1 7 7 N 1.31516 * 120.00066 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99863 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47250 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47382 * 119.99529 * 8 6 4 11 11 H 1.48506 * 109.46830 * 239.99978 * 8 6 4 12 12 C 1.50700 * 109.46566 * 119.99556 * 2 1 3 13 13 O 1.21287 * 120.00190 * 34.29233 * 12 2 1 14 14 N 1.34782 * 119.99844 * 214.28863 * 12 2 1 15 15 C 1.46720 * 126.55037 * 174.67545 * 14 12 2 16 16 C 1.50473 * 107.65146 * 180.02562 * 15 14 12 17 17 C 1.38563 * 132.35192 * 179.97438 * 16 15 14 18 18 C 1.38258 * 118.99641 * 179.97438 * 17 16 15 19 19 N 1.31880 * 120.73284 * 0.27616 * 18 17 16 20 20 C 1.31889 * 121.81414 * 359.38816 * 19 18 17 21 21 C 1.38278 * 120.64272 * 0.65419 * 20 19 18 22 22 C 1.46696 * 126.55075 * 354.66950 * 14 12 2 23 23 H 1.09002 * 109.46353 * 63.53927 * 1 2 3 24 24 H 1.08998 * 109.46989 * 183.53008 * 1 2 3 25 25 H 1.08996 * 109.47539 * 303.53626 * 1 2 3 26 26 H 0.97002 * 119.99702 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.82350 * 60.46708 * 15 14 12 28 28 H 1.08999 * 109.81772 * 299.53059 * 15 14 12 29 29 H 1.08007 * 120.50271 * 359.97438 * 17 16 15 30 30 H 1.08002 * 119.63020 * 180.02562 * 18 17 16 31 31 H 1.07998 * 119.67870 * 180.26855 * 20 19 18 32 32 H 1.08999 * 109.81578 * 299.55102 * 22 14 12 33 33 H 1.08998 * 109.81152 * 60.45674 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3227 -1.1197 -4.0078 9 1 3.1486 -2.2858 -3.6036 10 1 1.1681 -1.5868 -4.8164 11 1 3.1476 -0.1859 -4.8159 12 6 2.0323 -0.7103 1.2306 13 8 1.4162 -1.6533 1.6804 14 7 3.1661 -0.2978 1.8312 15 6 3.7247 -0.8085 3.0882 16 6 4.9949 -0.0505 3.3642 17 6 5.9167 -0.1182 4.3965 18 6 7.0108 0.7268 4.3745 19 7 7.1763 1.5896 3.3910 20 6 6.3216 1.6755 2.3902 21 6 5.2038 0.8627 2.3464 22 6 4.0775 0.7475 1.3531 23 1 -0.3632 0.4579 -0.9201 24 1 -0.3633 -1.0257 0.0633 25 1 -0.3634 0.5677 0.8565 26 1 0.7084 1.1608 -3.4845 27 1 3.9422 -1.8721 2.9908 28 1 3.0152 -0.6481 3.9000 29 1 5.7826 -0.8203 5.2062 30 1 7.7359 0.6825 5.1737 31 1 6.4932 2.3918 1.6004 32 1 4.4739 0.4733 0.3755 33 1 3.5470 1.6972 1.2846 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857878851.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:11 Heat of formation + Delta-G solvation = -12.898868 kcal Electronic energy + Delta-G solvation = -17378.474542 eV Core-core repulsion = 14596.402242 eV Total energy + Delta-G solvation = -2782.072300 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.05770 -40.38959 -37.79494 -35.86550 -33.41537 -32.58565 -32.23635 -29.28236 -27.43248 -27.06517 -24.21754 -23.16342 -22.83198 -20.37009 -18.59580 -18.35211 -17.46052 -17.06675 -17.03076 -16.58517 -16.27561 -15.54784 -15.24468 -14.59282 -14.55869 -14.07366 -14.04166 -13.96820 -13.56234 -13.34906 -12.91856 -12.80112 -12.62310 -12.42074 -12.25122 -12.11973 -11.13613 -10.84212 -10.75905 -10.60625 -10.45309 -10.11181 -9.50046 -8.19542 -6.35137 0.07214 0.15055 1.40617 1.43090 1.53349 1.73850 1.91133 2.42414 2.74152 3.08738 3.10265 3.25294 3.64215 3.89535 4.00390 4.27105 4.34168 4.41507 4.49337 4.53155 4.64336 4.72615 4.83739 4.89931 4.94629 5.02063 5.13501 5.32913 5.45439 5.64825 5.67182 5.83131 6.10655 6.44334 6.67570 6.94234 7.21364 7.34756 8.85995 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.006197 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.416832 B = 4516.956006 C = 5038.574454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.035 3.965 3 H 0.044 0.956 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.904 5.904 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.278 1.278 11 H -0.270 1.270 12 C 0.551 3.449 13 O -0.588 6.588 14 N -0.625 5.625 15 C 0.143 3.857 16 C -0.070 4.070 17 C -0.141 4.141 18 C 0.100 3.900 19 N -0.498 5.498 20 C 0.122 3.878 21 C -0.163 4.163 22 C 0.154 3.846 23 H 0.077 0.923 24 H 0.025 0.975 25 H 0.027 0.973 26 H 0.268 0.732 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.169 0.831 30 H 0.197 0.803 31 H 0.178 0.822 32 H 0.083 0.917 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.136 2.221 11.167 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.014 3.986 3 H 0.062 0.938 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.172 4.172 7 N -0.542 5.542 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.204 1.204 11 H -0.195 1.195 12 C 0.344 3.656 13 O -0.468 6.468 14 N -0.359 5.359 15 C 0.021 3.979 16 C -0.079 4.079 17 C -0.161 4.161 18 C -0.056 4.056 19 N -0.207 5.207 20 C -0.034 4.034 21 C -0.165 4.165 22 C 0.031 3.969 23 H 0.095 0.905 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.186 0.814 30 H 0.213 0.787 31 H 0.195 0.805 32 H 0.101 0.899 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.361 2.370 11.235 16.153 hybrid contribution -0.825 -1.046 -0.952 1.638 sum 10.536 1.324 10.283 14.782 Atomic orbital electron populations 1.21529 0.96181 0.99150 1.00868 1.18816 0.94605 0.96105 0.89063 0.93845 1.20876 1.32686 1.12618 0.90491 0.93850 1.25575 0.94725 0.95477 1.01388 1.69958 1.36248 1.23340 1.24675 0.85490 0.78307 0.78628 0.79151 1.20024 1.20386 1.19475 1.21373 0.77431 0.82694 0.84108 1.90528 1.58695 1.30303 1.67252 1.48117 1.23944 1.39466 1.24407 1.20205 0.92266 0.98089 0.87327 1.20693 0.95664 0.95882 0.95637 1.21824 0.93826 1.01756 0.98667 1.23363 0.96091 0.89813 0.96358 1.67860 1.28963 1.21349 1.02497 1.22393 0.87943 0.96575 0.96537 1.21338 0.98011 0.99574 0.97622 1.20183 0.88159 0.91993 0.96573 0.90476 0.95616 0.95398 0.92208 0.90262 0.89456 0.81375 0.78660 0.80546 0.89859 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.04 8.73 71.98 0.63 -5.41 16 2 C 0.04 1.78 2.28 -12.29 -0.03 1.75 16 3 H 0.04 2.19 7.04 -2.39 -0.02 2.17 16 4 C -0.53 -28.82 8.55 25.60 0.22 -28.60 16 5 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 6 C 0.03 1.55 5.30 84.66 0.45 2.00 16 7 N -0.90 -49.05 11.30 21.45 0.24 -48.81 16 8 Si 0.96 42.28 29.54 68.60 2.03 44.30 16 9 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 12 C 0.55 26.19 6.81 87.66 0.60 26.79 16 13 O -0.59 -30.98 16.56 -3.05 -0.05 -31.03 16 14 N -0.63 -24.05 3.34 -830.02 -2.77 -26.82 16 15 C 0.14 4.41 6.91 85.52 0.59 5.00 16 16 C -0.07 -1.78 6.29 -19.84 -0.12 -1.91 16 17 C -0.14 -2.59 10.12 22.35 0.23 -2.36 16 18 C 0.10 1.77 11.19 84.69 0.95 2.71 16 19 N -0.50 -11.33 10.36 -195.72 -2.03 -13.36 16 20 C 0.12 2.86 11.19 84.69 0.95 3.81 16 21 C -0.16 -4.37 6.27 -19.86 -0.12 -4.50 16 22 C 0.15 5.01 6.23 85.57 0.53 5.55 16 23 H 0.08 4.12 5.98 -2.39 -0.01 4.10 16 24 H 0.02 1.32 7.73 -2.39 -0.02 1.30 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 26 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 27 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 32 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.09 2.80 7.72 -2.39 -0.02 2.78 16 Total: -1.00 -65.85 283.53 3.39 -62.46 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.11 Total: 8.43 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 4.86 Total: 4.82 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -4.56 Total: -88.99 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.05 Total: -31.03 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -65.85 3.39 -62.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857878851.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.561 kcal (2) G-P(sol) polarization free energy of solvation -65.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds