Wall clock time and date at job start Mon Mar 30 2020 04:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.48770 * 2 1 4 4 C 1.54101 * 110.54830 * 237.14294 * 2 1 3 5 5 N 1.47049 * 103.86338 * 241.40766 * 4 2 1 6 6 C 1.39246 * 125.41055 * 180.02562 * 5 4 2 7 7 C 1.39482 * 119.83307 * 353.96912 * 6 5 4 8 8 C 1.36373 * 120.16565 * 179.76093 * 7 6 5 9 9 C 1.40871 * 119.82930 * 0.49321 * 8 7 6 10 10 C 1.41154 * 120.16236 * 179.78481 * 9 8 7 11 11 H 1.08000 * 120.00077 * 208.18197 * 10 9 8 12 12 C 1.39900 * 120.00356 * 28.18474 * 10 9 8 13 13 N 1.30882 * 119.99793 * 13.43865 * 12 10 9 14 14 Si 1.86793 * 120.00285 * 193.44246 * 12 10 9 15 15 H 1.48499 * 109.47105 * 59.99573 * 14 12 10 16 16 H 1.48493 * 109.47380 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46991 * 299.99730 * 14 12 10 18 18 C 1.40865 * 119.67086 * 359.76146 * 9 8 7 19 19 C 1.36365 * 119.83014 * 0.02562 * 18 9 8 20 20 C 1.33950 * 109.18137 * 359.97438 * 5 4 2 21 21 O 1.21575 * 123.04553 * 179.97438 * 20 5 4 22 22 N 1.33946 * 113.90966 * 0.02562 * 20 5 4 23 23 H 1.08995 * 109.47222 * 298.75338 * 1 2 3 24 24 H 1.09003 * 109.47442 * 178.74941 * 1 2 3 25 25 H 1.09005 * 109.47120 * 58.75387 * 1 2 3 26 26 H 1.09004 * 110.55163 * 0.02562 * 4 2 1 27 27 H 1.08997 * 110.55385 * 122.81041 * 4 2 1 28 28 H 1.07995 * 119.91764 * 0.02562 * 7 6 5 29 29 H 1.08002 * 120.08497 * 180.23362 * 8 7 6 30 30 H 0.96996 * 119.99793 * 180.02562 * 13 12 10 31 31 H 1.08005 * 120.08206 * 179.97438 * 18 9 8 32 32 H 1.08003 * 119.91486 * 179.97438 * 19 18 9 33 33 H 0.97006 * 125.40735 * 179.97438 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9115 1.0210 0.0000 4 6 2.0709 -0.7829 -1.2121 5 7 2.8344 -1.8848 -0.6077 6 6 3.5186 -2.8731 -1.3107 7 6 3.4088 -2.9388 -2.6996 8 6 4.0798 -3.9008 -3.3953 9 6 4.8770 -4.8361 -2.7066 10 6 5.5709 -5.8376 -3.4193 11 1 5.7919 -6.7827 -2.9455 12 6 5.9723 -5.6062 -4.7393 13 7 5.9460 -4.3923 -5.2280 14 14 6.5458 -7.0295 -5.8044 15 1 5.4512 -8.0250 -5.9316 16 1 6.9130 -6.5234 -7.1513 17 1 7.7287 -7.6719 -5.1771 18 6 4.9785 -4.7666 -1.3034 19 6 4.3052 -3.7962 -0.6218 20 6 2.7680 -1.7862 0.7265 21 8 3.3126 -2.5723 1.4772 22 7 2.0465 -0.7437 1.1586 23 1 -0.3633 0.4943 0.9009 24 1 -0.3634 -1.0274 -0.0224 25 1 -0.3634 0.5331 -0.8786 26 1 1.2495 -1.1713 -1.8143 27 1 2.7231 -0.1514 -1.8155 28 1 2.7944 -2.2233 -3.2258 29 1 3.9969 -3.9482 -4.4711 30 1 6.2240 -4.2319 -6.1433 31 1 5.5875 -5.4805 -0.7686 32 1 4.3817 -3.7419 0.4541 33 1 1.8895 -0.5156 2.0883 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953004459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:12 Heat of formation + Delta-G solvation = 7.416316 kcal Electronic energy + Delta-G solvation = -17339.987517 eV Core-core repulsion = 14558.796150 eV Total energy + Delta-G solvation = -2781.191367 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.98819 -37.50950 -36.34603 -34.40491 -32.80214 -30.73504 -29.55834 -29.06964 -26.36218 -24.86143 -22.18061 -21.80984 -20.30451 -19.58440 -17.44849 -17.30542 -16.23539 -15.90454 -15.14614 -14.79748 -14.26572 -13.93189 -13.64516 -12.96722 -12.95547 -12.69122 -12.61571 -12.16772 -12.09712 -11.74110 -11.43527 -11.25340 -11.07936 -10.91224 -10.58271 -10.17676 -9.54788 -9.43920 -9.09585 -8.94101 -8.73212 -7.53952 -6.80728 -6.65992 -4.23115 2.69825 2.99817 3.08863 3.10303 3.13210 3.16579 3.68950 3.98310 4.13852 4.36662 4.67410 4.85395 4.94279 5.39576 5.43903 5.51158 5.68564 5.76295 5.86009 5.98987 6.21817 6.59267 6.81375 7.01789 7.09761 7.26415 7.29889 7.36714 7.67914 7.74126 7.98715 8.09999 8.26000 8.36224 8.64598 8.94429 8.94960 9.10774 10.27048 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.048428 B = 0.005249 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.041989 B = 5332.975421 C = 5770.401018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 H 0.089 0.911 4 C 0.093 3.907 5 N -0.547 5.547 6 C 0.040 3.960 7 C -0.126 4.126 8 C -0.140 4.140 9 C 0.097 3.903 10 C -0.462 4.462 11 H 0.076 0.924 12 C 0.074 3.926 13 N -0.804 5.804 14 Si 0.909 3.091 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.202 4.202 19 C -0.114 4.114 20 C 0.689 3.311 21 O -0.580 6.580 22 N -0.744 5.744 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.279 0.721 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 9.132 3.504 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.013 3.987 3 H 0.107 0.893 4 C -0.031 4.031 5 N -0.274 5.274 6 C -0.051 4.051 7 C -0.147 4.147 8 C -0.160 4.160 9 C 0.095 3.905 10 C -0.492 4.492 11 H 0.094 0.906 12 C -0.142 4.142 13 N -0.430 5.430 14 Si 0.734 3.266 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.222 4.222 19 C -0.134 4.134 20 C 0.391 3.609 21 O -0.459 6.459 22 N -0.407 5.407 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.140 0.860 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.147 0.853 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -8.370 8.774 3.566 12.639 hybrid contribution 0.152 -0.232 -0.309 0.416 sum -8.218 8.542 3.257 12.292 Atomic orbital electron populations 1.22187 0.94049 1.03052 1.02597 1.21882 0.94949 0.96474 0.85401 0.89339 1.22456 0.96404 0.88663 0.95580 1.44063 1.51341 1.27392 1.04613 1.17018 1.03814 0.93903 0.90345 1.20061 1.02863 1.00786 0.90997 1.20876 0.98225 0.97224 0.99714 1.17670 0.89827 0.92051 0.91001 1.19476 1.32010 1.01144 0.96554 0.90552 1.25869 0.93878 0.96269 0.98201 1.69813 1.36483 1.20644 1.16096 0.86350 0.79847 0.81713 0.78664 1.18943 1.20444 1.19092 1.20732 1.05407 1.01467 0.94639 1.20819 0.97118 0.95164 1.00342 1.15891 0.80289 0.81924 0.82832 1.90814 1.52087 1.45187 1.57789 1.45239 1.56652 1.30265 1.08536 0.91921 0.91793 0.90958 0.89856 0.89927 0.89160 0.86001 0.91009 0.88501 0.85284 0.73534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.41 37.16 0.35 -0.94 16 2 C 0.12 1.24 4.38 -67.05 -0.29 0.95 16 3 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 4 C 0.09 1.26 6.09 -3.17 -0.02 1.25 16 5 N -0.55 -10.63 3.13 -118.09 -0.37 -11.00 16 6 C 0.04 0.94 6.63 -83.57 -0.55 0.38 16 7 C -0.13 -2.93 9.42 -39.79 -0.37 -3.30 16 8 C -0.14 -3.64 8.60 -39.26 -0.34 -3.97 16 9 C 0.10 2.65 5.55 -106.80 -0.59 2.05 16 10 C -0.46 -12.44 9.04 -37.85 -0.34 -12.78 16 11 H 0.08 1.98 7.88 -52.49 -0.41 1.57 16 12 C 0.07 1.87 5.20 -17.33 -0.09 1.78 16 13 N -0.80 -20.86 10.94 55.55 0.61 -20.25 16 14 Si 0.91 18.89 29.58 -169.99 -5.03 13.86 16 15 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 16 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 C -0.20 -5.28 9.74 -39.26 -0.38 -5.66 16 19 C -0.11 -2.89 9.21 -39.79 -0.37 -3.26 16 20 C 0.69 13.32 8.52 -88.40 -0.75 12.56 16 21 O -0.58 -13.47 14.71 5.30 0.08 -13.39 16 22 N -0.74 -10.02 6.03 -58.21 -0.35 -10.37 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 1.04 7.69 -51.93 -0.40 0.64 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 1.80 7.25 -52.49 -0.38 1.42 16 29 H 0.12 3.21 6.27 -52.49 -0.33 2.88 16 30 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 31 H 0.10 2.40 8.06 -52.48 -0.42 1.98 16 32 H 0.13 3.32 5.23 -52.48 -0.27 3.04 16 33 H 0.42 4.65 8.96 -40.82 -0.37 4.28 16 LS Contribution 277.85 15.07 4.19 4.19 Total: -1.00 -31.55 277.85 -8.47 -40.02 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -3.83 Total: 7.88 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -3.76 Total: -10.94 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -0.11 Total: -41.62 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.55 -8.47 -40.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953004459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.437 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds