Wall clock time and date at job start Mon Mar 30 2020 04:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.48770 * 2 1 4 4 C 1.54101 * 110.54830 * 237.14294 * 2 1 3 5 5 N 1.47049 * 103.86338 * 241.40766 * 4 2 1 6 6 C 1.39246 * 125.41055 * 180.02562 * 5 4 2 7 7 C 1.39482 * 119.83307 * 353.96912 * 6 5 4 8 8 C 1.36373 * 120.16565 * 179.76093 * 7 6 5 9 9 C 1.40871 * 119.82930 * 0.49321 * 8 7 6 10 10 C 1.41154 * 120.16236 * 179.78481 * 9 8 7 11 11 H 1.08000 * 120.00077 * 208.18197 * 10 9 8 12 12 C 1.39900 * 120.00356 * 28.18474 * 10 9 8 13 13 N 1.30882 * 119.99793 * 13.43865 * 12 10 9 14 14 Si 1.86793 * 120.00285 * 193.44246 * 12 10 9 15 15 H 1.48499 * 109.47105 * 59.99573 * 14 12 10 16 16 H 1.48493 * 109.47380 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46991 * 299.99730 * 14 12 10 18 18 C 1.40865 * 119.67086 * 359.76146 * 9 8 7 19 19 C 1.36365 * 119.83014 * 0.02562 * 18 9 8 20 20 C 1.33950 * 109.18137 * 359.97438 * 5 4 2 21 21 O 1.21575 * 123.04553 * 179.97438 * 20 5 4 22 22 N 1.33946 * 113.90966 * 0.02562 * 20 5 4 23 23 H 1.08995 * 109.47222 * 298.75338 * 1 2 3 24 24 H 1.09003 * 109.47442 * 178.74941 * 1 2 3 25 25 H 1.09005 * 109.47120 * 58.75387 * 1 2 3 26 26 H 1.09004 * 110.55163 * 0.02562 * 4 2 1 27 27 H 1.08997 * 110.55385 * 122.81041 * 4 2 1 28 28 H 1.07995 * 119.91764 * 0.02562 * 7 6 5 29 29 H 1.08002 * 120.08497 * 180.23362 * 8 7 6 30 30 H 0.96996 * 119.99793 * 180.02562 * 13 12 10 31 31 H 1.08005 * 120.08206 * 179.97438 * 18 9 8 32 32 H 1.08003 * 119.91486 * 179.97438 * 19 18 9 33 33 H 0.97006 * 125.40735 * 179.97438 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9115 1.0210 0.0000 4 6 2.0709 -0.7829 -1.2121 5 7 2.8344 -1.8848 -0.6077 6 6 3.5186 -2.8731 -1.3107 7 6 3.4088 -2.9388 -2.6996 8 6 4.0798 -3.9008 -3.3953 9 6 4.8770 -4.8361 -2.7066 10 6 5.5709 -5.8376 -3.4193 11 1 5.7919 -6.7827 -2.9455 12 6 5.9723 -5.6062 -4.7393 13 7 5.9460 -4.3923 -5.2280 14 14 6.5458 -7.0295 -5.8044 15 1 5.4512 -8.0250 -5.9316 16 1 6.9130 -6.5234 -7.1513 17 1 7.7287 -7.6719 -5.1771 18 6 4.9785 -4.7666 -1.3034 19 6 4.3052 -3.7962 -0.6218 20 6 2.7680 -1.7862 0.7265 21 8 3.3126 -2.5723 1.4772 22 7 2.0465 -0.7437 1.1586 23 1 -0.3633 0.4943 0.9009 24 1 -0.3634 -1.0274 -0.0224 25 1 -0.3634 0.5331 -0.8786 26 1 1.2495 -1.1713 -1.8143 27 1 2.7231 -0.1514 -1.8155 28 1 2.7944 -2.2233 -3.2258 29 1 3.9969 -3.9482 -4.4711 30 1 6.2240 -4.2319 -6.1433 31 1 5.5875 -5.4805 -0.7686 32 1 4.3817 -3.7419 0.4541 33 1 1.8895 -0.5156 2.0883 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953004459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:12 Heat of formation + Delta-G solvation = -13.200140 kcal Electronic energy + Delta-G solvation = -17340.881514 eV Core-core repulsion = 14558.796150 eV Total energy + Delta-G solvation = -2782.085364 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.35899 -39.35975 -37.78214 -36.09963 -34.49781 -31.76142 -31.46983 -30.89023 -27.69388 -26.47926 -23.79273 -23.20920 -21.89128 -21.23504 -19.26217 -18.79969 -17.57325 -17.38279 -16.96584 -16.27202 -15.60485 -15.54321 -14.82904 -14.68039 -14.56687 -14.08143 -14.05234 -13.68725 -13.51587 -13.19302 -12.85538 -12.76903 -12.59881 -12.36997 -12.17453 -11.91263 -11.45419 -11.20718 -10.77395 -10.60242 -10.12399 -9.51159 -8.67821 -8.52909 -6.22851 0.85034 1.10626 1.41102 1.50071 1.53162 1.67072 2.14106 2.25273 2.79808 2.99672 3.42204 3.72141 3.99018 4.03561 4.32072 4.45811 4.55915 4.68001 4.70382 4.91185 4.93100 5.02830 5.14528 5.26303 5.35095 5.39950 5.49952 5.69643 5.92379 6.01312 6.10653 6.29408 6.41341 6.65489 6.70370 6.96181 7.02016 7.59457 8.39697 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.048428 B = 0.005249 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.041989 B = 5332.975421 C = 5770.401018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.124 3.876 3 H 0.124 0.876 4 C 0.080 3.920 5 N -0.560 5.560 6 C 0.053 3.947 7 C -0.120 4.120 8 C -0.154 4.154 9 C 0.066 3.934 10 C -0.500 4.500 11 H 0.071 0.929 12 C 0.036 3.964 13 N -0.831 5.831 14 Si 0.984 3.016 15 H -0.261 1.261 16 H -0.265 1.265 17 H -0.264 1.264 18 C -0.219 4.219 19 C -0.133 4.133 20 C 0.678 3.322 21 O -0.629 6.629 22 N -0.724 5.724 23 H 0.080 0.920 24 H 0.044 0.956 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.114 0.886 30 H 0.288 0.712 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 11.061 2.671 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.020 3.980 3 H 0.142 0.858 4 C -0.042 4.042 5 N -0.287 5.287 6 C -0.039 4.039 7 C -0.141 4.141 8 C -0.174 4.174 9 C 0.064 3.936 10 C -0.530 4.530 11 H 0.090 0.910 12 C -0.178 4.178 13 N -0.458 5.458 14 Si 0.805 3.195 15 H -0.185 1.185 16 H -0.189 1.189 17 H -0.189 1.189 18 C -0.239 4.239 19 C -0.154 4.154 20 C 0.379 3.621 21 O -0.512 6.512 22 N -0.387 5.387 23 H 0.099 0.901 24 H 0.063 0.937 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.145 0.855 29 H 0.132 0.868 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -9.890 10.784 2.755 14.890 hybrid contribution 0.517 -0.678 0.053 0.854 sum -9.373 10.106 2.808 14.067 Atomic orbital electron populations 1.22168 0.91742 1.02522 1.04794 1.22219 0.96587 0.96926 0.82259 0.85802 1.22950 0.96542 0.87388 0.97318 1.44123 1.51489 1.27927 1.05124 1.17072 1.02357 0.93787 0.90725 1.20288 1.02331 1.00517 0.90938 1.20901 0.98950 0.98116 0.99480 1.17981 0.90954 0.93200 0.91482 1.19699 1.33873 1.01273 0.98198 0.91049 1.26683 0.93395 0.99002 0.98713 1.69850 1.36753 1.22346 1.16853 0.85230 0.79265 0.78026 0.77012 1.18508 1.18926 1.18853 1.20832 1.06185 1.02148 0.94767 1.20897 0.98275 0.96070 1.00110 1.16254 0.80563 0.82687 0.82594 1.90771 1.54159 1.47339 1.58893 1.45160 1.54794 1.28473 1.10225 0.90075 0.93684 0.88438 0.88399 0.88533 0.85473 0.86786 0.90121 0.88751 0.86102 0.71980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.41 71.98 0.68 -1.10 16 2 C 0.12 2.07 4.38 45.26 0.20 2.27 16 3 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 4 C 0.08 1.91 6.09 86.65 0.53 2.43 16 5 N -0.56 -21.03 3.13 -646.27 -2.03 -23.05 16 6 C 0.05 2.49 6.63 38.56 0.26 2.75 16 7 C -0.12 -5.49 9.42 22.13 0.21 -5.29 16 8 C -0.15 -8.14 8.60 22.48 0.19 -7.94 16 9 C 0.07 3.76 5.55 -21.28 -0.12 3.64 16 10 C -0.50 -27.95 9.04 23.39 0.21 -27.74 16 11 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 12 C 0.04 1.83 5.20 85.24 0.44 2.28 16 13 N -0.83 -43.49 10.94 21.82 0.24 -43.25 16 14 Si 0.98 38.80 29.58 68.60 2.03 40.83 16 15 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 16 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 C -0.22 -12.03 9.74 22.48 0.22 -11.81 16 19 C -0.13 -6.98 9.21 22.13 0.20 -6.78 16 20 C 0.68 25.63 8.52 179.57 1.53 27.16 16 21 O -0.63 -29.75 14.71 -3.95 -0.06 -29.80 16 22 N -0.72 -17.60 6.03 -456.80 -2.75 -20.36 16 23 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.10 2.06 7.69 -2.38 -0.02 2.04 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.13 4.76 7.25 -2.91 -0.02 4.74 16 29 H 0.11 6.11 6.27 -2.91 -0.02 6.10 16 30 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 31 H 0.09 5.01 8.06 -2.91 -0.02 4.98 16 32 H 0.12 6.52 5.23 -2.91 -0.02 6.51 16 33 H 0.44 8.42 8.96 -92.70 -0.83 7.59 16 Total: -1.00 -71.91 277.85 2.28 -69.63 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.30 Total: 26.13 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 4.55 Total: -20.12 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -4.54 Total: -86.66 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.06 Total: -29.80 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -71.91 2.28 -69.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953004459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.426 kcal (2) G-P(sol) polarization free energy of solvation -71.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds