Wall clock time and date at job start Mon Mar 30 2020 03:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30454 * 119.99786 * 2 1 4 4 N 1.40098 * 120.00107 * 0.02562 * 3 2 1 5 5 C 1.34775 * 119.99698 * 179.97438 * 4 3 2 6 6 O 1.21915 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.41052 * 120.00088 * 179.97438 * 5 4 3 8 8 H 1.08000 * 119.99834 * 0.02562 * 7 5 4 9 9 C 1.40226 * 120.00092 * 180.02562 * 7 5 4 10 10 N 1.30586 * 120.00017 * 0.02562 * 9 7 5 11 11 Si 1.86808 * 119.99872 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47254 * 89.99937 * 11 9 7 13 13 H 1.48497 * 109.47023 * 210.00307 * 11 9 7 14 14 H 1.48503 * 109.47004 * 329.99886 * 11 9 7 15 15 C 1.47050 * 119.99855 * 180.02562 * 2 1 3 16 16 C 1.40014 * 120.17829 * 180.02562 * 15 2 1 17 17 C 1.37823 * 119.81002 * 180.27289 * 16 15 2 18 18 C 1.38481 * 120.18252 * 359.50885 * 17 16 15 19 19 C 1.50701 * 119.81226 * 180.23622 * 18 17 16 20 20 C 1.38476 * 120.36756 * 0.46814 * 18 17 16 21 21 C 1.37821 * 120.18337 * 359.78853 * 20 18 17 22 22 H 1.08998 * 109.47129 * 269.99700 * 1 2 3 23 23 H 1.09002 * 109.46985 * 29.99106 * 1 2 3 24 24 H 1.08992 * 109.47078 * 149.99326 * 1 2 3 25 25 H 0.96991 * 120.00315 * 359.97438 * 4 3 2 26 26 H 0.97008 * 119.99890 * 179.97438 * 10 9 7 27 27 H 1.08002 * 120.09241 * 359.97438 * 16 15 2 28 28 H 1.07998 * 119.90863 * 179.74001 * 17 16 15 29 29 H 1.09001 * 109.46846 * 270.22974 * 19 18 17 30 30 H 1.08989 * 109.47294 * 30.22908 * 19 18 17 31 31 H 1.09005 * 109.46636 * 150.23324 * 19 18 17 32 32 H 1.08001 * 119.90263 * 179.76411 * 20 18 17 33 33 H 1.08002 * 120.08845 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1298 0.0000 4 7 1.4587 2.3431 0.0005 5 6 2.1326 3.5102 0.0011 6 8 3.3518 3.5102 0.0006 7 6 1.4274 4.7318 0.0011 8 1 0.3475 4.7318 0.0011 9 6 2.1286 5.9462 0.0011 10 7 3.4345 5.9461 0.0006 11 14 1.1946 7.5640 0.0018 12 1 0.9476 7.9924 1.4020 13 1 1.9969 8.5990 -0.6984 14 1 -0.1032 7.3866 -0.6978 15 6 2.2422 -1.2735 -0.0006 16 6 3.6424 -1.2779 0.0000 17 6 4.3238 -2.4759 -0.0063 18 6 3.6275 -3.6729 -0.0028 19 6 4.3810 -4.9780 -0.0043 20 6 2.2427 -3.6773 -0.0028 21 6 1.5460 -2.4882 -0.0019 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3633 0.8901 -0.5137 24 1 -0.3633 -0.8899 -0.5139 25 1 0.4888 2.3431 0.0005 26 1 3.9195 6.7862 0.0002 27 1 4.1868 -0.3452 0.0004 28 1 5.4037 -2.4811 -0.0101 29 1 4.5627 -5.2915 -1.0323 30 1 5.3334 -4.8483 0.5096 31 1 3.7919 -5.7382 0.5087 32 1 1.7073 -4.6153 -0.0039 33 1 0.4660 -2.4934 -0.0023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083968517.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:31 Heat of formation + Delta-G solvation = 17.171986 kcal Electronic energy + Delta-G solvation = -16543.930488 eV Core-core repulsion = 13763.162158 eV Total energy + Delta-G solvation = -2780.768330 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.21470 -37.72010 -35.84525 -33.11780 -32.47205 -30.91855 -30.63139 -28.21569 -26.93038 -26.01928 -22.28415 -22.02738 -20.38129 -18.76445 -17.80843 -16.09139 -15.67101 -15.46531 -14.86109 -14.26352 -14.10041 -14.04806 -13.61063 -13.40187 -13.13377 -12.71161 -12.65506 -12.21672 -11.93702 -11.79188 -11.43019 -11.21315 -11.08358 -10.79019 -10.64607 -10.55618 -10.37105 -9.40276 -9.04640 -8.75497 -8.63184 -7.76602 -7.17895 -6.39812 -4.94575 1.17424 1.63371 2.84965 3.05758 3.10633 3.14758 3.74445 4.09482 4.10847 4.45150 4.85129 4.97112 4.99670 5.20048 5.32907 5.43491 5.54710 5.59204 5.70521 5.74534 5.79320 5.79717 5.90715 6.10676 6.25143 6.29854 6.52404 6.72986 6.80995 6.97232 7.19844 7.20779 7.83204 7.99346 8.69773 8.76583 9.29915 10.39494 10.64604 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.051989 B = 0.004196 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.445643 B = 6671.867425 C = 7189.867060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.039 3.961 3 N -0.186 5.186 4 N -0.587 5.587 5 C 0.557 3.443 6 O -0.553 6.553 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.088 3.912 10 N -0.745 5.745 11 Si 0.917 3.083 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.262 1.262 15 C -0.015 4.015 16 C -0.088 4.088 17 C -0.121 4.121 18 C -0.096 4.096 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.109 4.109 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.370 0.630 26 H 0.274 0.726 27 H 0.136 0.864 28 H 0.121 0.879 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -15.632 -0.012 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 N 0.004 4.996 4 N -0.334 5.334 5 C 0.366 3.634 6 O -0.432 6.432 7 C -0.574 4.574 8 H 0.089 0.911 9 C -0.136 4.136 10 N -0.372 5.372 11 Si 0.741 3.259 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.186 1.186 15 C -0.017 4.017 16 C -0.108 4.108 17 C -0.139 4.139 18 C -0.097 4.097 19 C -0.168 4.168 20 C -0.142 4.142 21 C -0.129 4.129 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.207 0.793 26 H 0.085 0.915 27 H 0.154 0.846 28 H 0.139 0.861 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.137 0.863 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.751 -14.851 -0.016 15.104 hybrid contribution -1.855 0.622 -0.001 1.957 sum -4.606 -14.229 -0.018 14.957 Atomic orbital electron populations 1.21088 0.93082 1.03007 1.02600 1.22829 0.92974 0.91518 1.07646 1.74875 1.26989 0.92468 1.05310 1.48081 1.07659 1.01771 1.75887 1.16905 0.87849 0.80385 0.78299 1.90703 1.13483 1.85324 1.53706 1.19819 0.94386 0.89565 1.53633 0.91123 1.25769 0.94683 1.00669 0.92434 1.70006 1.07357 1.28041 1.31835 0.86211 0.80108 0.80477 0.79102 1.19420 1.20127 1.18646 1.18352 0.92726 0.90384 1.00238 1.21547 0.93572 0.98712 0.97000 1.20975 0.99708 0.91776 1.01459 1.19992 0.93925 0.95140 1.00677 1.20763 0.99803 0.94245 1.02000 1.20814 0.93483 0.97597 1.02314 1.21223 0.99669 0.91316 1.00692 0.90979 0.91634 0.90783 0.79326 0.91473 0.84602 0.86145 0.91471 0.91740 0.91853 0.86300 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.04 36.01 0.33 -1.62 16 2 C 0.04 0.71 7.11 -79.61 -0.57 0.14 16 3 N -0.19 -4.31 10.19 35.11 0.36 -3.96 16 4 N -0.59 -14.37 6.11 28.99 0.18 -14.20 16 5 C 0.56 16.45 7.67 -15.19 -0.12 16.34 16 6 O -0.55 -18.67 15.21 5.00 0.08 -18.60 16 7 C -0.54 -15.02 9.28 -37.77 -0.35 -15.37 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 9 C 0.09 2.40 5.50 -17.33 -0.10 2.31 16 10 N -0.75 -21.96 11.71 55.56 0.65 -21.31 16 11 Si 0.92 19.45 29.56 -169.99 -5.03 14.42 16 12 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 13 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 15 C -0.01 -0.24 5.88 -105.00 -0.62 -0.86 16 16 C -0.09 -1.48 9.59 -39.07 -0.37 -1.85 16 17 C -0.12 -1.67 9.68 -39.64 -0.38 -2.06 16 18 C -0.10 -1.16 5.89 -104.44 -0.62 -1.77 16 19 C -0.11 -0.98 10.00 36.01 0.36 -0.62 16 20 C -0.12 -1.45 9.68 -39.65 -0.38 -1.83 16 21 C -0.11 -1.42 9.37 -39.07 -0.37 -1.78 16 22 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.94 6.36 -51.93 -0.33 0.61 16 24 H 0.07 0.83 6.46 -51.93 -0.34 0.50 16 25 H 0.37 7.68 6.41 -182.61 -1.17 6.51 16 26 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 27 H 0.14 2.58 7.55 -52.49 -0.40 2.18 16 28 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.12 1.32 6.36 -52.49 -0.33 0.99 16 LS Contribution 290.62 15.07 4.38 4.38 Total: -1.00 -35.01 290.62 -7.21 -42.22 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.64 Total: 6.03 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.18 Total: -8.98 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 1.19 Total: -39.46 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.08 Total: -18.60 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.01 -7.21 -42.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083968517.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.391 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds