Wall clock time and date at job start Mon Mar 30 2020 03:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30454 * 119.99786 * 2 1 4 4 N 1.40098 * 120.00107 * 0.02562 * 3 2 1 5 5 C 1.34775 * 119.99698 * 179.97438 * 4 3 2 6 6 O 1.21915 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.41052 * 120.00088 * 179.97438 * 5 4 3 8 8 H 1.08000 * 119.99834 * 0.02562 * 7 5 4 9 9 C 1.40226 * 120.00092 * 180.02562 * 7 5 4 10 10 N 1.30586 * 120.00017 * 0.02562 * 9 7 5 11 11 Si 1.86808 * 119.99872 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47254 * 89.99937 * 11 9 7 13 13 H 1.48497 * 109.47023 * 210.00307 * 11 9 7 14 14 H 1.48503 * 109.47004 * 329.99886 * 11 9 7 15 15 C 1.47050 * 119.99855 * 180.02562 * 2 1 3 16 16 C 1.40014 * 120.17829 * 180.02562 * 15 2 1 17 17 C 1.37823 * 119.81002 * 180.27289 * 16 15 2 18 18 C 1.38481 * 120.18252 * 359.50885 * 17 16 15 19 19 C 1.50701 * 119.81226 * 180.23622 * 18 17 16 20 20 C 1.38476 * 120.36756 * 0.46814 * 18 17 16 21 21 C 1.37821 * 120.18337 * 359.78853 * 20 18 17 22 22 H 1.08998 * 109.47129 * 269.99700 * 1 2 3 23 23 H 1.09002 * 109.46985 * 29.99106 * 1 2 3 24 24 H 1.08992 * 109.47078 * 149.99326 * 1 2 3 25 25 H 0.96991 * 120.00315 * 359.97438 * 4 3 2 26 26 H 0.97008 * 119.99890 * 179.97438 * 10 9 7 27 27 H 1.08002 * 120.09241 * 359.97438 * 16 15 2 28 28 H 1.07998 * 119.90863 * 179.74001 * 17 16 15 29 29 H 1.09001 * 109.46846 * 270.22974 * 19 18 17 30 30 H 1.08989 * 109.47294 * 30.22908 * 19 18 17 31 31 H 1.09005 * 109.46636 * 150.23324 * 19 18 17 32 32 H 1.08001 * 119.90263 * 179.76411 * 20 18 17 33 33 H 1.08002 * 120.08845 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1298 0.0000 4 7 1.4587 2.3431 0.0005 5 6 2.1326 3.5102 0.0011 6 8 3.3518 3.5102 0.0006 7 6 1.4274 4.7318 0.0011 8 1 0.3475 4.7318 0.0011 9 6 2.1286 5.9462 0.0011 10 7 3.4345 5.9461 0.0006 11 14 1.1946 7.5640 0.0018 12 1 0.9476 7.9924 1.4020 13 1 1.9969 8.5990 -0.6984 14 1 -0.1032 7.3866 -0.6978 15 6 2.2422 -1.2735 -0.0006 16 6 3.6424 -1.2779 0.0000 17 6 4.3238 -2.4759 -0.0063 18 6 3.6275 -3.6729 -0.0028 19 6 4.3810 -4.9780 -0.0043 20 6 2.2427 -3.6773 -0.0028 21 6 1.5460 -2.4882 -0.0019 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3633 0.8901 -0.5137 24 1 -0.3633 -0.8899 -0.5139 25 1 0.4888 2.3431 0.0005 26 1 3.9195 6.7862 0.0002 27 1 4.1868 -0.3452 0.0004 28 1 5.4037 -2.4811 -0.0101 29 1 4.5627 -5.2915 -1.0323 30 1 5.3334 -4.8483 0.5096 31 1 3.7919 -5.7382 0.5087 32 1 1.7073 -4.6153 -0.0039 33 1 0.4660 -2.4934 -0.0023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083968517.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:30 Heat of formation + Delta-G solvation = -7.420367 kcal Electronic energy + Delta-G solvation = -16544.996893 eV Core-core repulsion = 13763.162158 eV Total energy + Delta-G solvation = -2781.834734 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40861 -39.57736 -37.55198 -34.87537 -34.22241 -32.13772 -31.99785 -29.77200 -28.39813 -27.45688 -23.53337 -23.24650 -22.04201 -20.40854 -19.55860 -17.80339 -17.43438 -16.78584 -15.99566 -15.85212 -15.52646 -15.47046 -14.76355 -14.65574 -14.46644 -14.30156 -14.21784 -13.34502 -13.00502 -12.94173 -12.88874 -12.84255 -12.71994 -12.23010 -12.14390 -12.04058 -11.85536 -11.01562 -10.87979 -10.05093 -10.01614 -9.84665 -8.81770 -8.44430 -7.11506 -0.04687 0.54037 1.36309 1.37573 1.54020 1.57031 2.06946 2.35618 2.40602 2.96408 3.60919 3.61648 3.93769 4.07303 4.15943 4.21220 4.38802 4.52161 4.63537 4.65031 4.87280 4.89545 4.93487 5.06658 5.14075 5.17410 5.27241 5.34138 5.56708 5.70097 5.72135 5.79107 6.01397 6.12002 6.65468 6.94918 7.44068 8.39864 8.56722 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.051989 B = 0.004196 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.445643 B = 6671.867425 C = 7189.867060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.080 3.920 3 N -0.271 5.271 4 N -0.594 5.594 5 C 0.542 3.458 6 O -0.618 6.618 7 C -0.563 4.563 8 H 0.095 0.905 9 C 0.028 3.972 10 N -0.803 5.803 11 Si 1.013 2.987 12 H -0.257 1.257 13 H -0.269 1.269 14 H -0.244 1.244 15 C -0.059 4.059 16 C -0.112 4.112 17 C -0.134 4.134 18 C -0.082 4.082 19 C -0.112 4.112 20 C -0.121 4.121 21 C -0.090 4.090 22 H 0.092 0.908 23 H 0.061 0.939 24 H 0.113 0.887 25 H 0.383 0.617 26 H 0.282 0.718 27 H 0.094 0.906 28 H 0.131 0.869 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.162 0.838 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.493 -18.285 -0.007 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 N -0.079 5.079 4 N -0.340 5.340 5 C 0.352 3.648 6 O -0.503 6.503 7 C -0.599 4.599 8 H 0.114 0.886 9 C -0.190 4.190 10 N -0.431 5.431 11 Si 0.830 3.170 12 H -0.182 1.182 13 H -0.194 1.194 14 H -0.167 1.167 15 C -0.061 4.061 16 C -0.132 4.132 17 C -0.152 4.152 18 C -0.083 4.083 19 C -0.168 4.168 20 C -0.139 4.139 21 C -0.110 4.110 22 H 0.111 0.889 23 H 0.080 0.920 24 H 0.131 0.869 25 H 0.223 0.777 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.149 0.851 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.179 0.821 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.627 -17.563 -0.011 18.443 hybrid contribution -0.957 0.977 0.001 1.368 sum -6.584 -16.586 -0.010 17.845 Atomic orbital electron populations 1.21263 0.89661 1.04719 1.04387 1.23760 0.95634 0.90988 1.00482 1.74981 1.28193 0.93056 1.11700 1.47288 1.07864 1.01723 1.77105 1.17345 0.87393 0.82309 0.77771 1.90631 1.15972 1.86849 1.56867 1.20390 0.95711 0.89929 1.53883 0.88647 1.27204 0.95575 1.05460 0.90756 1.70184 1.10063 1.29813 1.32994 0.84814 0.78699 0.73721 0.79774 1.18172 1.19373 1.16711 1.18545 0.92611 0.90943 1.04026 1.21430 0.94423 0.98358 0.98995 1.21152 1.00512 0.91627 1.01920 1.20486 0.94727 0.95662 0.97458 1.20863 1.00013 0.92634 1.03299 1.21334 0.93389 0.98716 1.00424 1.21580 1.01270 0.90053 0.98065 0.88921 0.92031 0.86873 0.77737 0.90815 0.88812 0.85106 0.90058 0.91225 0.89570 0.82089 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.04 71.24 0.64 -3.03 16 2 C 0.08 2.98 7.11 45.08 0.32 3.30 16 3 N -0.27 -13.46 10.19 -42.82 -0.44 -13.90 16 4 N -0.59 -30.82 6.11 -180.31 -1.10 -31.92 16 5 C 0.54 34.18 7.67 84.93 0.65 34.83 16 6 O -0.62 -45.22 15.21 -5.04 -0.08 -45.29 16 7 C -0.56 -32.65 9.28 23.44 0.22 -32.43 16 8 H 0.10 4.82 7.85 -2.91 -0.02 4.80 16 9 C 0.03 1.59 5.50 85.36 0.47 2.06 16 10 N -0.80 -49.80 11.71 21.87 0.26 -49.54 16 11 Si 1.01 40.19 29.56 68.60 2.03 42.22 16 12 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 13 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 14 H -0.24 -8.88 7.11 99.48 0.71 -8.17 16 15 C -0.06 -1.92 5.88 -20.11 -0.12 -2.03 16 16 C -0.11 -3.95 9.59 22.60 0.22 -3.73 16 17 C -0.13 -3.67 9.68 22.23 0.22 -3.46 16 18 C -0.08 -1.71 5.89 -19.75 -0.12 -1.83 16 19 C -0.11 -1.48 10.00 71.24 0.71 -0.77 16 20 C -0.12 -2.25 9.68 22.23 0.22 -2.04 16 21 C -0.09 -2.00 9.37 22.60 0.21 -1.79 16 22 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.06 1.69 6.36 -2.39 -0.02 1.67 16 24 H 0.11 2.05 6.46 -2.39 -0.02 2.04 16 25 H 0.38 16.58 6.41 -213.33 -1.37 15.21 16 26 H 0.28 15.56 8.29 -92.70 -0.77 14.79 16 27 H 0.09 4.05 7.55 -2.91 -0.02 4.03 16 28 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 31 H 0.09 0.81 8.08 -2.38 -0.02 0.79 16 32 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.16 2.44 6.36 -2.91 -0.02 2.42 16 Total: -1.00 -85.59 290.62 4.08 -81.52 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.23 Total: 27.83 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 3.64 Total: -10.92 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -1.28 Total: -95.36 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.08 Total: -45.29 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -85.59 4.08 -81.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083968517.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.096 kcal (2) G-P(sol) polarization free energy of solvation -85.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds