Wall clock time and date at job start Mon Mar 30 2020 04:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47393 * 2 1 4 4 C 1.35944 * 117.00125 * 180.02562 * 3 2 1 5 5 C 1.38799 * 119.96713 * 359.71724 * 4 3 2 6 6 C 1.37993 * 120.03558 * 179.77031 * 5 4 3 7 7 C 1.39087 * 119.96415 * 0.50682 * 6 5 4 8 8 N 1.39403 * 120.03138 * 179.72260 * 7 6 5 9 9 C 1.36829 * 120.00432 * 0.02687 * 8 7 6 10 10 H 1.07998 * 119.99690 * 24.42740 * 9 8 7 11 11 C 1.38759 * 120.00301 * 204.42961 * 9 8 7 12 12 N 1.31620 * 119.99647 * 15.78958 * 11 9 8 13 13 Si 1.86799 * 120.00043 * 195.79376 * 11 9 8 14 14 H 1.48503 * 109.47131 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47017 * 119.99884 * 13 11 9 16 16 H 1.48499 * 109.46899 * 239.99787 * 13 11 9 17 17 C 1.46504 * 119.99617 * 180.02562 * 8 7 6 18 18 C 1.47202 * 109.47044 * 83.71504 * 17 8 7 19 19 N 8.25908 * 142.96944 * 29.46301 * 2 1 3 20 20 C 1.39078 * 119.93118 * 359.75047 * 7 6 5 21 21 C 1.38000 * 119.96827 * 359.97438 * 20 7 6 22 22 H 1.09005 * 109.46910 * 59.99905 * 1 2 3 23 23 H 1.08996 * 109.47083 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47194 * 300.00397 * 1 2 3 25 25 H 1.09000 * 109.47194 * 239.99603 * 2 1 3 26 26 H 1.09001 * 109.47108 * 119.99620 * 2 1 3 27 27 H 1.08007 * 119.97861 * 0.02803 * 5 4 3 28 28 H 1.07999 * 120.01745 * 180.23495 * 6 5 4 29 29 H 0.96999 * 119.99680 * 180.02562 * 12 11 9 30 30 H 1.09003 * 109.47216 * 203.71131 * 17 8 7 31 31 H 1.08999 * 109.46996 * 323.71502 * 17 8 7 32 32 H 1.08005 * 120.01846 * 179.97438 * 20 7 6 33 33 H 1.07998 * 119.98477 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3541 1.5254 -0.0005 5 6 4.1989 0.4241 0.0049 6 6 5.5672 0.6033 -0.0005 7 6 6.0996 1.8882 -0.0006 8 7 7.4816 2.0707 -0.0001 9 6 8.3151 0.9856 -0.0001 10 1 7.9688 0.0387 -0.3872 11 6 9.6053 1.1017 0.4973 12 7 9.9326 2.1361 1.2425 13 14 10.8775 -0.2098 0.1091 14 1 10.2618 -1.2605 -0.7407 15 1 12.0190 0.4064 -0.6138 16 1 11.3629 -0.8182 1.3738 17 6 8.0416 3.4245 0.0003 18 6 8.0883 3.9358 1.3799 19 7 8.1233 4.3307 2.4465 20 6 5.2517 2.9906 -0.0006 21 6 3.8838 2.8083 -0.0010 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7851 -0.5735 0.0091 28 1 6.2243 -0.2538 -0.0001 29 1 10.8346 2.2174 1.5899 30 1 9.0501 3.4007 -0.4127 31 1 7.4152 4.0770 -0.6080 32 1 5.6637 3.9891 -0.0003 33 1 3.2252 3.6642 -0.0006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615946793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:28 Heat of formation + Delta-G solvation = 29.784475 kcal Electronic energy + Delta-G solvation = -17133.048398 eV Core-core repulsion = 14352.826987 eV Total energy + Delta-G solvation = -2780.221411 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.39526 -37.89169 -35.65522 -34.40570 -32.07800 -31.31363 -30.23486 -28.22494 -27.04560 -24.03723 -23.35732 -21.40008 -20.33219 -17.75426 -17.64760 -16.82803 -16.05761 -15.65620 -15.00463 -14.45920 -14.13817 -13.76337 -13.03964 -13.00510 -12.74862 -12.56804 -12.41196 -12.28775 -11.93224 -11.49376 -11.39558 -11.33702 -11.15786 -11.10774 -10.70670 -10.52603 -10.40928 -10.27574 -9.73651 -9.37274 -8.48199 -8.19598 -6.62527 -6.39210 -3.89893 2.20155 2.46912 3.10639 3.16746 3.20241 3.73921 3.83490 4.05304 4.17678 4.59244 4.92233 5.00886 5.08045 5.18368 5.36922 5.39848 5.58063 5.67740 5.70459 5.89480 6.02033 6.10086 6.22003 6.26111 6.44794 6.58305 6.81885 6.92934 7.20421 7.31740 7.35044 7.51074 7.84088 8.21574 8.50463 8.91026 9.13753 9.45669 10.55183 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028087 B = 0.006070 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.650665 B = 4611.715945 C = 5382.716806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.328 6.328 4 C 0.014 3.986 5 C -0.148 4.148 6 C -0.169 4.169 7 C 0.192 3.808 8 N -0.455 5.455 9 C -0.308 4.308 10 H 0.100 0.900 11 C 0.026 3.974 12 N -0.878 5.878 13 Si 0.927 3.073 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.283 1.283 17 C 0.237 3.763 18 C 0.248 3.752 19 N -0.481 5.481 20 C -0.198 4.198 21 C -0.091 4.091 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.272 0.728 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.243 -2.750 -5.854 11.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.244 6.244 4 C -0.032 4.032 5 C -0.167 4.167 6 C -0.193 4.193 7 C 0.081 3.919 8 N -0.148 5.148 9 C -0.436 4.436 10 H 0.118 0.882 11 C -0.177 4.177 12 N -0.515 5.515 13 Si 0.754 3.246 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.209 1.209 17 C 0.110 3.890 18 C -0.070 4.070 19 N -0.161 5.161 20 C -0.223 4.223 21 C -0.110 4.110 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.129 0.871 28 H 0.141 0.859 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.850 -1.936 -4.182 9.978 hybrid contribution 0.966 -1.131 -0.320 1.521 sum -7.884 -3.067 -4.502 9.583 Atomic orbital electron populations 1.21747 0.93795 1.02111 1.03048 1.22513 0.94845 0.83585 1.00693 1.85931 1.20170 1.27360 1.90945 1.18454 0.81219 0.94053 1.09488 1.20822 0.93847 0.96745 1.05308 1.20365 0.93664 0.96050 1.09223 1.17978 0.84261 0.93267 0.96416 1.42288 1.00486 1.03630 1.68361 1.19557 0.93380 0.91613 1.39015 0.88246 1.25317 0.99140 0.98285 0.94996 1.69845 1.20706 1.30259 1.30735 0.85839 0.80245 0.80258 0.78243 1.19286 1.20527 1.20918 1.18525 1.01560 0.83842 0.85117 1.29530 0.90637 0.91158 0.95655 1.80933 1.11434 1.11920 1.11833 1.20274 0.92132 0.97263 1.12584 1.19873 0.94127 0.93965 1.03072 0.91893 0.91068 0.91893 0.92888 0.92918 0.87131 0.85921 0.91732 0.86351 0.90157 0.86665 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.15 0.38 -1.11 16 2 C 0.06 0.77 5.46 37.15 0.20 0.98 16 3 O -0.33 -5.57 10.14 -19.56 -0.20 -5.77 16 4 C 0.01 0.26 6.69 -39.17 -0.26 -0.01 16 5 C -0.15 -2.72 9.03 -39.46 -0.36 -3.08 16 6 C -0.17 -3.47 9.26 -39.36 -0.36 -3.83 16 7 C 0.19 4.12 6.47 -83.79 -0.54 3.58 16 8 N -0.46 -10.26 2.70 -116.23 -0.31 -10.57 16 9 C -0.31 -7.31 8.97 -15.13 -0.14 -7.45 16 10 H 0.10 2.30 6.23 -52.49 -0.33 1.97 16 11 C 0.03 0.63 4.95 -17.45 -0.09 0.54 16 12 N -0.88 -22.21 9.40 55.49 0.52 -21.69 16 13 Si 0.93 18.95 29.58 -169.99 -5.03 13.93 16 14 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 15 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 17 C 0.24 4.86 4.80 -6.83 -0.03 4.83 16 18 C 0.25 5.75 13.08 -20.70 -0.27 5.48 16 19 N -0.48 -12.05 18.55 42.23 0.78 -11.27 16 20 C -0.20 -3.88 9.09 -39.36 -0.36 -4.24 16 21 C -0.09 -1.69 9.98 -39.46 -0.39 -2.09 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.65 7.67 -51.93 -0.40 0.25 16 26 H 0.05 0.67 7.65 -51.93 -0.40 0.27 16 27 H 0.11 1.75 6.29 -52.48 -0.33 1.42 16 28 H 0.12 2.50 6.19 -52.49 -0.33 2.17 16 29 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 30 H 0.12 2.45 6.75 -51.93 -0.35 2.10 16 31 H 0.08 1.34 6.55 -51.93 -0.34 1.00 16 32 H 0.12 2.08 6.15 -52.48 -0.32 1.76 16 33 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 284.01 15.07 4.28 4.28 Total: -1.00 -28.21 284.01 -5.79 -34.00 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.62 Total: 3.49 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.22 Total: -6.40 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.99 Total: -43.53 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.20 Total: -5.77 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.21 -5.79 -34.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615946793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.783 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds